aeda715679bddf9552549f5d6b4b0c7f *DESCRIPTION
ce9798eda2783746a191f0eeaec9706f *NAMESPACE
24334c918df07689e85ee0b6c1bc91d3 *R/check_pharmpy.R
fa1e63be1de3d52236663e91264503f7 *R/functions_wrapper.R
b05948b3e7b7a2625fe362ad8e3be481 *R/install.R
6cb09c16d0e5ea66a3a5a42b3aa6e40d *R/internals.R
c13f82db2a6bb31c383ee1d9ef4c9eca *R/printing.R
129a9c44f6425289377f1bfd506c075c *R/utils.R
f33758c19a552569a1f2d086f7ff5771 *R/zzz.R
8c77cb1e8873084ffa9f05168fd7f6a8 *README.md
957791de4719e4ca2ec8a4eef54b8f4b *inst/doc/index.html
23bc7d392f5ae839978478d35a163315 *man/add_admid.Rd
e1a1fef1a74ab838103d59aff4cdd48b *man/add_allometry.Rd
49b89bd0098094c2fed41706cfb6188c *man/add_bioavailability.Rd
0ebf0a166dd27f7624eed6567a215258 *man/add_cmt.Rd
a35e9040d237b47fa30cffc4b66d3c21 *man/add_covariate_effect.Rd
cb69381cd2e1459b021f72a04a909b4d *man/add_derivative.Rd
c85eb3a15bce7d8c5a4fc9581626e366 *man/add_effect_compartment.Rd
d8f0a8154677ed8cfabfec53af7a90cf *man/add_estimation_step.Rd
08757ac297798663aeabebd8c26bfc62 *man/add_iiv.Rd
b6e831a4714753089a8b1171e3808fd2 *man/add_indirect_effect.Rd
5488bd2593ecad8a3283f287097056a4 *man/add_individual_parameter.Rd
e82173d8e3f61b9c438b7ed4f72c7509 *man/add_iov.Rd
a8b6393acc3fc52c3b26b3b663f493fe *man/add_lag_time.Rd
12795f1fe819d5908cc776a2d029107d *man/add_metabolite.Rd
42e3e9644e36aad786a3e821cfa86161 *man/add_parameter_uncertainty_step.Rd
1619b04cfa2a4b6d20389effc0c18b60 *man/add_pd_iiv.Rd
331b069b731b709b8b7f82069c1c945c *man/add_peripheral_compartment.Rd
e978de096ab00171cddf98e7b5b2b0aa *man/add_pk_iiv.Rd
6f30b6c6c1779ad588c46fc589581855 *man/add_population_parameter.Rd
91ec7c170a037253092bf0074baf3eca *man/add_predictions.Rd
f704737b1e72ce3dfe281ef1877cd1a0 *man/add_residuals.Rd
b1d1e27c0e590702d3ccee9e90533a5f *man/add_time_after_dose.Rd
ab7aa8e3a90062b4c1db014cd76361eb *man/append_estimation_step_options.Rd
4dd8a815432f04acc9e6d451664cbc69 *man/bin_observations.Rd
2dbdd1f9f177659e14e95259790537dc *man/bump_model_number.Rd
263a3969b511b87f6d1c5091b521dd42 *man/calculate_aic.Rd
6a584d41f43cf6c02a1cd40f5e522cc1 *man/calculate_bic.Rd
1995dffe8d9f9652256428722efb44bc *man/calculate_corr_from_cov.Rd
a4f0a3ff5e4eb49cac44dd3667d78323 *man/calculate_corr_from_prec.Rd
7ebb4ed47d8fb282f362fc258c685ac6 *man/calculate_cov_from_corrse.Rd
460c6ea114e0b1f9d4d9258e06d884a7 *man/calculate_cov_from_prec.Rd
0c3485e77575bcf12842647bcf52b67a *man/calculate_epsilon_gradient_expression.Rd
f187a0d87d37d9ee1d39e7163a4bc56b *man/calculate_eta_gradient_expression.Rd
bbd77b4773227445e7b3b88b4620ff63 *man/calculate_eta_shrinkage.Rd
678e07761d2a00ab50c4bb5207f45d76 *man/calculate_individual_parameter_statistics.Rd
9ca1cb380f70e9f651e59d978193e6fe *man/calculate_individual_shrinkage.Rd
4f0c64bfb728a4479ad71ded685198af *man/calculate_parameters_from_ucp.Rd
6fb2c2b8da0e959f89a15f436a758877 *man/calculate_pk_parameters_statistics.Rd
cdcf108d5bf5e84230b320b46762f854 *man/calculate_prec_from_corrse.Rd
0e26f3cdf11ef7beede214455475ee83 *man/calculate_prec_from_cov.Rd
07f3f8f14cea539036b0a3e8867f530d *man/calculate_se_from_cov.Rd
bbad4aabd7fdfb5becaad1b722173b1a *man/calculate_se_from_prec.Rd
a424d8cd19cbf11fc1448dd95a9c71b5 *man/calculate_ucp_scale.Rd
38c139ab7dde73094df66872eb4958da *man/check_dataset.Rd
3e4621ab4944ddbd6380952f2de90d48 *man/check_high_correlations.Rd
ad7a4ea547f59d6d1024b1b96236b8ef *man/check_parameters_near_bounds.Rd
0c7b4b4372d6a49d6ab32c83f36eca5a *man/check_pharmpy.Rd
4bea463c5056c241fb83650708c6c9d5 *man/cleanup_model.Rd
5886b0f9f7460394ede05e2b3e9c71e0 *man/convert_model.Rd
f82f804737ed4ba8c2a41544e92c074b *man/create_basic_pk_model.Rd
4c48e881840806ceb792e40d64a19dd5 *man/create_config_template.Rd
0a4bbcfe5fe950da3031f7867b9a62f2 *man/create_joint_distribution.Rd
c51000e5e191f496db22d9e737eac833 *man/create_report.Rd
db05baa015045fdd194300c637d79dd9 *man/create_rng.Rd
fca7a4f368be8d34826e0fb427e8a144 *man/create_symbol.Rd
3c632188853b57a50862a2d0fbfe39c8 *man/deidentify_data.Rd
5974107fbcfc2104c00b5bebce2f3895 *man/display_odes.Rd
a72232073474f9271d301dd2d180fa2f *man/drop_columns.Rd
23eaf0a93f7309e02ce2e3c36f726c8f *man/drop_dropped_columns.Rd
070d5ede8a19936b17798f4c7fa72d61 *man/evaluate_epsilon_gradient.Rd
0cb5e87553ab3dfa2b6bd3244aca9fd5 *man/evaluate_eta_gradient.Rd
6e91ad6ced5eb92dcf3e1dfc3bb65475 *man/evaluate_expression.Rd
45cc7a4dc416fc96b46bb535f7c42a7c *man/evaluate_individual_prediction.Rd
6418ec403cc6f1312365e32d94573659 *man/evaluate_population_prediction.Rd
de44ac1c5fb15a14b8118b6ff10eeb09 *man/evaluate_weighted_residuals.Rd
c8b3de1c06d4ad00ce99234c93f88c77 *man/expand_additional_doses.Rd
070f6d48e20a801b81f6f55d545f7b39 *man/filter_dataset.Rd
29f19dac39741e836fd543cf84b2823f *man/find_clearance_parameters.Rd
f019ce39422dbb7da26544c298e63cda *man/find_volume_parameters.Rd
9b5814ff01585c85111c1a06ee29352c *man/fit.Rd
c2774f897babb6efb1b405b7bda3d9ed *man/fix_or_unfix_parameters.Rd
b7171e6170881136c8111d04d238b692 *man/fix_parameters.Rd
e5f3526be4238fdf002aba966cd7a0b3 *man/fix_parameters_to.Rd
b75e8ba545de0dd848fac574e44c282e *man/get_admid.Rd
60e278817df30b9892c59f65f00f6385 *man/get_baselines.Rd
08d80753b8f8ef7a20747e15709fd52b *man/get_bioavailability.Rd
38756cccf07bb669fcabeac855f994b5 *man/get_central_volume_and_clearance.Rd
f94a0d8d676e64da697e20ca75212c7e *man/get_cmt.Rd
4ab4f7415863ef2623648c944d6143c5 *man/get_concentration_parameters_from_data.Rd
69e09b389f8faa6b66fcca208a69413a *man/get_config_path.Rd
f9b2c4a36f19e9e8a16fa00a05856c63 *man/get_covariate_baselines.Rd
70923a0b762c3f5e9664a48027d1fa86 *man/get_covariate_effects.Rd
492bbfe7b1925ff1ff037fc8ccb6db8a *man/get_doseid.Rd
3c8afba2862b2e323cc2938552e635cd *man/get_doses.Rd
8c367f4549ca65b769bae8862223cd8b *man/get_dv_symbol.Rd
8f14850b260e1d14e481a8ff90fff091 *man/get_evid.Rd
3ed25db6d26198fb8268049ddeda3156 *man/get_ids.Rd
33942a99bdfe534eaad5fea0ff1e752e *man/get_individual_parameters.Rd
5014df2e25bc303324345e08cd24458d *man/get_individual_prediction_expression.Rd
d765d3a93a1de000a57ed6a51343a026 *man/get_initial_conditions.Rd
76b3096151501ec9e4d8a154bba1c636 *man/get_lag_times.Rd
65ce79e09278f321f053c077826a0d80 *man/get_mdv.Rd
b0195f7ade85f2bb1718d5e8bad2fc6d *man/get_model_code.Rd
bf566089882b1a03126230f03fc636f3 *man/get_model_covariates.Rd
2708f50205c0638f7983bb51a6730aab *man/get_number_of_individuals.Rd
d00ed43ae7ab1a0a320b0dd829e6fd9f *man/get_number_of_observations.Rd
31a39a012db515827203f42225fdcf6a *man/get_number_of_observations_per_individual.Rd
4072601c0f5921fb0779a25c7200a99a *man/get_number_of_peripheral_compartments.Rd
7530a07c9c8e1acfe61a86a7953b2f33 *man/get_number_of_transit_compartments.Rd
7e8a3492a82a8923c576c83c08f3512f *man/get_observation_expression.Rd
4c0b5da6c334611703f91cd314958598 *man/get_observations.Rd
f768c286734f77b3f988cbdfe6b7e0c3 *man/get_omegas.Rd
a6af8cb8fab9fdd41f89627d8870111c *man/get_parameter_rv.Rd
43989fe76ae428d8931078387433d85e *man/get_pd_parameters.Rd
1a9f1b26f9b6eedb95212357d70d137c *man/get_pk_parameters.Rd
955eec11acb10d7c3983f703dc4ae057 *man/get_population_prediction_expression.Rd
a62ff3a1b8c87fae027ec61c17f6d0f0 *man/get_rv_parameters.Rd
86b6a8ba09dcd85e86325043989e8540 *man/get_sigmas.Rd
8a030f21cd6e184470d71b4e5cc8349c *man/get_thetas.Rd
2f31b3e9062d099fe086ce881840f1f1 *man/get_unit_of.Rd
e95c22d7a0f71002f7166e192dfa101f *man/get_zero_order_inputs.Rd
3ad317db420413e231c8a414f31c162f *man/greekify_model.Rd
3a461c8686ba5c6b9473a542f2afaf28 *man/has_additive_error_model.Rd
df196b8a3d6e689bee14cb9179159fbc *man/has_combined_error_model.Rd
3370d91848744eac615b2880e7898d59 *man/has_covariate_effect.Rd
cd995f08248352aec21bca30b05417f1 *man/has_first_order_absorption.Rd
4f9fb32cbe9bf7c920719ca7ae6bd424 *man/has_first_order_elimination.Rd
9bcad58fd1735b4f46d4d1c45d0369b0 *man/has_instantaneous_absorption.Rd
2afcfc962fb71bc5e8a94181e7dbeb3d *man/has_linear_odes.Rd
dbf458548d04300a52ff8aaeaa317405 *man/has_linear_odes_with_real_eigenvalues.Rd
ca77bb9858b8e310678000b3e1d25edf *man/has_michaelis_menten_elimination.Rd
0eb5c3b357a3951ec8c0c750370b60f6 *man/has_mixed_mm_fo_elimination.Rd
ed2fbc747667063c61ba4d7d0325bc12 *man/has_odes.Rd
8dd6d8fff87b1ea2e403f4c46cd820d8 *man/has_presystemic_metabolite.Rd
42d91dd80a652f40b551372f1641b5d6 *man/has_proportional_error_model.Rd
a3f1dc205a1e3fa76f742e140f9bf9c6 *man/has_random_effect.Rd
cb64747f85aec4db5f5490ec47c22c05 *man/has_seq_zo_fo_absorption.Rd
12ff1b5c75c5b025292c7dc3afc4e303 *man/has_weighted_error_model.Rd
d3720e081505da4980a62e0f8db0a4cb *man/has_zero_order_absorption.Rd
a5a334d4e5623fcc08360be228f56c1e *man/has_zero_order_elimination.Rd
b68066486a35dade65616173453d2c17 *man/install_pharmpy.Rd
0f8daf49dfe78b22b40cb5db8a1690d8 *man/install_pharmpy_devel.Rd
f3a6ef9f4634adb9a4c33efa46c2d39f *man/is_linearized.Rd
b40bea7ce70798bf09db8f47bb1f38bf *man/is_real.Rd
8e0eaddbc1644e8e5bae06835847a8fc *man/is_strictness_fulfilled.Rd
8c5d7c7afdda00e6a85d30a23aa701db *man/list_time_varying_covariates.Rd
6995111c32164f8a901c52a22c28be18 *man/load_dataset.Rd
3d63ce85a7b6ea5c5e92e20aa7331c28 *man/load_example_model.Rd
cb73b1524c6923644c08d91d771468c9 *man/load_example_modelfit_results.Rd
53723765ac4721d09c86d1d98a9b5074 *man/make_declarative.Rd
9d4fc94b23e260b9a2dc0f3cde685b1d *man/mu_reference_model.Rd
9f3defc67bfebfef8af56e01a4cbf985 *man/omit_data.Rd
74c0d2f5e480cdff7b2ae5efb27e7e3a *man/plot_abs_cwres_vs_ipred.Rd
6ca030d45834635d92474bbc081bfc33 *man/plot_cwres_vs_idv.Rd
9808c06bf064bc3dc4815cec41bad42b *man/plot_dv_vs_ipred.Rd
56d36eff29607a135a1e06f43922f013 *man/plot_dv_vs_pred.Rd
97c8340f6bf9bb06e80912341c75140e *man/plot_eta_distributions.Rd
ade9d8d627c3608c4552d08769b8cac3 *man/plot_individual_predictions.Rd
5372215e3fafb7587acf2809a020eda7 *man/plot_iofv_vs_iofv.Rd
e08852bc4f9fa02d145dd1cd73425c45 *man/plot_transformed_eta_distributions.Rd
cf8cc4ac710b8a3ff8a3b58546767585 *man/plot_vpc.Rd
17ab31fed1d9e28dab468b87f4e58c24 *man/predict_influential_individuals.Rd
4bd37c6b4c1b39defbef776821440e23 *man/predict_influential_outliers.Rd
d6bc1e44a0d51970fdc552594661398f *man/predict_outliers.Rd
a438b77699048c4eac25c9c81345f05b *man/print_fit_summary.Rd
3dc7290957123ec47cb1e241a74a2970 *man/print_model_code.Rd
58aab2c21bfb6c0b2d9fee8b2982a85f *man/print_model_symbols.Rd
2d6ef07044e534c89564569666d16f2a *man/print_pharmpy_version.Rd
7f9ad1f71e0e6acd4944d5cb09e40d62 *man/read_dataset_from_datainfo.Rd
f9806bc6ce35374682225ae52f571a4e *man/read_model.Rd
9a109a1e17918616d3b8ed77fa161115 *man/read_model_from_string.Rd
bf0d0a19bad9d2ef14eed328d050682f *man/read_modelfit_results.Rd
b8b002c54a2a1a93b86c406b95898f13 *man/read_results.Rd
c423d3d989127497803fcce30803231c *man/remove_bioavailability.Rd
97987b7aac147a6f58e918e70f10ec71 *man/remove_covariate_effect.Rd
b6cafca49b4f66e8fa58281b79a63f0a *man/remove_derivative.Rd
f788d05a3091294a4ccb9b8c5da398d9 *man/remove_error_model.Rd
4894be2c5a07db28c70bef4ed5b2cd86 *man/remove_estimation_step.Rd
521db05c7906949f1b0fd5db53bb709f *man/remove_iiv.Rd
bc3812805a953c35f1e29a0fcd5c13c7 *man/remove_iov.Rd
bb516c9f732f9e5636ffd226fd46617f *man/remove_lag_time.Rd
77a13c61dc8ebe226e9a5583202f0d73 *man/remove_loq_data.Rd
20627af23ff2519b1d7fdb058f4bd6e3 *man/remove_parameter_uncertainty_step.Rd
925d630cc1ddc08b163086ec92569fa4 *man/remove_peripheral_compartment.Rd
eca7aa9975a7f1f52ec11684f95ae199 *man/remove_predictions.Rd
506ac19262ccf1af3634d5de7bca280a *man/remove_residuals.Rd
d681f429b4047db88315a996fec4b369 *man/remove_unused_parameters_and_rvs.Rd
b692198c7f6e9a13fee3bc60c1c39ba9 *man/rename_symbols.Rd
bd668fe884437cc1e32cbabfb13fb81f *man/replace_non_random_rvs.Rd
d7987c884c81e11b08d1f472e08d4487 *man/resample_data.Rd
b880ea19878c98ce8e02d0dfd1e9c1c9 *man/reset_index.Rd
177a8a4b55c64a6e3b9627baf894fa0f *man/reset_indices_results.Rd
662521ba42668e579691c39609fe7aa5 *man/retrieve_models.Rd
2d702cc343ef8ebb490c7a5c141fb626 *man/run_allometry.Rd
171044e5221280f1326eceda211c99ac *man/run_amd.Rd
f2f51ed81e4ac6e2ea941d69668fa744 *man/run_bootstrap.Rd
4991f25087b1c092876aeb1de5d3a4e1 *man/run_covsearch.Rd
f1de1451c7fdc26824f816174982fc58 *man/run_estmethod.Rd
a380cac611e8579fc085359ce7d7f31f *man/run_iivsearch.Rd
6fbb61008715b4abe0e53ade941e4a94 *man/run_iovsearch.Rd
eff09197fd5147fc6b26c0621b676a37 *man/run_linearize.Rd
ef85ca2632c61fba2281049826c8dc52 *man/run_modelfit.Rd
26483f56f1761e5b1e693396a9ba447b *man/run_modelsearch.Rd
e6d3e6723824d5f0c7981a64ee067951 *man/run_retries.Rd
3bd75e9f56944ffc21f3a386b9bde7cb *man/run_ruvsearch.Rd
810021ab51bf51e600ba1304a46236ac *man/run_simulation.Rd
660e4d90b355cb185695faafdcc16bf8 *man/run_structsearch.Rd
5a362ed89e54581f790a055a1cfd321b *man/run_tool.Rd
504067c3446dfef8af4620f9b06a8a48 *man/sample_individual_estimates.Rd
9052e6a6ddf803b8c28a727f032d46e6 *man/sample_parameters_from_covariance_matrix.Rd
df0cf282cc68e7f57b3053bb17c3d66a *man/sample_parameters_uniformly.Rd
b9072aef03012563111c8b24569b6f5b *man/set_additive_error_model.Rd
8b153e7e47ae9953cccda1321b5b468c *man/set_baseline_effect.Rd
81c3dbadb20370a6dde9f298545b31f7 *man/set_combined_error_model.Rd
30b10af4fd5c7b5011e88c71866f2b31 *man/set_covariates.Rd
f19e554a9666f2629bce59ef86f0918f *man/set_dataset.Rd
8291f7ed4ac23765c73994c362b6f49c *man/set_direct_effect.Rd
e091431b38fb6bf7b5ced37791816ad9 *man/set_dtbs_error_model.Rd
90db3b7f5998ef997317ca2d89448f0c *man/set_dvid.Rd
765005a90532eea37a6fd6d93d1eb53f *man/set_estimation_step.Rd
5654b0e49f2b4964c50e94bf55080eeb *man/set_evaluation_step.Rd
47b72c2432bea14e611423b53aecdb50 *man/set_first_order_absorption.Rd
7dfcd6068847971a4dacf423933425d9 *man/set_first_order_elimination.Rd
9015b614f8d0c5fc734ff7eabfc32e24 *man/set_iiv_on_ruv.Rd
2de551f9f96bd6f5d0ae0cac67ac502b *man/set_initial_condition.Rd
533f0333dc06461610d2b84af1482816 *man/set_initial_estimates.Rd
fa48263d9193789c4e6f228dd73ee83e *man/set_instantaneous_absorption.Rd
5eda6ec26221beac08ebbb28fa6ebd13 *man/set_lloq_data.Rd
6515a52c709acc215fb2ee8d4aef47a0 *man/set_lower_bounds.Rd
f583fe013e27e666272eedfb492d3cff *man/set_michaelis_menten_elimination.Rd
596259161a2dd07d7b2be9dbfeb94f4d *man/set_mixed_mm_fo_elimination.Rd
186e0d51a7656cfa90147bbead713fcc *man/set_name.Rd
4cdc095ca267df3daddb55c330c7448f *man/set_ode_solver.Rd
b52ee14e44b58ff90667219237525ce6 *man/set_peripheral_compartments.Rd
ce5a934e7c09e9d146777c332acfb8df *man/set_power_on_ruv.Rd
225fc214a7f8494995423c59f0e7e673 *man/set_proportional_error_model.Rd
35770c743f83e363569637bd7994402b *man/set_reference_values.Rd
6fd9d04207dbeb3a7d0c080ed6009025 *man/set_seq_zo_fo_absorption.Rd
746dba365b141aca6ddb59a1278343af *man/set_simulation.Rd
97e85dc397bf68355046ff2f6bbd1757 *man/set_time_varying_error_model.Rd
8127b496a8ec03ccede6f406c0b37a0f *man/set_tmdd.Rd
851e6359cb9960a354cf8d5635fa8644 *man/set_transit_compartments.Rd
7e57311f2acf38885a00cc3cb1ee330c *man/set_upper_bounds.Rd
dd4de6ebb742e9eb276e0000effc1aea *man/set_weighted_error_model.Rd
816161905f4f6c5ab58fbbd4fb1a314b *man/set_zero_order_absorption.Rd
b16f46855804f006c18b5a2150c24219 *man/set_zero_order_elimination.Rd
f03cae745901dcda90e15297cc21f99b *man/set_zero_order_input.Rd
9c8356a10655e32e96039cd4732dd97e *man/simplify_expression.Rd
0a166189515527be412ceca3c0b96022 *man/solve_ode_system.Rd
2a7a1c140372a1a1f63af93ee62d9ed5 *man/split_joint_distribution.Rd
f54d8ddbec4cce97b4bb3950caebeb7a *man/summarize_modelfit_results.Rd
6923e20d80eeef816775f6a63bf36f66 *man/transform_blq.Rd
890cbb8063f769f0d7f6fcb01a73aff2 *man/transform_etas_boxcox.Rd
f7cf829dee333573fefa779166023783 *man/transform_etas_john_draper.Rd
8ebe6d5ecf801f9e7c14770570f65869 *man/transform_etas_tdist.Rd
68372bae2bca74e870e7d42f9ec72de9 *man/translate_nmtran_time.Rd
b0faeca1635120d17a4d2ea33cd936dd *man/unconstrain_parameters.Rd
e57ba504b7426ac7d1bd6b1ea989d783 *man/undrop_columns.Rd
e9446be5b2e6d062e408f54262c64fde *man/unfix_parameters.Rd
d03ccbdeeb0ff27ac464e78e017e7f7b *man/unfix_parameters_to.Rd
576836752e123f0197bf9a7dfdb95c15 *man/unload_dataset.Rd
978ee7eec571f506d0ecaaeed7d600ff *man/update_initial_individual_estimates.Rd
1230a9e0e8610f2e39060e401889da94 *man/use_thetas_for_error_stdev.Rd
2dda2b889d796945f337da5385f43fc5 *man/write_csv.Rd
7c8b63f1df9e5c9cce1896c0868a3d66 *man/write_model.Rd
5ed4aa0b30e7ab69e83b3532aa4d7afb *man/write_results.Rd
6d86d6227d87bee256ad94e4604be52c *tests/testthat.R
a9fb2e01b84d493d890f23188ca93e01 *tests/testthat/results.json
398ee015c034cb4415e7131d55f39256 *tests/testthat/test-installed.R
d431018d1bff04502b19cfb33f2cc81f *tests/testthat/test-reset_index.R
d953bf0e9d1a8ad18c0d7d49072d53a7 *tests/testthat/test-transform.R
