ae5f972573ecbf80c1a533634a51bfea *DESCRIPTION
ab9af1127402ad14f39c3c933ca0639c *NAMESPACE
564765b591781ee2daafe7aab1026e7c *NEWS
56cf97a522ba90d32892f96ff9a11f21 *R/Coalescent.R
f2714e8467bff1519089cfa5367777c8 *R/Densi.R
f98d9861767743b1512b4c40c1d6329f *R/SOWH.R
443678ec1b2a08271125b63302bacb82 *R/cladePar.R
a0b6ec1c7eac8d4550bf3e285f3b5fb2 *R/clanistic.R
0c34942e7707251ce5d1be87768af359 *R/dist.p.R
3682f5582ed918deb90fb83bd868ad17 *R/distSeq.R
439c214b9f1110f906058bd5d7690ab8 *R/fitch.R
0b14dae3ff6bec7c05ddd3c743b6160d *R/networx.R
3856d9b479d4fe307f5a3009b7e50974 *R/parsimony.R
2522e831ab485ad053c46682c676926e *R/phyDat.R
965cace6a1074d0c65c806c64eb27f13 *R/phylo.R
93f94b18345a55755fe051235bd744be *R/sankoff.R
ccf0d906a9c1737944d3dad74db5ad03 *R/simSeq.R
2b4d6884b4ee2b92e617cea76f79d3da *R/sysdata.rda
471e011d37ec74a19f97ff3fd2bdcf3c *R/treeManipulation.R
2986e8e52b0aac1804a5e6949581ee90 *R/treedist.R
61f56b82466ead4a6260b8f8c7e5da5a *R/zzz.R
0099689a5ec886a1b60364a374079c0a *README.md
a16f8ea678516c3fff67b128507cdbad *build/vignette.rds
4a92b07bcd170e85bd237e460acafa93 *data/Laurasiatherian.RData
4b269c2e640293341b9b1c04d4dd7f4e *data/chloroplast.RData
19f84425e8caaf9f605490cdff17dd81 *data/yeast.RData
84bf238d2accacd000efc63a7cb8a854 *inst/CITATION
ccdd1800b2849123e90c715de0aac38a *inst/README
8b6432c6b957365210f3ee7e88114b48 *inst/doc/Ancestral.R
62eaa7bcc25971bc619a1d9e81609654 *inst/doc/Ancestral.Rnw
bfd8e0dfe0c57e211e4600e8221b530d *inst/doc/Ancestral.pdf
ab045303c09692490584c60af7c2df81 *inst/doc/Trees.R
73d04495f67f93560376a1199ee397e1 *inst/doc/Trees.Rnw
46d2167ad02c1ee4670cd07e6420876c *inst/doc/Trees.pdf
eba9087ddf05395f7204d0a9aa2ee9b0 *inst/doc/phangorn-specials.R
9e113e6996fb9122df7abb5abc651298 *inst/doc/phangorn-specials.Rnw
1c3fda481fca1865b5a0b6dae6667885 *inst/doc/phangorn-specials.pdf
1d6450648f6c63790e55c5c34b47727e *inst/extdata/Blosum62.dat
bc5f05e4b7f370c0d056596cf50e8f5e *inst/extdata/Dayhoff.dat
5aa357dab0e72b27023e4302bc37dbad *inst/extdata/FLU.dat
7f26e2fb5d2714cf3655b620b8b1249c *inst/extdata/HIVb.dat
4894a973edc4f0a24845e9e1ec19d667 *inst/extdata/HIVw.dat
2b0ed3bb0904ba441a375125075ea529 *inst/extdata/JTT.dat
4ac3e10a01eb6e5daae61b011d5c9751 *inst/extdata/MtZoa.dat
307278c422ab8eed0b87d77c9945913a *inst/extdata/RtREV.dat
cc6edeeddb5611ac106064a860375a96 *inst/extdata/VT.dat
fc090d051ce4f18b937448a254e2764e *inst/extdata/cpREV.dat
50c707c26bf9015b37670f15d5e1c14b *inst/extdata/dayhoff-dcmut.dat
6da24109959f0c7a7db50c8db78d5d42 *inst/extdata/jtt-dcmut.dat
ddc4bd45521cd72848aaf2f79b90ac6e *inst/extdata/lg.dat
917303a3df098f9137c651de0afa78fa *inst/extdata/mtArt.dat
70d7e9520b6b35ff8291e62e401ad010 *inst/extdata/mtREV24.dat
e448abea79b7fad9423f05d777f25d80 *inst/extdata/mtmam.dat
87fa1533c4dfe7074237cfa2196bcbeb *inst/extdata/wag.dat
ac9d58a6b4c748a9b9111aadc166a273 *man/Ancestors.Rd
bda5669b71de975e1309d909c495b71f *man/Laurasiatherian.Rd
e57a0cb758898ccb42ed112d17f6abc4 *man/NJ.Rd
81f2ca01c6046acbf56b81fcced26907 *man/SH.test.Rd
55bdb0574f87194f20fece5846d1249d *man/SOWH.test.Rd
6403c950d8f9700d3fe1c847970461ef *man/allTrees.Rd
cd1eacaabe50ba1297d1218aa033ead2 *man/ancestral.pml.Rd
6c8286c8c1753d152ff7069fe8a5049f *man/as.splits.Rd
1733dd50b276c57017998ab0667bc442 *man/bab.Rd
ce2d2391d96a1ba380c4180e5404d340 *man/bootstrap.pml.Rd
22ad0ef60c2edd8b3d003f170f2fa15a *man/chloroplast.Rd
780598f20a7b254cec30e6a26faaf753 *man/cladePar.Rd
6066a2a843eac6adada829958127f5fd *man/consensusNet.Rd
87e794455893def42f84ce8383093d27 *man/densiTree.Rd
20f30cceced0e7188e76e70b4c947a32 *man/designTree.Rd
924c4e906042d64ac4fc4907af8c6cf1 *man/dfactorial.Rd
c62ae235d220eb43b1166b9f92f87b66 *man/dist.hamming.Rd
54c19fb0dae0aae106ea1924f6d00ed5 *man/dist.p.Rd
dbc23facc26a85fbc08711c754894cbb *man/distanceHadamard.Rd
52977f6e871e037a85a2da8a5e1b93e1 *man/getClans.Rd
31c267e2ee695f2fd48884d6eacbe428 *man/hadamard.Rd
7fea5adff65583a4da395db56eabb523 *man/lento.Rd
77e0c0a9f38a6457caee9c005a51072e *man/midpoint.Rd
80d87b5af246b4ae6fc62ec491c815d6 *man/modelTest.Rd
d6152d524a9a18e73529d8d90b02c947 *man/nni.Rd
5c6f72471d2f8e06ac770039560d0e9d *man/parsimony.Rd
06d3770fff0d07f19393875735cfa004 *man/phangorn-package.Rd
20ab2e9ecabe1d3cae7c499b02e92824 *man/phyDat.Rd
ff71a6693261b4c19006e616d9650127 *man/plot.networx.Rd
1928a27130ad8dfd1c8ff35027455248 *man/pml.Rd
0f2763f7d363e95281e8469a494f7ec2 *man/pml.fit.Rd
dd29a6e2c9a0063a610ceec29cb81b25 *man/pmlCluster.Rd
1f9c344c0a09003b0519f48eb2d25b3b *man/pmlMix.Rd
2b0c054375d0a84803d3d3d245886d04 *man/pmlPart.Rd
18fb589c1c09c9a494098a6d04d3dbad *man/read.aa.Rd
eae0eaba97a3f47e00f030c6fcb89ecf *man/simSeq.Rd
664f235a59f08e42bb98c5a8535dac4d *man/splitsNetwork.Rd
37ee6a424cdf0c055976e900cd6c3421 *man/superTree.Rd
90e4ca1fff4a96d2f4bffd36822fab36 *man/treedist.Rd
64399c9fb7fb25d103c25aa925ab7a10 *man/upgma.Rd
b97649fe8b91a0632a1ded89a6f43125 *man/yeast.Rd
9a8672b7759d360a54c251d1866b3e05 *src/Makevars
51bb09f306e97e448a7ba58ce5a6ff80 *src/dist.c
342f8f99cc7a661111847c85bd5997f6 *src/fitch.c
a609f70b8ee328b36979954b728c59ec *src/init.c
c50c9f842e54b1edaf87abf09776d32d *src/ml.c
e9205b5914825bb6df121428b01905e7 *src/phangorn.c
8d7a7fd4518b9b768736c92b1bc559ea *src/sankoff.c
62eaa7bcc25971bc619a1d9e81609654 *vignettes/Ancestral.Rnw
9608eda76927e9438fa12a63ef8692cd *vignettes/Trees.RData
73d04495f67f93560376a1199ee397e1 *vignettes/Trees.Rnw
6af5f4d4c2e93469cc19d46a97ab5d0f *vignettes/exdna.txt
9e113e6996fb9122df7abb5abc651298 *vignettes/phangorn-specials.Rnw
393169a393c0173a05facd689f6c0699 *vignettes/phangorn.bib
52069c3f2167c3003e6b09caa94ce7bf *vignettes/primates.dna
