e59b25c1c8691c796d5df35eafc63aa3 *DESCRIPTION
5a6b3cadd19da9dfd01c615bb07ab72f *LICENSE
d197cfa760be4dad6626d88a89a06720 *NAMESPACE
1ce8a0a34d16da4cd532ee09350e6e2a *R/collapse_snps_by_gene.R
790f83fedb7bb858f1d70290b66937e1 *R/data.R
d2d686fe9d4530c22612ddef9a3ea93c *R/dup_snps_in_overlapping_genes.R
92b3ed784ed56f17c661b6a81f3b5430 *R/format_inputs.R
18b6bb0f46c350337fdc45f2a58475d2 *R/generate_allele_matrix.R
18e6199d49858846709279779025da1a *R/preprocess_tree_and_vcf.R
084aa293305d2c95116c7dd699621048 *R/prewas.R
b1106aa7da01b153afefcf4bee0c033b *R/reference_alleles.R
d30c9410f7ecf569882ee2ae1cc20305 *R/split_multiallelic_snps.R
4669fd2266ac24a9cef912568a6dd470 *R/validate.R
62b1f333a8bbd8011260a7f1ad8c2185 *README.md
e4fc324f664e7399a78d04d3b7e74d0f *build/vignette.rds
adcfd0f301d315e72426fba777a23f39 *data/gff.rda
16526b2808a76981fae49a1388171fbe *data/outgroup.rda
6bcf4a0f8c300883f1051e53c43d6ec6 *data/results.rda
b4dc0fa899ed4cad9ac48e29eef8b572 *data/tree.rda
231ab84bffdd9d3c5ed3f40e3e0b5466 *data/vcf.rda
e38ac17b5b79c5f1b784cd01e2b41452 *inst/CITATION
6535238cac7cfe2af4dcaae64622f4cc *inst/doc/getting_started_with_prewas.R
48dee66c2d91b8d374186789eb0e3419 *inst/doc/getting_started_with_prewas.Rmd
43706d51996240911ac38ab76d4ea558 *inst/doc/getting_started_with_prewas.html
f641dcc434394cb94a363a125f8690d4 *man/gff.Rd
389ddfe6d34d03ba52c526d899a6b08f *man/outgroup.Rd
c9ec66d5d5c3da920cbbbbb619256013 *man/prewas.Rd
fe8afced21e1656d8032494a28411575 *man/results.Rd
99fddd0ccba36d2ae29b0b9c9eb7f9b9 *man/tree.Rd
5e5be5ab7462d055e6af15fe700001fb *man/vcf.Rd
2ffa9550eb9d25e4d38304394b7576b6 *tests/testthat.R
723c88fd4ee416e4cac66af84d87cf52 *tests/testthat/test-collapse_snps_by_gene.R
ba53dc2eb2c32120db96fab2f61703ee *tests/testthat/test-dup_snps_in_overlapping_genes.R
d5b29c51861b5196e9b75a289da09efe *tests/testthat/test-format_inputs.R
3d54ccdad164ee831dbbc0a4b0597b98 *tests/testthat/test-generate_allele_matrix.R
d8e37425a28cab369ded660a9daab085 *tests/testthat/test-preprocess_tree_and_vcf.R
e816d5224725fd655fdc22e948ebbf93 *tests/testthat/test-prewas.R
94f26e309a3905401ff1ef9f494ba2e4 *tests/testthat/test-reference_alleles.R
385280c689be26b1ad234afc0f4779e3 *tests/testthat/test-split_multiallelic_snps.R
da5b90b24dca7265c41314a09c5245f2 *tests/testthat/test-validate.R
f00a9aa70c2e46e5408ed8b6d8adb8d0 *vignettes/Figure_1.png
20f632036cda214dfdb205bafd65eb8b *vignettes/Figure_S1.png
ef8085f23f7e7e29e82a1b9c8922bbfa *vignettes/Figure_S3.png
48dee66c2d91b8d374186789eb0e3419 *vignettes/getting_started_with_prewas.Rmd
