7c1c90683c11456df0df4cac5b772b2e *DESCRIPTION
5e4912551f4e7ebbdb09cfeab4d204db *NAMESPACE
6ca1f0aedd7b119d813081c69117018d *NEWS
9112a9c833bc6a03ab6f2eb3ce6254f6 *R/Index_calculations.r
ba4f13bedb17f96bfa5bcb1468440987 *R/aaaMLGclass.R
1477e079fb89f32c48d1d39eae69e8f6 *R/aaaMLGmethods.R
e391ad49e08d748149f4b254f8e9cb73 *R/amova.r
378dfe215bbe332342f044733ac81353 *R/bitwise.r
22a43bc2062c989f7d73dedd985942d6 *R/bootstraping.R
a5525cfc66c519bcc2f23f285caeccc3 *R/bruvo.r
9e88da5235de4d78c7feaf81d66e150b *R/classes.r
522130a53cf053539daf0a51b1b8e348 *R/data_subset.r
7b85b3b6d3c4c07046c2a9928f564c68 *R/deprecated.R
a9e180ce598b3516de8ec004b8d44134 *R/distances.r
793443d064ccc416d7a29b01afdfc265 *R/file_handling.r
157c20e749a24ecab7862469ff2027e4 *R/filter_stats.R
f03ca05c56b949d4c5c0e44e7ebbac87 *R/global_memory.r
22876129e8810d38f641ede9d4f9bef8 *R/imsn.R
19a80a544f2b31d1acd8af6f01a3dc09 *R/internal.r
bcc4ec72f19a9006366fd25453892996 *R/internal_methods.R
cf03550c80092ea3095b3d2dc0ad53bd *R/messages.r
0100477642726e32e2aa68ecbc56b3bf *R/methods.r
b329b3e7d33a8ec494f40a2e3ddee4de *R/mlg.r
d8b320d7bc7b1066682b03f1f7f872a0 *R/poppr.R
13e09623ac5abed2db8060bec1eef0ec *R/print_methods.r
af8d8ebe0c42239c73bd4c8a92ee1323 *R/round_robin.R
f3d1522863331f2350a49790a998156e *R/sample_schemes.r
6211859b0b36154ab88d6fc7e199dcd1 *R/sandbox.r
9595c15d3f39e7749722d520291a224d *R/visualizations.r
e99a23e270ad48416cb9631167c486da *R/zzz.r
3e61882b89d57a519857ee39fda2f231 *README.md
19cff025efdb681f8d1a41a9460c85fc *build/vignette.rds
2b8cae6678323c47a7fff5b80925b5ad *data/Aeut.rda
58ec81a9378e578e50abcd56340fcd46 *data/Pinf.rda
839dda7af297fd0e47efbca2cdf9df27 *data/Pram.rda
477985bc9116ddbe2f90dc608a0a4f06 *data/monpop.rda
047c94a45cec9ebce1603db71168780d *data/old_Pinf.rda
9bc3a21c44ee46a6712df3df6117a32a *data/old_partial_clone.rda
866ba5e45a4dfd2e50cd2742e6a0f593 *data/partial_clone.rda
8ec80a9d12500fae4b76b2118049a5b1 *inst/CITATION
a0fa733767939e0f10abc78da70b1e82 *inst/doc/algo.R
19e5869645e30aac9ae17c98f4efb323 *inst/doc/algo.Rnw
8cea8b316ba8801288452fcd7bf00c8d *inst/doc/algo.pdf
6d333aacdeaaf4e69d3d5f4875e56a70 *inst/doc/how_to_migrate.R
eaef9ae0a5d2bbc21f7f339323ebfac7 *inst/doc/how_to_migrate.Rnw
c5e58688bc21b781c92e39789f6f2a74 *inst/doc/how_to_migrate.pdf
ec08824d120f1dfd79f4d4640d7c4e38 *inst/doc/mlg.R
24e139c82d43afbc4db92de192114bcf *inst/doc/mlg.Rmd
d05013c442322228b4d19b6485f1c8d5 *inst/doc/mlg.html
7ea87daf2a71ce4f106c903349a2c05b *inst/doc/poppr_manual.R
336d5bba108093eedc08a1b765c2d872 *inst/doc/poppr_manual.Rnw
a26d850fdbec0c16c0638abe4c295474 *inst/doc/poppr_manual.pdf
2e1ba95b8537037a21ed3cb8d507f28d *inst/files/rootrot.csv
502952e55e2a1dff9eb742ac05282e12 *inst/files/rootrot2.csv
ba2b4146131f64837c485ce100bbdbf1 *inst/files/simulated.dat
546af5c3356583384531af861a07a181 *inst/shiny/msn_explorer/server.R
6d54ec6c316665789571ac8d57a7b18f *inst/shiny/msn_explorer/ui.R
c4600500f25c9fdc966ffba7b22eca11 *inst/shiny/utils.R
3ce4b4c50e6dc26b9f120422dfe22855 *man/Aeut.Rd
05e36cb693d86ff63d265c1dffbe92dd *man/MLG-accessors.Rd
c5ef6e8b76f59b41ab7587171f61aee4 *man/MLG-class.Rd
981c16c1ac1a3c30e67bdcd8ee07fbdf *man/MLG-method.Rd
3b5c7a40372df49798a12c5c99498dcd *man/Pinf.Rd
bd16dc53882f4971c6688eac88f3d28d *man/Pram.Rd
b656dab5702bf0c69b722ccce8fe7162 *man/aboot.Rd
5be073d7dbbbff8d51aa7f3bcf478e6f *man/bitwise.dist.Rd
a2df1073dcec2c3588232944ab2006db *man/bitwise.ia.Rd
8f81863b81d0abd25fcf666b15b503c6 *man/bootgen-class.Rd
b88018481b0df15dc86a9a6015072a16 *man/bootgen-methods.Rd
73fd474269b10fe1693d0924d098e4a0 *man/bruvo.boot.Rd
7d57ec6da1d9332f2919d61723c70b90 *man/bruvo.dist.Rd
b385cf1f5e28bc62212c2238fddb88fe *man/bruvo.msn.Rd
b991885b032aba9c7ace98954f85d795 *man/bruvomat-class.Rd
0d8af73e0f0710159e60b37496515d4e *man/bruvomat-methods.Rd
b8703365d9502de167992c1371859e97 *man/clonecorrect.Rd
1fba440e0c32606a1085f9e9888ef29f *man/coercion-methods.Rd
a270e5d29cd07cdb376f79c0d0ff6962 *man/cutoff_predictor.Rd
505f392b180f56e061e5625fb8329e7d *man/deprecated.Rd
13587ef0830125e9a8722332e3dd6401 *man/diss.dist.Rd
93e99323e00ae02bf15684f3d4fc1ca2 *man/diversity_boot.Rd
93b1accca6f15099f79085dfb2fed4c8 *man/diversity_ci.Rd
abcbd09e1bda7ce9e26de1d86eea25d1 *man/diversity_stats.Rd
d073ea74d5988b09f1985708ccb7efc7 *man/filter_stats.Rd
f12273d8b0f8a42daf50d3ba539fa1ae *man/fix_replen.Rd
e5b0cd9258333b2024b7314665eb1c92 *man/genclone-class.Rd
cdc65d2fb6a81c8f2c3a88292bcdf54b *man/genclone-method.Rd
85e93b91696c6f226a2b965c853160f5 *man/genetic_distance.Rd
1e2de4998d9beaf157b3d2eba0a137cc *man/genind2genalex.Rd
b1a4e4dcf9784592b0652a5303199f0d *man/genotype_curve.Rd
95c108032bd498c00066f88577d911d6 *man/getfile.Rd
b1b285a826e580418592900b445e62a9 *man/greycurve.Rd
3b2da8655df7771d457e2ba8aabff8e1 *man/ia.Rd
c84aca51a544895c76b567b5b3285639 *man/imsn.Rd
df045c3de936c17328f3825845ff7649 *man/info_table.Rd
921bbba2f1b17fe2e360710ad39b7675 *man/informloci.Rd
5cf87ad9f6ec38d6a47ea99ce8271739 *man/is.clone.Rd
b448ce074fb91e6413172dcda52b850d *man/levels-methods.Rd
83ee25d6d8b5b02aa0b912dc8f847b89 *man/locus_table.Rd
b8176aaa00a07c228b25339344264cc0 *man/missingno.Rd
7745fe142c1b3a4cd2ef98d7124ab9a2 *man/mlg.Rd
2163127a80ca63500b29a9a698819c95 *man/mlg.filter.Rd
c04205302f7831cf79e73760bbbd82f3 *man/mll-method.Rd
0bb43da80aaa9bd0f2782065a0455515 *man/mll.custom.Rd
ed4a2975314e70d59d36bd84f24bf59f *man/mll.reset-method.Rd
7b37ec175f18b21e8e8e7b77df99d682 *man/monpop.Rd
f87f19c1e700f2a4e7b339043744f1cb *man/old2new_genclone.Rd
1840032bf2efca40fe4f353854929f5d *man/partial_clone.Rd
cb367ec6c9bdce40b125db14ea329455 *man/pgen.Rd
39b6a65a172991262f5f15d0aeaca78e *man/plot_filter_stats.Rd
882868e244839488350e6a2162efab20 *man/plot_poppr_msn.Rd
861bfaf00598808942dc5bd20d575f1c *man/poppr-package.Rd
52fae41ce383ba33a6ff35dbe01f2964 *man/poppr.Rd
06a8e693aaf3ca212d2ee77de0e788de *man/poppr.all.Rd
ccb6c3474dc6b2ac54e1af603fff90d2 *man/poppr.amova.Rd
c88081944c63820223dd977b599f54d2 *man/poppr.msn.Rd
45036d411fad13715ce72fb6af4aece0 *man/poppr_has_parallel.Rd
c408ddf67981272fe432055e9f3c0f85 *man/popsub.Rd
19d5a244fa92dda2a654c9de27c4ed81 *man/private_alleles.Rd
273549e9af5613f571ec22ec7691daf4 *man/psex.Rd
81a6bcbbc9e336e3aa42ceda937809f3 *man/rare_allele_correction.Rd
18f7ad3b7dd11397d0731d10ffb3f6fd *man/read.genalex.Rd
bfcc4d353baf17566aefd46ebb0117fb *man/recode_polyploids.Rd
8bb40c9ccc26047bf81b6d9880729c39 *man/rraf.Rd
56ae555838e45d423d3476d3378a3727 *man/rrmlg.Rd
279a043c9aaca563ff82b3630b6143a1 *man/samp.ia.Rd
bdd17a6d415240a4b3dc6b1f8aae0a8f *man/shufflepop.Rd
604d6d53cdb8989fbae9c8c31a455253 *man/snpclone-coercion-methods.Rd
b5302dc5ab6457d8d8bd3c083c7f0bbb *man/snpclone-method.Rd
2392d28128401e5f9510af49bdade02e *man/test_replen.Rd
98d13a1ca319d953b6677e0984cabf3a *man/unique-methods.Rd
a1ebf1abe899f52a49a28e55862a2d7a *man/win.ia.Rd
95e3011e37d9dde0d75f3a3819b2acd3 *src/Makevars
384359d2088d2f040f0ca540070e39ed *src/bitwise_distance.c
24780e80c26dc89572d82a550776c825 *src/mlg_clustering.c
30b188b7c58916426289689d06256d86 *src/mlg_counter.c
f7d4c4ea47c14ae4b4ebdd7726d9ccc8 *src/msn.c
d66fbe8fb282162026e64017202a024d *src/omp_test.c
deb50e8cfbb87ddadbec3c1c07923a8f *src/permut_shuffler.c
fe9563d7e2f56968b85a771e78f95b1a *src/poppr_distance.c
0a561f03a96806fcea2a55fb110f55a0 *tests/test-all.R
719deacd4678736af03199e1028aa3ab *tests/testthat/test-MLG-class.R
0db2ddd4a60e186c1a4b0d98dd6f3183 *tests/testthat/test-amova.R
ace4ea13b12934c5a322e1a4757b4c05 *tests/testthat/test-bitwise.R
58d250cdc6356299dec2c3ca0ae43a21 *tests/testthat/test-colors.R
0d24934f9b7b3d8981e94050547b0da9 *tests/testthat/test-deprecated.R
2a7bc0d58d7875af9600c12e35cebe83 *tests/testthat/test-distpop.R
1427498ca00f25ece1706eca5cbd975d *tests/testthat/test-errors.R
11ecda85541446940fe5ebfff2482156 *tests/testthat/test-filter.R
7afccf4508dfaed848e0b89ef6bc8d87 *tests/testthat/test-genclone.R
2bf50759890d560395a14c1803a64b3c *tests/testthat/test-greyscale.R
26457680e1ab2125e3fa1ac81846e58e *tests/testthat/test-import.R
b680f15b86155c8866a51bd92d167ae0 *tests/testthat/test-informloci.R
4c5a5ca268e586058dba406426a37b86 *tests/testthat/test-locustable.R
453157f171953d8cc20b73f60a86e77c *tests/testthat/test-missing.R
14ba06e98d085dd3a05c87920794987d *tests/testthat/test-mlg.R
f3b782a14c9bce8dc890f309687e2434 *tests/testthat/test-msn.R
796d8710e9b73179cd4cebc5d2417e91 *tests/testthat/test-plots.R
0938d684f78403fc0d47161385e1903c *tests/testthat/test-polyploids.R
a2a6fc1fe40593483d7178614d9e4ec7 *tests/testthat/test-poppr.R
d1b7cf39b7a8f8395aaaf19b64e419a6 *tests/testthat/test-popsub.R
81ea806ba0d2a7ddaf8861b10e76dd18 *tests/testthat/test-private.R
10e9eef9fde53d7eae6e7134d5937afd *tests/testthat/test-round-robin.R
f85f108a8f7e7ad510497271bf0b421c *tests/testthat/test-sampling.R
5e684016e9723dfd20be49972540702a *tests/testthat/test-trees.R
ee1dcfe62da2bd31ec777b05b38042e2 *tests/testthat/test-values.R
e4a0cea34697587ee0be5861a6eab861 *vignettes/algo-concordance.tex
19e5869645e30aac9ae17c98f4efb323 *vignettes/algo.Rnw
8db7d28430ff1b4dcaccd7cae4f6b718 *vignettes/authordate1.bst
7945cb85e09bec325c62ae56a0139e98 *vignettes/bruvo_upgma.png
96edc2720669416d1a5b05d5e6c27d3e *vignettes/getfile.pdf
0048c3bd90fb7cfbb08c0f8bd83b705e *vignettes/how_to_migrate-concordance.tex
eaef9ae0a5d2bbc21f7f339323ebfac7 *vignettes/how_to_migrate.Rnw
96402ec4d48cc75e0e03ebf813560289 *vignettes/jalapeno-poppers.pdf
24e139c82d43afbc4db92de192114bcf *vignettes/mlg.Rmd
b3e8603f1fd9bbba61be2efa87a58f82 *vignettes/mod_dat.png
76cbd9dbae26be6cea8279e9235b3655 *vignettes/msg.txt
4ca8584a1a55548392bbe25ab8a407f4 *vignettes/nancybruvo.rda
fb16fcda45a8ae6b20a619676b43d69f *vignettes/pnas.bst
124e31e6398b215b071aff6b6087d131 *vignettes/poppr_manual-concordance.tex
336d5bba108093eedc08a1b765c2d872 *vignettes/poppr_manual.Rnw
cabffd757636fdd164aa75d1efaaf24e *vignettes/popprlogo.png
8109e09afdd1606ddd6bdce4a39c48ec *vignettes/rootrot2.png
4305074dafb5e60b495bf6d6550f81e1 *vignettes/the_bibliography.bib
87835dec033340eac11ef23e2ee9476d *vignettes/unmod_dat.png
