f2d43ade6de10fe714afea927e0e288d *DESCRIPTION
b1da90d99eccc3026250a89f46b0b9e8 *NAMESPACE
6b0776a05d22a6a0e851cba157883b45 *R/add.everywhere.R
ab83760e8b04218ecca3fda0990b97c8 *R/allFurcTrees.R
a118f868d9a5e3025ec4887296da1a59 *R/anc.Bayes.R
74026bdc4881ca0035541dbfb959f686 *R/anc.ML.R
56b85f7aa49584b6aab2cc75a4232077 *R/anc.trend.R
98f72cd71b5241be6395d6d657a83a02 *R/ancThresh.R
cbc7784cba23e6b20efe0f2d21e1de3c *R/bmPlot.R
0676ff6e0a9c20313ef37088dcc65a63 *R/branching.diffusion.R
3df01fc219119f44820bba364f87294f *R/brownie.lite.R
e092561f7dba01386fe102a08a8024a8 *R/brownieREML.R
49e1155003564e047e67ff1f0ef0418f *R/contMap.R
b3aaff1db112fa7734da86108a0c5dd5 *R/densityMap.R
b707fc247b889daacea864a75e0915ed *R/drop.tip.simmap.R
b89f16fe0fd9f3ece78d8d0c83d63d35 *R/estDiversity.R
803441943ada9faf3fa4c637a34c816a *R/evol.rate.mcmc.R
10011d77713c396305dc6a575eb28d71 *R/evol.vcv.R
f882c92e9fe543289287139735677656 *R/evolvcv.lite.R
7935179a771ca9af09050678e76d8a9d *R/exhaustiveMP.R
9894f4104c7750ce0613c2794262d447 *R/export.as.xml.R
5a064045f4e19f2f0615a65f3808e938 *R/fancyTree.R
394a86767d33afe768c8a83334a861a4 *R/fastAnc.R
bfe9d45e7a126e26d4ea0c10e7851350 *R/fastBM.R
0d3ae4cfb0e9fb73cf0cddc37d8d0fb7 *R/findMRCA.R
79d5c1bc8b38484815275308c3aa01d5 *R/fitBayes.R
984fab2bf406a04876c19b8d4d6e4ec7 *R/fitDiversityModel.R
845b53ce3f60f6ed7d3728a67da0ecfc *R/getExtant.R
1dd29274a867dc1643a706f932bb1c82 *R/ltt.R
1a57f7ae8dcf530cbda30b282d513aa0 *R/make.era.map.R
608ede966296989bc8aa761f5c0ee6ce *R/make.simmap.R
23b9e915f9fc8b9c46d81c573afbbedc *R/map.overlap.R
bf6c23b046ed30ee9e9183582aceb070 *R/mcmcBM.R
659b234e9ff4b00daa511a06f72d53d2 *R/mcmcBM.full.R
7df014dbaca615bffd546e1b12ed9d13 *R/mcmcLambda.R
67b1c9912e65cddab14fb9c67f28eb19 *R/mrp.supertree.R
7e33687b42d9ee02d52ae36834f4c122 *R/multi.mantel.R
bf754d944a21c90497cb138df44f215f *R/optim.phylo.ls.R
0b19d29fa65397271369da28cb33ab6a *R/paintSubTree.R
e8770dd2a3a586983f9ad3312f15738a *R/pbtree.R
904f7e8ad755d37a788c6aa6880f4516 *R/pgls.Ives.R
6593779f3ef1a01bcc13523637e16546 *R/phenogram.R
d9c8a79aa3e30d266ddbfc79e192e87a *R/phyl.RMA.R
d98d7bec0847aa686ef9b37b044489bb *R/phyl.cca.R
0d64f29449e03cb398815022e3f3d022 *R/phyl.pairedttest.R
c9f68d7c48ed3961941c58d5059404e3 *R/phyl.pca.R
6eb0e229b575c66b578eb9e3de320e4f *R/phyl.resid.R
f1fe30a068d21211aaaa2f18c242b632 *R/phylANOVA.R
4f23c4c01ee90bfff0773c5b55fe944b *R/phylomorphospace.R
ab5521021127b8b4dce1504d8c90748c *R/phylomorphospace3d.R
2771f0713c2aae54eb30ea78096f738b *R/phylosig.R
2b8a5d65a7ebae3892d3740dbb2db654 *R/plotSimmap.R
03eee952ad6300e7fa50dfd91b42ee19 *R/plotTree.R
20d93417514de8d6caf78fe4f71fc33d *R/read.newick.R
1e407635f553c7f6d95df99024f3199a *R/read.simmap.R
5109e8b0fb8ccfb68c9d8a71947f8cea *R/reroot.R
dff7888f77ef074d81f61822f677015a *R/rescaleSimmap.R
afe6e31be39046604a479f8180ddb100 *R/sampleFrom.R
c8ec5d44f539afb96b494c5557dcda7b *R/sim.corrs.R
9e907ae06d36a0aa47c98756be6792dd *R/sim.history.R
a453f93ced9541e58cb109e2f0520acd *R/sim.rates.R
c8bfa07dd3238d97fcaafe5a369e5e89 *R/starTree.R
ae99c9aeb8f0553d3addf1475ea35562 *R/threshBayes.R
a38bac98b4681cee859750b8193a9a9b *R/treeSlice.R
fdad67f7d24feda97b99ab2f4c5ed18f *R/utilities.R
c6fdcd385bd2cb7778a9afb90465ef02 *R/vcvPhylo.R
f8b9c547e0cd28c52e7a2ba438e9227d *R/write.simmap.R
c6d9cb0dbedb17c4cc0d4e16032da623 *R/writeNexus.R
b882d12a50b9f13670b5c4c3c8277353 *R/xkcdTree.R
a78ed25ad6214b1722858e7289d3d3b5 *inst/CITATION
0c20d95b69a8a7e4749d29cfbc057d9b *man/add.everywhere.Rd
11d595e751b77ad047b23a2f11ffe8ac *man/allFurcTrees.Rd
3ef1ab671f7543f13c51eeb67310ad2e *man/anc.Bayes.Rd
5ba74f8c7f36ff6fc9d77b6a8a4d300f *man/anc.ML.Rd
33f3c602752c5ed8400b56c1bf785640 *man/anc.trend.Rd
37079d6a01e01d6158f8eb1fb5fed0da *man/ancThresh.Rd
df10aa4cbbc4ecb9cbfdb27854d3b61b *man/bmPlot.Rd
2bc00bc310a92030c6473c0b17e5b53a *man/branching.diffusion.Rd
6fde67453b8f53e21f94691034a91e8c *man/brownie.lite.Rd
4e0d62b8caa12be3b954b7bf2b8993f5 *man/brownieREML.Rd
60b9d3a1fc34c1c666525124b00360ab *man/contMap.Rd
6cf026b8da359bfccc5a4fe7d1c4d3df *man/densityMap.Rd
9ceabd15dc852774105aa8942c97dd7e *man/drop.clade.Rd
dbe4cfdd66305d7e4dbcffe487daeed9 *man/drop.tip.simmap.Rd
51cfbaf12c184c35c09fa750ab04a75a *man/estDiversity.Rd
9b00c73ed626be5fca9c5553ed485e87 *man/evol.rate.mcmc.Rd
2e86847bd4880712e24a0cfb9abd90b5 *man/evol.vcv.Rd
e85d60b775e2ea67798b6291478c47f8 *man/evolvcv.lite.Rd
c340579b16cd2aa0487488dcdbd29170 *man/exhaustiveMP.Rd
99aa2f3b5bad4e815c0b719ee2bba455 *man/expm.Rd
158e0b50e75820354900e724889e74b9 *man/export.as.xml.Rd
2901f496ff6bde0f4d61fbe681aee83b *man/fancyTree.Rd
de6f56817ea9a885f1f15f543ecadf74 *man/fastAnc.Rd
8e69de43794daacdcdf22000e1db46b1 *man/fastBM.Rd
847d5a3642edff1abaabd822dc14ace0 *man/fastMRCA.Rd
05cc813332b74f9076a3e46ec55bf222 *man/findMRCA.Rd
48b4575470b9a58c8ec00407401489eb *man/fitBayes.Rd
55d76c8186c4ac5cf2f7af0ccde811aa *man/fitDiversityModel.Rd
35036b3bc42cb12a62b88502794463aa *man/gammatest.Rd
1fd15be1311a88cea40356951a97dc23 *man/getDescendants.Rd
bc7ce1d3742a7aca8c2a4d4c11ca4798 *man/getExtant.Rd
b7341a010735c5854ea729e68139d728 *man/lambda.transform.Rd
b05f73d33842796901da99bdaa753dc6 *man/likMlambda.Rd
f2dcb1f3f579ef58109eddf152d2d44d *man/ls.tree.Rd
310106f2456c5a8792d14e10f90c84c4 *man/ltt.Rd
59eea7d2a4206358d61b2d6290e363d5 *man/make.era.map.Rd
336d6ba1d9ed5e96b04ed9419c956ba7 *man/make.simmap.Rd
134adc93c1a331b21c2d1d7c6d17bc9a *man/map.overlap.Rd
46bb5c090221fca7b1856b609f47d57b *man/matchNodes.Rd
af46089bb0662e8beeb52fae220429e8 *man/minSplit.Rd
493920b526722aec7ee812d564a108f4 *man/mrp.supertree.Rd
216344ef297625f817e5f38ea4d4cd5a *man/multi.mantel.Rd
addc81cdf4c97c420568d3a129cfee79 *man/multiC.Rd
aa96e4f79c6603541eb266e7851836dc *man/nodeHeights.Rd
c53e471440bbef973d577ae3c1d951fe *man/optim.phylo.ls.Rd
ac43988d460a4169380f2b59146062cb *man/paintSubTree.Rd
0a9ad1e536b6eb0d089441eaee7557fd *man/paste.tree.Rd
5b9fdc86c6d9070b9dc1dcb708556cca *man/pbtree.Rd
44303f4a0df9db53d05d1114369d134a *man/pgls.Ives.Rd
ac3481fb78e9ad0fa1e5f857b3653f89 *man/phenogram.Rd
68193b147f0080728ed49ac0690f95ad *man/phyl.RMA.Rd
5c8338cf79f534735ec263870cbaee2d *man/phyl.cca.Rd
e46a28e0021f1b161a2ff803dc3df78c *man/phyl.pairedttest.Rd
5d94a45fd5b282b1d343d321a7d40c53 *man/phyl.pca.Rd
c37f996138a60fba8c32995f8ca344ff *man/phyl.resid.Rd
a4c8f69f99a93d82f1fe839174da165e *man/phyl.vcv.Rd
552e734c0db8048b0587a8f739bfb4dd *man/phylANOVA.Rd
2e39afb0137ae8c1729ce04491f6ae9f *man/phyloDesign.Rd
46e5074464bf913be84a1cf290fd35a8 *man/phylomorphospace.Rd
bd139bea0fd60cdc8d969d64f3ea1ab6 *man/phylomorphospace3d.Rd
f0d0a3c0717765653efb8bb0eb2b2d44 *man/phylosig.Rd
f5d40108e3f07ffa9cb8f3a46d45dac5 *man/phytools-package.Rd
60c6ebd75333a0da87c2af531b1adb1c *man/plotSimmap.Rd
cb747557f2cc922eb4b574d81927cc5b *man/plotTree.Rd
e8485d0253f67bd9cd7103849c207679 *man/posterior.evolrate.Rd
4c2edcd3c63e27423397a90f158a4961 *man/read.newick.Rd
8f2122d45212d27c74f80a004c6cc5e0 *man/read.simmap.Rd
bbf488efac4531a0f06915abd93b69f9 *man/reorderSimmap.Rd
7fb814bafcdcfbee8c836a410ee275d0 *man/reroot.Rd
9c26f56f5e02cadc67db5104071aea20 *man/rescaleSimmap.Rd
64481885746963d3a93a53e9faf5be6f *man/rstate.Rd
a09b4eed3b6b5e0e6bb6c01b9aef1094 *man/sampleFrom.Rd
daf8c1005bd9871e83d2e2a1331307ef *man/sim.corrs.Rd
fccf9afd33be3e4dcf195d5228a70921 *man/sim.history.Rd
799d8ee477fbc51123b825f2ec69566e *man/sim.rates.Rd
4a75520bcd1ed4c9a5e86dba503cf372 *man/splitTree.Rd
4b9695fd93869757fe2bcf6fb9bf9cf1 *man/starTree.Rd
7e1bbe39f9f4a98ff17fd1517ac78300 *man/threshBayes.Rd
5507658c02734b36e5ce82430831f7d8 *man/threshDIC.Rd
e58c22874fa935ef93ab82b49b7e5883 *man/treeSlice.Rd
db214ebc9d2bf08f1a797f0b0adb8df6 *man/vcvPhylo.Rd
d94cebae5fe83040590f0b9911c95f5e *man/write.simmap.Rd
afa1b296b869f91e3086e2efecf7a7f8 *man/writeNexus.Rd
01ef3ae7712b5fa0df67f2abc9c222fe *man/xkcdTree.Rd
