687606b08eec3cf0402463ee8a260f55 *DESCRIPTION
af83d1d307bc6e142db7057b1dc540c8 *NAMESPACE
6b0776a05d22a6a0e851cba157883b45 *R/add.everywhere.R
ab83760e8b04218ecca3fda0990b97c8 *R/allFurcTrees.R
c7ac150f3fe5c2f5f8c43ba714ef2a7b *R/anc.Bayes.R
6573e3cab9190c0152977cc850b24358 *R/anc.ML.R
56b85f7aa49584b6aab2cc75a4232077 *R/anc.trend.R
0676ff6e0a9c20313ef37088dcc65a63 *R/branching.diffusion.R
938700f5c711d35cd5469018fbc07b7b *R/brownie.lite.R
e092561f7dba01386fe102a08a8024a8 *R/brownieREML.R
4e4d9a3046399f39c6bea5bff5d6627a *R/drop.tip.simmap.R
e42f0ab668300d452bcc1e4e12ab3b61 *R/estDiversity.R
803441943ada9faf3fa4c637a34c816a *R/evol.rate.mcmc.R
10011d77713c396305dc6a575eb28d71 *R/evol.vcv.R
2d5d8e26c0acf5ce26304cc727bd76e2 *R/evolvcv.lite.R
7935179a771ca9af09050678e76d8a9d *R/exhaustiveMP.R
bfe9d45e7a126e26d4ea0c10e7851350 *R/fastBM.R
79d5c1bc8b38484815275308c3aa01d5 *R/fitBayes.R
42336f9999b283b597d838b09d1f2657 *R/fitDiversityModel.R
2d2ea5e7e26774f4a6c6b5aaf1120842 *R/ltt.R
1a57f7ae8dcf530cbda30b282d513aa0 *R/make.era.map.R
608ede966296989bc8aa761f5c0ee6ce *R/make.simmap.R
23b9e915f9fc8b9c46d81c573afbbedc *R/map.overlap.R
a661e7b50724fa1e6023c64e82a7cd05 *R/mcmcBM.R
9ba0916b6995df9277336791767f45e3 *R/mcmcBM.full.R
d0ca3cdaed9fe05896b46ed4c15e9e95 *R/mcmcLambda.R
67b1c9912e65cddab14fb9c67f28eb19 *R/mrp.supertree.R
bf754d944a21c90497cb138df44f215f *R/optim.phylo.ls.R
533add6337d35996aacb54b550108135 *R/pbtree.R
536d53eb9362a5fb0437bad71a5c717f *R/phenogram.R
ee44a588b3896a3ac399b99f87484fb7 *R/phyl.RMA.R
223c4a5ea22cf875b0c748f926dd3213 *R/phyl.cca.R
0d64f29449e03cb398815022e3f3d022 *R/phyl.pairedttest.R
e7a448e7da73e2509d26f1d743aa131e *R/phyl.pca.R
6a292da7c4f3579bca33fd9863b4ec6b *R/phyl.resid.R
f1fe30a068d21211aaaa2f18c242b632 *R/phylANOVA.R
0df6241c5cca6db4a5ede9a254dfcba6 *R/phylomorphospace.R
6723be3d90c3bb1acde5b886bdaf23d0 *R/phylosig.R
aeafdf84bd7cc619f3ea4ac3a4b2d32b *R/plotSimmap.R
9824907ab4bc8c87bb529976a39cd17f *R/plotTree.R
20d93417514de8d6caf78fe4f71fc33d *R/read.newick.R
7ed3c7ec495d6bec8d4e8452af266cec *R/read.simmap.R
5109e8b0fb8ccfb68c9d8a71947f8cea *R/reroot.R
afe6e31be39046604a479f8180ddb100 *R/sampleFrom.R
9e907ae06d36a0aa47c98756be6792dd *R/sim.history.R
a453f93ced9541e58cb109e2f0520acd *R/sim.rates.R
c8bfa07dd3238d97fcaafe5a369e5e89 *R/starTree.R
4d55481533d046d11312c9bcaebc7a28 *R/treeSlice.R
2837b7316206703ca7e5d05977dbdae9 *R/vcvPhylo.R
f8b9c547e0cd28c52e7a2ba438e9227d *R/write.simmap.R
147beb0264de8c3079442f36660f7eab *inst/CITATION
c045100ab906377256de49e54f409c40 *man/add.everywhere.Rd
037d504c93392bcb825ede070180aa15 *man/allFurcTrees.Rd
4ea86fc75cc2de629f7a76a791bd804e *man/anc.Bayes.Rd
e82a1063183646dff85f35a4db67156e *man/anc.ML.Rd
ef9ca67474fa0e816af1c41b1197bd71 *man/anc.trend.Rd
951d591b719bc01e2afb6216f29736d2 *man/branching.diffusion.Rd
ce030c4f365792f00b2ebac72d0881e0 *man/brownie.lite.Rd
05395bcf878736a38f4bd0499680524f *man/brownieREML.Rd
8e9ff701367bae65848b46f0b4d76de8 *man/drop.clade.Rd
5c300fbebd2125339657a2a9a4ee6fb0 *man/drop.tip.simmap.Rd
a1ea9b99a300251195b21e5ed1d4ff37 *man/estDiversity.Rd
c4aa314a07333fc01e0a67d210e02440 *man/evol.rate.mcmc.Rd
af9f8070d049f4c50d96d8cff9b32435 *man/evol.vcv.Rd
c4c59386724c6fcfc1a19cfca4eb1c0e *man/evolvcv.lite.Rd
5abb3da8cdc8d7b473692d1152c4370d *man/exhaustiveMP.Rd
4c389f590d3359591505b303dc90d8b2 *man/expm.Rd
d816110bd30afd4629f34f7af1add732 *man/fastBM.Rd
2de9fdcbdcd7edbd05071e775b7fbf77 *man/fitBayes.Rd
feeb79f9989d6457c64051113766a3bb *man/fitDiversityModel.Rd
c707479f721376bff5cf2cf048a6e9c9 *man/gammatest.Rd
994e2aef70f7430adf8cccad06753c91 *man/lambda.transform.Rd
a296bf3a07af0e26e2cdb58893499f33 *man/ls.tree.Rd
91a7cde6c5564696785fd0ef83dc6063 *man/ltt.Rd
f58ea7e2c1245029f35d424762fb3541 *man/make.era.map.Rd
fe1b11730ffb92c4154da0ad4418449b *man/make.simmap.Rd
995dab8256a03b7ddad17e2227efd895 *man/map.overlap.Rd
b56312fa14d5f884980d9a6e5292be5b *man/minSplit.Rd
1e032dd9d384b514bb30fd0cd797469c *man/mrp.supertree.Rd
8e06343dcf53065d766225f0583bb57a *man/nodeHeights.Rd
88af2f37da99c9ae7d97453e1589afe7 *man/optim.phylo.ls.Rd
c82040760b0297a7e994bcdd4b0c2c64 *man/paste.tree.Rd
ac90703ab4a800c37435a44441d09efc *man/pbtree.Rd
09f218ab830e03d1599bce0421faef6e *man/phenogram.Rd
67ab00bea1d0f337e1e9e0b2c6291034 *man/phyl.RMA.Rd
4b814a49683d872e0c1ae2302cb41dbc *man/phyl.cca.Rd
41e368fc24b160cb771d57274e609677 *man/phyl.pairedttest.Rd
109ddd9420fbf1d229e0af777e14cdf6 *man/phyl.pca.Rd
87181f76ac8f01bce9ee344eb7d75630 *man/phyl.resid.Rd
53dd8bcf73b492e62c162d361d7a5322 *man/phyl.vcv.Rd
e2608424e3f214af56856f9809916024 *man/phylANOVA.Rd
a92ed581b5fb7790cd34eb762dbf6e64 *man/phyloDesign.Rd
891a6e4c1d997a259f050b9b5de48454 *man/phylomorphospace.Rd
5088074143d3e91ec39ba53af80ecd59 *man/phylosig.Rd
54f4a356cb50be2d53ddd862ec2d2c0d *man/phytools-package.Rd
f13678fa4b97746d19f435514a4e6447 *man/plotSimmap.Rd
d9c85cfb778cd102c858e8ee32c4c473 *man/plotTree.Rd
8fe8336fac36d153158491eaaf163155 *man/posterior.evolrate.Rd
37f6d7a0b5d8645342945e75b364609a *man/read.newick.Rd
7bd536b5d2a58bd7ecc1ff460a216836 *man/read.simmap.Rd
8b964a16c2dae4bb5adb34e790733315 *man/reorderSimmap.Rd
3b41e4db6b99dae1e825929485373f5b *man/reroot.Rd
c2ddda71568f4ce0e936788c9b7c162b *man/rstate.Rd
75d394eb6a950cc625e3f9be81a8c698 *man/sampleFrom.Rd
e6d3f8634bfe81e74e5ce3b28d1b267a *man/sim.history.Rd
eae1bd7590da36458972f0cfaa848cf9 *man/sim.rates.Rd
8e997f4467048e7a8da84e1a879f6513 *man/splitTree.Rd
a6f1f248cbfbad4354f739bdd1e929d4 *man/starTree.Rd
6dc9479ed5af774297bf998edf4f79dc *man/treeSlice.Rd
75a8e24ac8e6779d95816e99962340b4 *man/vcvPhylo.Rd
7e8dfa3b10debafd7859fb2047b45f9f *man/write.simmap.Rd
