b3aca6cfec879478c126ba7009c55b83 *DESCRIPTION
c39284a7f0d76b71cd3b709deb427a11 *NAMESPACE
dd01daec145a431f7e548bfbf7f58cfa *R/RcppExports.R
e6077a0f50d01415085f297e4de0db25 *R/binaryPGLMM.R
4bcbd0fb25f3665f67e1cd5240065f26 *R/cor_phylo.R
8778375ea0fab21c8adf21d617db4074 *R/data.R
7c865fda8a4772923620fb5df6ae4444 *R/pcd.R
b60210bd5348a16ba51f7f8ea377383a *R/pglmm-plot.R
b7ddf78331ca10550f580b7369127581 *R/pglmm-utils.R
badd2ba2e37195c109a3296b6209c4a2 *R/pglmm.R
a2cb8a545c49ec22c42743d46c1670e2 *R/psv.R
3dabc32529e6988fb852562e0857ca60 *R/utils.R
a874c7d1f27b12473fb020ea33f9e7ca *README.md
770f38477c6be0f5dd48af3f770b781d *build/vignette.rds
8cbc3b84764ad5105fc337bf285c6142 *data/comm_a.rda
cce1ec27d3f2bd9f240a53b608538f88 *data/comm_b.rda
908f84c1572ac5bd56af139b1a373c35 *data/envi.rda
c1bdb3e75ef65ec1ef9a335f15c442d3 *data/phylotree.rda
45d35b84402439bfe5595f8190ec2fae *data/traits.rda
b95ba1c3b9ec23352f0e98e94f9c9f3f *inst/doc/benchmarks.R
1d541b32a49acfde83c137c78c0dc4d4 *inst/doc/benchmarks.Rmd
71fdc1d2b106b37be8df9d68f1f47186 *inst/doc/benchmarks.html
60edf2754c7ae5f5c578b03b93d59c03 *inst/doc/pglmm.R
5c0d4b6d6583e7efa14837eeb6453e40 *inst/doc/pglmm.Rmd
d97da3ee56e370435d8c58cc5a5e6e3d *inst/doc/pglmm.html
338061ba5eab08603b806876d18940b5 *inst/doc/plot-re.R
7521bb70f5921f55ae8175d153291547 *inst/doc/plot-re.Rmd
9ab497bba475614054917ce13a6f589c *inst/doc/plot-re.html
64439e1cc8cbf205a1db3d98cb98d940 *inst/extra_data/comm_large.rds
d3d7d2586a7482dd012b150179a16309 *inst/extra_data/phylotree_large.rds
030895e69a7b6c0d93e1912563446849 *man/align_comm_V.Rd
1234217cf3fd8da018c85ddf0a199d69 *man/binaryPGLMM_ape.Rd
7d32c93906092404924b7a0abedc69ac *man/boot_ci.Rd
d027ce2a174099516f7ba097d1cb26fb *man/comm_a.Rd
6ceed1d3190f30bc6f4457cd7c53fcbb *man/comm_b.Rd
0837b4577b2b96e3af760a32f8c7b2ef *man/cor_phylo.Rd
0f064e3b1217c25c8b45ba8311646f1f *man/envi.Rd
7313145eccb6ec9fbf1c2a5757fb2d80 *man/fitted.communityPGLMM.Rd
b850564edc1d85cc77499c9bdb8776eb *man/fixef.Rd
2875d7a21f7159ad9d36df7851291001 *man/get_design_matrix_pglmm.Rd
e6dee794f33f4c9eef3fe3d3174cb8ae *man/match_comm_tree.Rd
273fa1ac15f8940c83a5113c34833afd *man/nin.Rd
8bd69f80a576403d7eb4781a732e5ffc *man/pcd.Rd
d3fb28ae8372f8596b80f35a67b77c0d *man/pcd_pred.Rd
1e4d3a4858b2b2e103d57bd0da9c719f *man/pglmm-matrix-structure.Rd
d2c2499098eccb15961759df55f74669 *man/pglmm-plot-data.Rd
b742dd29019451a235e8d4ae2e1c54d1 *man/pglmm-plot-re.Rd
1d9dfe791020a55358b7ab36035b3ab9 *man/pglmm-predicted-values.Rd
5c362dfafa82b79aeef2138ad187b560 *man/pglmm-profile-LRT.Rd
51c986537a76b68fdff6de2d1b4fd533 *man/pglmm.Rd
a6d09e960de73abaa5be308674076c9e *man/phylotree.Rd
83f84a035026e5682eb66ed8de81b7ea *man/prep_dat_pglmm.Rd
41ddbfe699ddb7246d919c3e0e2a617a *man/print.communityPGLMM.Rd
cba99e3e7f64924bdbce1744832565fb *man/psd.Rd
5e1ad192f75e218768bdd3ea0ddf38f9 *man/ranef.Rd
ac3fb3b5e78768f877e402b0d865b4aa *man/refit_boots.Rd
658bda8ccbf479862a1b38360b4c2a72 *man/residuals.communityPGLMM.Rd
4cd0df5ffa2f642ef957c80818ce2fae *man/rm_site_noobs.Rd
53056041dde0f944348ec31c27b000d4 *man/rm_sp_noobs.Rd
839efdbfa932ad6bd1e4b481925f012a *man/summary.communityPGLMM.Rd
ff51692ec3ab2c76b75d2c4132fd274d *man/traits.Rd
3a6a9329f18f5c23b63ecec8d699f62a *man/vcv2.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
3b91159514caccada8d8805fe3c969ed *src/Makevars.win
50a66bb997e3869c77b9acf0b625ffca *src/RcppExports.cpp
45aeaa2c1599c55c16f7016305128b48 *src/binaryPGLMM.cpp
efe19447568e310fc0ab234fa71290d3 *src/cor_phylo.cpp
0cd58c7f3d7f595c59b903ce66bb3177 *src/cor_phylo.h
cfdb906749af1ac1af38731d914ed2a9 *src/pcd.cpp
5b3f5d75db0e5b2cb2de7498357e1c12 *src/pglmm_binary.cpp
edf6dbdcae4115bf9edecc4330a1555f *src/pglmm_gaussian.cpp
10229aab29bea61e2cb549d787c7cf77 *src/psv.cpp
9d6339a494d3b9cffda8ee383bf0f0ae *tests/testthat.R
46bdd9e8d2ef5aa77eb518923a13e345 *tests/testthat/test-cor_phylo.R
13733e95c3c321f86d9d5534ef0cc0bd *tests/testthat/test-pcd.R
df459177f66379d7582b54909cb09a9a *tests/testthat/test-pglmm.R
80baad4d302885f081ad86cea664fa4d *tests/testthat/test-psv.R
45a45dfcbb3bea4afafb232ccffeb2b9 *tests/testthat/test-utils.R
2732181d4b5fbe352d7fa936e6c9a5fc *tests/testthat/test_pglmm_utils.R
1d541b32a49acfde83c137c78c0dc4d4 *vignettes/benchmarks.Rmd
5c0d4b6d6583e7efa14837eeb6453e40 *vignettes/pglmm.Rmd
7521bb70f5921f55ae8175d153291547 *vignettes/plot-re.Rmd
