aa931bd3af20eed5a671b1bbc1c74cac *DESCRIPTION
abfac50623ddab27a6c580829fd8d863 *NAMESPACE
8f41acffe68735aa7449b5e66a9812b1 *R/add.everywhere.R
34423edfd64ed1b237c63a0364288bdf *R/add.random.R
f0df86c98d2fd0c6d76f49ca3172d129 *R/allFurcTrees.R
9e3fa7bb801b628a7026052364234602 *R/anc.Bayes.R
18bd5cb3a5cecf1fa1cad04cd6fbd2d4 *R/anc.ML.R
a54afd1cc9c251f5e00a5e8efc5ca924 *R/anc.trend.R
3ce097ddf9ce3d9e2eb38dd981baa22e *R/ancThresh.R
4b82f6c1cb6aedc36ed4fed7be987457 *R/bind.tip.R
cbc7784cba23e6b20efe0f2d21e1de3c *R/bmPlot.R
0676ff6e0a9c20313ef37088dcc65a63 *R/branching.diffusion.R
b95f8c330bf17c808ffbd2304da73ea0 *R/brownie.lite.R
e092561f7dba01386fe102a08a8024a8 *R/brownieREML.R
49e1155003564e047e67ff1f0ef0418f *R/contMap.R
79d98550c4e547d457612b66045952bc *R/densityMap.R
b707fc247b889daacea864a75e0915ed *R/drop.tip.simmap.R
451a5d01bd2ffd05ca11d9e253751eb7 *R/estDiversity.R
7469de53938ca9c617c767bc7ad5b807 *R/evol.rate.mcmc.R
f99319acc891e16d942f80b8b0febf12 *R/evol.vcv.R
b645683560ce499323142e5bb8917e3e *R/evolvcv.lite.R
164c5aba763c4823fae1a2747cbbdde8 *R/exhaustiveMP.R
9894f4104c7750ce0613c2794262d447 *R/export.as.xml.R
454b07ef5e09bb0580dbb5be1d7a8476 *R/fancyTree.R
3051b0baa4d29fc964c63038f61a66b5 *R/fastAnc.R
bfe9d45e7a126e26d4ea0c10e7851350 *R/fastBM.R
0d3ae4cfb0e9fb73cf0cddc37d8d0fb7 *R/findMRCA.R
79d5c1bc8b38484815275308c3aa01d5 *R/fitBayes.R
984fab2bf406a04876c19b8d4d6e4ec7 *R/fitDiversityModel.R
845b53ce3f60f6ed7d3728a67da0ecfc *R/getExtant.R
1dd29274a867dc1643a706f932bb1c82 *R/ltt.R
1a57f7ae8dcf530cbda30b282d513aa0 *R/make.era.map.R
afc6894edbd8990cf3067940ae6b92e1 *R/make.simmap.R
23b9e915f9fc8b9c46d81c573afbbedc *R/map.overlap.R
bf6c23b046ed30ee9e9183582aceb070 *R/mcmcBM.R
659b234e9ff4b00daa511a06f72d53d2 *R/mcmcBM.full.R
9fc1c1054aa693a9ad32044d21e9f8c4 *R/mcmcLambda.R
b040e1eaf64ad302cdbbc1c0cb742cd7 *R/mrp.supertree.R
7e33687b42d9ee02d52ae36834f4c122 *R/multi.mantel.R
af3ee4b2e3a749a9d0040ca6fceb40a5 *R/optim.phylo.ls.R
39dcfe7cb658f1d4cf9ad3f8fb0fbd0d *R/paintSubTree.R
e8770dd2a3a586983f9ad3312f15738a *R/pbtree.R
ab294d8c9b023fe314930627be675030 *R/pgls.Ives.R
3c6be712d3b1142dc73ad6ab7d41beb4 *R/phenogram.R
4db055cf75d6a3d2e7cda5a91cafd137 *R/phyl.RMA.R
d98d7bec0847aa686ef9b37b044489bb *R/phyl.cca.R
067743180672ac2b90d1e160186fe0de *R/phyl.pairedttest.R
c9f68d7c48ed3961941c58d5059404e3 *R/phyl.pca.R
6eb0e229b575c66b578eb9e3de320e4f *R/phyl.resid.R
c1aaeb796e42be5177ecb36c5a6df15c *R/phylANOVA.R
c74de0f211bb863f6d330c48ffc70715 *R/phylomorphospace.R
ab5521021127b8b4dce1504d8c90748c *R/phylomorphospace3d.R
7e17223f27118288d71aeff1f4843c44 *R/phylosig.R
d6276aef56e46a7fe0be09a057f0ae8f *R/plotBranchbyTrait.R
921971bdd7fc83fda22610683f4d8097 *R/plotSimmap.R
c46f92bff5eec9823551a14989893819 *R/plotTree.R
eb798ee8249519bd2afc6c132f24a065 *R/ratebystate.R
20d93417514de8d6caf78fe4f71fc33d *R/read.newick.R
1e407635f553c7f6d95df99024f3199a *R/read.simmap.R
0c233034935b1d82fdf6f8d029a753bd *R/reroot.R
9bf2954f9f66d08f2ace41ae546e123a *R/rerootingMethod.R
c4e18ab88f3a37d448971b81de4fdbfc *R/rescaleSimmap.R
afe6e31be39046604a479f8180ddb100 *R/sampleFrom.R
a734b9387333dc2d9a5ece1f8ee06f98 *R/sim.corrs.R
93eadaa496ee4f08c105476ffdac92aa *R/sim.history.R
f21071a47bc22c9c76ef3136ff4fe821 *R/sim.rates.R
81c463a99ba91e04785a4848d2e5d56b *R/splitplotTree.R
c8bfa07dd3238d97fcaafe5a369e5e89 *R/starTree.R
ae99c9aeb8f0553d3addf1475ea35562 *R/threshBayes.R
a38bac98b4681cee859750b8193a9a9b *R/treeSlice.R
3790c283ab61809e3b55b85ea34d5dbd *R/utilities.R
c6fdcd385bd2cb7778a9afb90465ef02 *R/vcvPhylo.R
7282f87b3143db28b7e982e86d90b6e5 *R/write.simmap.R
8a960b2dfaa3924ae71d485d68ea66b3 *R/writeAncestors.R
c6d9cb0dbedb17c4cc0d4e16032da623 *R/writeNexus.R
b882d12a50b9f13670b5c4c3c8277353 *R/xkcdTree.R
0eb3bef3466bd6d264c669571621c2d1 *inst/CITATION
f303aa31e40de6ef9764b8be8e1176a9 *man/add.color.bar.Rd
0c20d95b69a8a7e4749d29cfbc057d9b *man/add.everywhere.Rd
6f58d2d039540c91cc923fad0adbf17d *man/add.random.Rd
11d595e751b77ad047b23a2f11ffe8ac *man/allFurcTrees.Rd
24c22a5e1ae2e35bf6097d96e8531b5f *man/anc.Bayes.Rd
730290c8426ad5280aa3ba541c101925 *man/anc.ML.Rd
d643181a570733dd04bfb342b3f06fe2 *man/anc.trend.Rd
7ff7dcdb419b393598bbd3445e568c1d *man/ancThresh.Rd
1ad4c8aef29dcd52e41e647f8637817c *man/applyEdgeLengths.Rd
89af25534419d0f64bbf03ce5434dc4a *man/ave.rates.Rd
ddfc19e049b5fa61d8410bc5358674c0 *man/bind.tip.Rd
df10aa4cbbc4ecb9cbfdb27854d3b61b *man/bmPlot.Rd
2bc00bc310a92030c6473c0b17e5b53a *man/branching.diffusion.Rd
5f297884242988ea0fde7a1738fd983d *man/brownie.lite.Rd
4e0d62b8caa12be3b954b7bf2b8993f5 *man/brownieREML.Rd
d7747f4640b9aad99ca45240cd439c27 *man/contMap.Rd
95e6fe6b188abe0e5f0277acd97294ec *man/countSimmap.Rd
6cf026b8da359bfccc5a4fe7d1c4d3df *man/densityMap.Rd
8768c16dc1bdf307668944cbd3c10d30 *man/describe.simmap.Rd
9ceabd15dc852774105aa8942c97dd7e *man/drop.clade.Rd
dbe4cfdd66305d7e4dbcffe487daeed9 *man/drop.tip.simmap.Rd
51cfbaf12c184c35c09fa750ab04a75a *man/estDiversity.Rd
0bd6567072d75f5d54983f8670d78a39 *man/evol.rate.mcmc.Rd
6af3a0a651322024ddadd6b77e3f142e *man/evol.vcv.Rd
e85d60b775e2ea67798b6291478c47f8 *man/evolvcv.lite.Rd
c340579b16cd2aa0487488dcdbd29170 *man/exhaustiveMP.Rd
99aa2f3b5bad4e815c0b719ee2bba455 *man/expm.Rd
2cd3a676b7bfd2f95e17ec899a50aaff *man/export.as.xml.Rd
a5d05598236c7e40df1c40eb78479b5d *man/fancyTree.Rd
201657729d3885f6e38ad0809753ca49 *man/fastAnc.Rd
8e69de43794daacdcdf22000e1db46b1 *man/fastBM.Rd
847d5a3642edff1abaabd822dc14ace0 *man/fastMRCA.Rd
05cc813332b74f9076a3e46ec55bf222 *man/findMRCA.Rd
713480214ca2c085f02a3f6666fa679a *man/fitBayes.Rd
55d76c8186c4ac5cf2f7af0ccde811aa *man/fitDiversityModel.Rd
8eb2faf42f85aa549ea9559815f8300c *man/gammatest.Rd
1fd15be1311a88cea40356951a97dc23 *man/getDescendants.Rd
bc7ce1d3742a7aca8c2a4d4c11ca4798 *man/getExtant.Rd
8c77a108d6d851ec836139518633184f *man/getSisters.Rd
5ac795cf959b273145a852d2aa98a2c4 *man/getStates.Rd
b7341a010735c5854ea729e68139d728 *man/lambda.transform.Rd
b05f73d33842796901da99bdaa753dc6 *man/likMlambda.Rd
f2dcb1f3f579ef58109eddf152d2d44d *man/ls.tree.Rd
7f3a03c539b6c836e03b8dad1a0061c7 *man/ltt.Rd
979873156ecfae921d13bd4be0f9d88d *man/make.era.map.Rd
9870261a7fa5b609be56223799c039bd *man/make.simmap.Rd
134adc93c1a331b21c2d1d7c6d17bc9a *man/map.overlap.Rd
01272f01dee476f2d6a61790985e4b5e *man/matchNodes.Rd
af46089bb0662e8beeb52fae220429e8 *man/minSplit.Rd
83c63a93669f9d520a213fba6a007440 *man/mrp.supertree.Rd
216344ef297625f817e5f38ea4d4cd5a *man/multi.mantel.Rd
addc81cdf4c97c420568d3a129cfee79 *man/multiC.Rd
aa96e4f79c6603541eb266e7851836dc *man/nodeHeights.Rd
c53e471440bbef973d577ae3c1d951fe *man/optim.phylo.ls.Rd
ba9bf5f012e316ea99787816f5d1ad9c *man/orderMappedEdge.Rd
ac43988d460a4169380f2b59146062cb *man/paintSubTree.Rd
0a9ad1e536b6eb0d089441eaee7557fd *man/paste.tree.Rd
a7e0b22f9b076f7fc7088c58433355c9 *man/pbtree.Rd
66659e729577384d3e32967d21b36ea7 *man/pgls.Ives.Rd
c57daef8d005e77f4ed25cf67b7beeda *man/phenogram.Rd
76bc6b3692e8ad0490f752778447e39e *man/phyl.RMA.Rd
3c69095985f56d9a66d2cd23e8805ad4 *man/phyl.cca.Rd
e46a28e0021f1b161a2ff803dc3df78c *man/phyl.pairedttest.Rd
c5de415f30c5b38f98406f093eae54fe *man/phyl.pca.Rd
35c671ea924eda76e14a555d9fbd707d *man/phyl.resid.Rd
6ac5b2712551ba8a1efea55c43cd5793 *man/phyl.vcv.Rd
552e734c0db8048b0587a8f739bfb4dd *man/phylANOVA.Rd
2e39afb0137ae8c1729ce04491f6ae9f *man/phyloDesign.Rd
1674288aa7f5fe4c7655d62d048605be *man/phylomorphospace.Rd
1c93169c810e14ff0492dfb3e7a4dcbc *man/phylomorphospace3d.Rd
b8880941b5282424f8dca153777e9fa1 *man/phylosig.Rd
0a6373513621bc26c8573db69d7bba54 *man/phytools-package.Rd
c21b236dddbfae5e97cd4f72fe8d22a4 *man/plotBranchbyTrait.Rd
93f62b9e4ea4c9f78af67ef12c63a8b2 *man/plotSimmap.Rd
5a5dcfa23e18d176d948bfb8d8eb09d4 *man/plotThresh.Rd
cb747557f2cc922eb4b574d81927cc5b *man/plotTree.Rd
24731323989bb63db854863bd66461a5 *man/posterior.evolrate.Rd
f1e7fb49afcbb107963bfb564e9b2a42 *man/ratebystate.Rd
4c2edcd3c63e27423397a90f158a4961 *man/read.newick.Rd
8f2122d45212d27c74f80a004c6cc5e0 *man/read.simmap.Rd
bbf488efac4531a0f06915abd93b69f9 *man/reorderSimmap.Rd
c672522843985e169c9533777d9c66ff *man/repPhylo.Rd
7fb814bafcdcfbee8c836a410ee275d0 *man/reroot.Rd
0a37b1504de3b48902a7d0eb53704792 *man/rerootingMethod.Rd
9c26f56f5e02cadc67db5104071aea20 *man/rescaleSimmap.Rd
8d605598ce2d97565f1fa808e068f210 *man/roundBranches.Rd
a896dede75ef3df6fd8ccbad291d0bd0 *man/rstate.Rd
a09b4eed3b6b5e0e6bb6c01b9aef1094 *man/sampleFrom.Rd
daf8c1005bd9871e83d2e2a1331307ef *man/sim.corrs.Rd
fccf9afd33be3e4dcf195d5228a70921 *man/sim.history.Rd
99d81a5a2eee07413fe3642f48cf6a53 *man/sim.ratebystate.Rd
799d8ee477fbc51123b825f2ec69566e *man/sim.rates.Rd
4a75520bcd1ed4c9a5e86dba503cf372 *man/splitTree.Rd
23fd3ae61df1ef7353eff7174e2bc355 *man/splitplotTree.Rd
4b9695fd93869757fe2bcf6fb9bf9cf1 *man/starTree.Rd
7e1bbe39f9f4a98ff17fd1517ac78300 *man/threshBayes.Rd
bed6b46a7a9a53efdb315eda263e96bb *man/threshDIC.Rd
b82b2a0b1c996f10bbf8dcc8c10780b8 *man/threshState.Rd
e58c22874fa935ef93ab82b49b7e5883 *man/treeSlice.Rd
d7f0b5596928fd4c310687dc6671714b *man/untangle.Rd
db214ebc9d2bf08f1a797f0b0adb8df6 *man/vcvPhylo.Rd
22b83d369bb58103adbd86d8a61b59dd *man/write.simmap.Rd
b27c3ebe470cc8acb24d1c7543b55f36 *man/writeAncestors.Rd
bc608dc192e64b69a38310d616db2074 *man/writeNexus.Rd
f0a6a44e22743af61d4eae6cbe2cda94 *man/xkcdTree.Rd
