# Generated by roxygen2: do not edit by hand

export("%>%")
export(artificialFRW1Germline)
export(assignAlleleClusters)
export(extractASCTable)
export(germlineASC)
export(inferAlleleClusters)
export(inferGenotypeAllele)
export(recentAlleleClusters)
export(zenodoArchive)
exportClasses(GermlineCluster)
exportMethods(plot)
import(circlize)
import(dendextend)
import(ggplot2)
import(grDevices)
import(graphics)
import(jsonlite)
import(methods)
import(utils)
importFrom(Biostrings,DNAStringSet)
importFrom(DECIPHER,DistanceMatrix)
importFrom(R6,R6Class)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(alakazam,getAllele)
importFrom(alakazam,getFamily)
importFrom(alakazam,getGene)
importFrom(data.table,"%chin%")
importFrom(data.table,":=")
importFrom(data.table,.N)
importFrom(data.table,.SD)
importFrom(data.table,CJ)
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setkey)
importFrom(data.table,setorderv)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,as_data_frame)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,combine)
importFrom(dplyr,count)
importFrom(dplyr,count_)
importFrom(dplyr,data_frame)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,do)
importFrom(dplyr,filter)
importFrom(dplyr,funs)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,rename_)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,summarize)
importFrom(dplyr,summarize_)
importFrom(dplyr,summarize_at)
importFrom(dplyr,transmute)
importFrom(dplyr,transmute_)
importFrom(dplyr,ungroup)
importFrom(magrittr,"%>%")
importFrom(methods,setOldClass)
importFrom(methods,signature)
importFrom(rlang,.data)
importFrom(splitstackshape,cSplit)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,binom.test)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,setNames)
importFrom(stats,weighted.mean)
importFrom(tigger,findUnmutatedCalls)
importFrom(tigger,readIgFasta)
importFrom(zen4R,download_zenodo)
