2240715d03120fcd9d0927f0b0cab50e *DESCRIPTION
e3af39db08a58574d4b24015c2cb976f *NAMESPACE
218244a1bcbdc8f28cd44abfb99a3ec9 *NEWS
25b4c0749fa834cc84b1efd576750779 *R/00-loadESCAdata.R
a32f8e7c284091fbc3c95aa538f04fde *R/01-impute.R
3e908c331171ee330eb24d83b0f81c41 *R/01-multiOmics.R
e4c87bc29a4768e411c0d59a69ac6725 *R/02-fitCoxModel.R
4441cd410dd1c231477842a9ef72909b *R/03-manyCoxModels.R
1bfb52c01e4e21636ad1ea2bc4cf7b18 *R/04-extend.R
593e0e7c00f9c16aafb3280893f6cb92 *R/05-interpret.R
72ac7a0da56b126056b95e362017ca91 *R/06-weights.R
a4d410762fbc6ab397fa82054499518d *TODO
ae99b3e0ef2452f0ee8e5d8e27fc1b8f *build/vignette.rds
4c11c25f730f44e8eeaa52b7c82977e3 *data/mirESCA.rda
f9041a1554f725927c26bd384ded30ff *data/tfESCA.rda
76b769442a19c3a60410722ec3b7b717 *inst/Figure/methods.png
321b78fced9b7776e3ad1718d3d2a89e *inst/GeneLists/ClinicalBin1.txt
9e5e84c6b07a7b508df26b0b686957b4 *inst/GeneLists/ClinicalCont1.txt
e61464e5ffa856e30b5d3543f4e83656 *inst/GeneLists/MAF1.txt
32ff843612b52f1c6fc26134760bfdba *inst/GeneLists/Meth4501.txt
c34b7fa9fd8a64c98a49f79a1e01e102 *inst/GeneLists/Meth4502.txt
360d9915d0b5a1c5c2fcfd808aa5628f *inst/GeneLists/Meth4503.txt
12f21ab091adddda1cada1b21afdb551 *inst/GeneLists/Meth4504.txt
4e86c38c2401c08a4ec8190625a63f26 *inst/GeneLists/RPPA2.txt
157d9804e1e7a3ca27bc4ff8c611868d *inst/GeneLists/RPPA3.txt
6fa6e010b7ee743c3fae3ad46cb233ce *inst/GeneLists/allGenes.txt
deef7ef4602ddd9a9db778a2587580b1 *inst/GeneLists/finalGenes.txt
03f39d27d730d3a9d300d8f37c164ed1 *inst/GeneLists/mRNASeq1.txt
d3ac853d063db14d2b2d66e66abc3f42 *inst/TGOUT/ClinicalBin1.tsv
4b2ec21258276dc0ba207e14ed66b7e9 *inst/TGOUT/ClinicalCont1.tsv
f4961a3b9a00ac157c56ea72e8b8ad64 *inst/TGOUT/MAF1.tsv
07fd0331910eb6e4acdfc1c2a6da6008 *inst/TGOUT/Meth4501.tsv
fe1d0f6404b6d8d3237e952a2e6cc438 *inst/TGOUT/Meth4502.tsv
af93de2312f5fea9cfc85002458e90c7 *inst/TGOUT/Meth4503.tsv
ba490ebb0b1024337171f3c2cb70f2ae *inst/TGOUT/Meth4504.tsv
006603fb210e6dcf58bae5de1824a3f4 *inst/TGOUT/RPPA2.tsv
1983745f879ac78da768f0f68e7ecc33 *inst/TGOUT/RPPA3.tsv
7155edc4a188b123c87bf5cddec7069a *inst/TGOUT/allGenes.tsv
7598a25953416d6febddfa19963d76d9 *inst/TGOUT/finalGenes.tsv
410b4c7ed58bca006cb8c4e9bb9dd1f8 *inst/TGOUT/mRNASeq1.tsv
1cad9a1953295837c7d6ee0ebf1e5a52 *inst/bib/bioinformatics.csl
f341339fe895e8346fe89e1bf09a5041 *inst/bib/escaMOFA.Rmd
067074ea772a7c68db48b0d8275a5804 *inst/bib/interpret.Rmd
ba6cfc83d5a5fadadc075e2fdddfb719 *inst/bib/jss.csl
724ac76c286c6053bdd3fd1d818642da *inst/bib/plasma.Rmd
5fc30b24aa8d775a14467ec9ed4a4895 *inst/bib/plasma.bib
00c4e01dc7287de834da1a0b585215f3 *inst/bib/plasma.enl
6b55fc369fb8bffda38b07881f83be5c *inst/bib/plasma.log
a734e943dbaf116f447dd419aaac82a9 *inst/doc/interpret.pdf
9de5c1a35cab90db09392fd251eab41a *inst/doc/interpret.pdf.asis
d66b7af00f11e2e815b1e1af581d8a20 *inst/doc/plasma.pdf
a7f5782475e3e5a033f6574ce152acb4 *inst/doc/plasma.pdf.asis
ac4a29b71b4f924e221e71189677badc *inst/perl/toppgene.pl
1446ea43a7b20768ffab8d211235f7bf *man/00-imputation.Rd
1c53557c7bed06b0685e8f6a95344c60 *man/01-MultiOmics.Rd
ce68538c568d94bd7ab5954c362e622f *man/01-TCGA-ESCA-data.Rd
90d5350517564991c2846caaefebc5e1 *man/02-fitCoxModel.Rd
c3bde3652b494ced87ca5f2e0b0263b2 *man/03-manyCoxModels.Rd
94c46eeed82e34f4b5d256dcd4979a0c *man/04-plasma-class.Rd
24737511603061cfb748a201acf252d4 *man/04-plasmaPredictions-class.Rd
f0d8365381a47e50fa525c7e74bc4781 *man/05-Contribution-class.Rd
4142a4fbd033159b95cc948e3b5aa09f *man/06-CombinedWeights-class.Rd
5b503742c3c711bca872a16ea328b715 *man/07-esca-type-data.Rd
1416a3be51e41c6565ad7975f8dd5ccb *tests/test01-MO.R
78f926636348b5499353f882cd32fcff *tests/test02-fitCox.R
4102f73ce7b6b9cbc49c61f6796748d0 *tests/test03-multiplePLS.R
80df6974abed1b01f3ed8f647f1a3114 *tests/test04-plasma.R
1463ee33ce906d0e3a88fb921969dbd4 *tests/test05-interpret.R
9de5c1a35cab90db09392fd251eab41a *vignettes/interpret.pdf.asis
a7f5782475e3e5a033f6574ce152acb4 *vignettes/plasma.pdf.asis
