2009-03-11  kingaa

	* [r78] man/eulermultinom.Rd, src/eulermultinom.c: replace "euler
	  infelicity" Rprintf statements with warnings
	* [r77] inst/CITATION: add CITATION file

2009-02-03  kingaa

	* [r76] inst/ChangeLog:
	* [r75] DESCRIPTION, R/mif.R, man/mif.Rd, man/pomp-methods.Rd,
	  man/trajectory-pomp.Rd, src/euler_sir.c, src/sir.c: changes to
	  documentation and default arguments so as to bring these into
	  agreement. (discrepancies revealed by Kurt Hornik's extensive
	  codoc testing).

2009-02-01  kingaa

	* [r74] inst/NEWS, man/nlf.Rd:

2009-01-31  kingaa

	* [r73] DESCRIPTION:
	* [r72] inst/ChangeLog:
	* [r71] man/nlf.Rd: documentation fix

2009-01-28  kingaa

	* [r70] R/plot-pomp.R: remove default for the (unused) 'y' argument
	* [r69] man/nlf.Rd: fix typos

2009-01-27  kingaa

	* [r68] inst/ChangeLog:
	* [r67] DESCRIPTION, R/trajectory-pomp.R: 'odesolve' has been
	  replaced by 'deSolve'
	* [r66] inst/examples/euler_sir.R, inst/examples/euler_sir.c,
	  inst/examples/sir.R, inst/examples/sir.c: moved 'sir.*' examples
	  to 'euler_sir.*'
	* [r65] DESCRIPTION, R/plot-pomp.R, inst/ChangeLog,
	  inst/examples/sir.R, man/pomp-methods.Rd: add package 'subplex'
	  as dependency
	  run examples that compile native code only if
	  Sys.info()['sysname']=='Linux'. This replaces the previous test
	  that .Platform$OS.type=='unix', which resulted in errors under
	  some versions of MacOSX.
	* [r64] inst/ChangeLog:

2009-01-26  kingaa

	* [r62] inst/ChangeLog:

2009-01-25  kingaa

	* [r61] DESCRIPTION: minor documentation corrections
	* [r60] man/mif-class.Rd, man/mif-methods.Rd, man/mif.Rd:

2009-01-17  kingaa

	* [r59] inst/ChangeLog:
	* [r58] tests/ou2-nlf.Rout.save:
	* [r57] tests/ou2-mif.Rout.save, tests/ou2-nlf.Rout:
	* [r56] tests/ou2-nlf.R, tests/ou2-nlf.Rout.save:

2009-01-16  kingaa

	* [r55] DESCRIPTION: add functionality for parameter estimation via
	  nonlinear forecasting, method due to Stephen P. Ellner and Bruce
	  E. Kendall
	* [r54] NAMESPACE, R/mvnorm.R, R/nlf-funcs.R, R/nlf-guts.R,
	  R/nlf-lql.R, R/nlf-objfun.R, R/nlf.R, data/ou2.rda,
	  inst/ChangeLog, inst/doc/compiled_code_in_pomp.pdf,
	  inst/doc/intro_to_pomp.pdf, man/nlf.Rd, tests/ou2-nlf.R,
	  tests/ou2-nlf.Rout: add functionality for parameter estimation
	  via nonlinear forecasting, method due to Stephen P. Ellner and
	  Bruce E. Kendall
	* [r53] R/pfilter.R, man/pfilter.Rd: add 'verbose' option to
	  'pfilter'

2008-08-25  kingaa

	* [r52] data/ou2.rda, inst/ChangeLog,
	  inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.pdf:
	* [r51] R/mif.R, man/mif.Rd, tests/ou2-mif.Rout.save: error trap in
	  'mif': 'rw.sd' must have names
	* [r50] DESCRIPTION, inst/NEWS, man/euler.Rd: better documentation
	  in 'euler.Rd'

2008-08-19  kingaa

	* [r49] inst/NEWS:

2008-08-15  kingaa

	* [r48] data/ou2.rda, inst/ChangeLog,
	  inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.pdf:
	* [r47] tests/ou2-mif.Rout.save: fix bug in Euler step
	* [r46] tests/sir.R, tests/sir.Rout.save: improve test of SIR model
	* [r45] tests/logistic.Rout.save:
	* [r44] DESCRIPTION, src/euler.c: fix bug in Euler step

2008-08-14  kingaa

	* [r43] DESCRIPTION: make description more descriptive
	* [r42] inst/examples/sir.R: put trajectory computation into SIR
	  example

2008-08-13  kingaa

	* [r41] data/ou2.rda, inst/doc/compiled_code_in_pomp.pdf,
	  inst/doc/intro_to_pomp.pdf:
	* [r40] inst/ChangeLog:
	* [r39] inst/examples/sir.c: cosmetic
	* [r38] DESCRIPTION, NAMESPACE, R/aaa.R, R/pomp.R,
	  R/trajectory-pomp.R, data/ou2.rda, inst/examples/logistic.R,
	  inst/examples/sir.R, inst/examples/sir.c, man/mif-class.Rd,
	  man/pomp-class.Rd, man/pomp.Rd, man/skeleton-pomp.Rd,
	  man/trajectory-pomp.Rd, src/skeleton.c, tests/logistic.R,
	  tests/logistic.Rout.save, tests/sir.R, tests/sir.Rout.save: add
	  support for computing trajectories of the deterministic skeleton
	  the skeleton must now be specified when the pomp is created: if
	  the pomp is a discrete-time system, 'skeleton.map' is used to
	  specify its deterministic skeleton; if it is a continuous-time
	  system, 'skeleton.vectorfield' is used.
	  the new method 'trajectory' will, in the first case, iterate the
	  map to produce an itinerary and in the second case, it will call
	  'lsoda' from the now-required 'odesolve' package to compute the
	  trajectory.
	  some changes to the basic 'pomp' structure have been made to
	  facilitate all this.
	  specifically, a new slot, 'skeleton-type', distinguishes between
	  discrete-time and continuous-time systems

2008-08-01  kingaa

	* [r37] inst/ChangeLog:
	* [r36] inst/ChangeLog:
	* [r35] inst/examples/logistic.R: make dprocess depend on 'log'

2008-07-31  kingaa

	* [r34] inst/NEWS:
	* [r33] DESCRIPTION:
	* [r32] R/mif.R: improved error handling in mif
	* [r31] man/pomp.Rd: fix inaccuracy in documentation of rmeasure
	  and dmeasure arguments

2008-07-29  kingaa

	* [r29] inst/NEWS:
	* [r28] DESCRIPTION:
	* [r27] R/mif.R: bug fix in convergence record storage
	* [r26] R/mif.R: cosmetic

2008-07-26  kingaa

	* [r25] DESCRIPTION, inst/ChangeLog, inst/NEWS,
	  inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.Rnw,
	  inst/doc/intro_to_pomp.pdf, src/ou2.c: bug fix in
	  "intro_to_pomp.Rnw"

2008-07-25  kingaa

	* [r24] R/pfilter-mif.R:
	* [r23] inst/NEWS:
	* [r22] inst/NEWS:
	* [r21] data/ou2.rda, inst/ChangeLog,
	  inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.pdf:
	* [r20] tests/ou2-mif.Rout.save: no need to set rw.sd for
	  parameters that aren't estimated
	* [r19] inst/examples/logistic.R, inst/examples/rw2.R,
	  inst/examples/sir.R, tests/examples.R: add a test of the examples
	  in 'inst/examples' to the 'tests' directory
	  modify the sir.R example so that it attempts to build a
	  shared-object library only if .Platform$OS.type=='unix'
	* [r18] inst/doc/intro_to_pomp.Rnw, tests/ou2-mif.R: no need to
	  include zeros in 'rw.sd'
	* [r17] man/mif.Rd: improve documentation regarding arguments to
	  mif
	* [r16] R/aaa.R: remove a whole lot of stuff that somehow got in
	  from pomp.devel
	* [r15] inst/examples/sir.R: fix up R-function version
	* [r14] R/aaa.R: improve error handling: fix language and use
	  sQuote, dQuote where appropriate
	* [r13] DESCRIPTION:
	* [r12] R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R,
	  R/euler.R, R/init.state-pomp.R, R/mif-methods.R, R/mif.R,
	  R/particles-mif.R, R/pfilter.R, R/plot-pomp.R, R/pomp-methods.R,
	  R/pomp.R, R/rmeasure-pomp.R, R/rprocess-pomp.R,
	  R/simulate-pomp.R, R/skeleton-pomp.R, R/sobol.R: improve error
	  handling: fix language and use sQuote, dQuote where appropriate
	* [r11] R/mif.R: trap as error parameters (including ivps) which
	  are to be estimated but which have zero rw.sd

2008-07-22  kingaa

	* [r10] inst/NEWS:
	* [r9] inst/ChangeLog:
	* [r8] inst/ChangeLog, inst/O_CHANGES:

2008-07-20  kingaa

	* [r7] DESCRIPTION, NAMESPACE, R/aaa.R, R/bsplines.R,
	  R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R, R/euler.R,
	  R/eulermultinom.R, R/init.state-pomp.R, R/mif-methods.R, R/mif.R,
	  R/particles-mif.R, R/pfilter-mif.R, R/pfilter.R, R/plot-pomp.R,
	  R/pomp-methods.R, R/pomp.R, R/rmeasure-pomp.R, R/rprocess-pomp.R,
	  R/simulate-pomp.R, R/skeleton-pomp.R, R/sobol.R, inst,
	  inst/ChangeLog, inst/GPL, inst/LICENSE, inst/NEWS, inst/doc,
	  inst/doc/Makefile, inst/doc/compiled_code_in_pomp.Rnw,
	  inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.Rnw,
	  inst/doc/intro_to_pomp.pdf, inst/examples,
	  inst/examples/logistic.R, inst/examples/rw2.R,
	  inst/examples/sir.R, inst/examples/sir.c, inst/include,
	  inst/include/pomp.h, man/bsplines.Rd, man/dmeasure-pomp.Rd,
	  man/dprocess-pomp.Rd, man/euler.Rd, man/eulermultinom.Rd,
	  man/init.state-pomp.Rd, man/mif-class.Rd, man/mif-methods.Rd,
	  man/mif.Rd, man/ou2.Rd, man/particles-mif.Rd, man/pfilter.Rd,
	  man/pomp-class.Rd, man/pomp-methods.Rd, man/pomp-package.Rd,
	  man/pomp.Rd, man/rmeasure-pomp.Rd, man/rprocess-pomp.Rd,
	  man/simulate-pomp.Rd, man/skeleton-pomp.Rd, man/sobol.Rd, src,
	  src/bspline.c, src/dmeasure.c, src/dprocess.c, src/dsobol.c,
	  src/euler.c, src/eulermultinom.c, src/initstate.c,
	  src/lookup_table.c, src/ou2.c, src/pomp.h, src/pomp_fun.c,
	  src/pomp_internal.h, src/resample.c, src/rmeasure.c,
	  src/rprocess.c, src/sir.c, src/skeleton.c, src/sobol.f, tests,
	  tests/logistic.R, tests/logistic.Rout.save, tests/ou2-kalman.R,
	  tests/ou2-kalman.Rout.save, tests/ou2-mif.R,
	  tests/ou2-mif.Rout.save, tests/ou2-simulate.R,
	  tests/ou2-simulate.Rout.save, tests/rw2.R, tests/rw2.Rout.save,
	  tests/sir.R, tests/sir.Rout.save: initial revision
	* [r6] data/ou2.rda:
	* [r5] data:

2007-06-25  stefan7th

	* [r1] README, ., R, man, www, www/index.php: Email in Readme
	  changed

