0b76f82afd2ecce1f6c48ee8eab919de *DESCRIPTION
3a925589a8f6807c545af095ca1a7086 *LICENSE
b1fadbc41f91e31ccfe30656bf6f79a4 *NAMESPACE
5571d6f19756dc53b20b1d0da34baef2 *NEWS
4decf64706b2ffe6868324750a59fb87 *R/desc01AAC.R
f78b626a8c9c3e854840d95dd9e0769e *R/desc02DC.R
a662e1251464b5bee0d08ab1f9412747 *R/desc03TC.R
62b102a30013cba6c87db62d05e16f73 *R/desc04MoreauBroto.R
c1ea50aeeb47899590a205f2c450ff77 *R/desc05Moran.R
ec6eb4359afeca34ed881db46051abac *R/desc06Geary.R
5a782a902eb9e67f35bbe81222cf3faa *R/desc07CTDC.R
ee6af5e015bb896aad7be46bdc9f1898 *R/desc08CTDT.R
23fc84673a5a5b69625b4429bad88d7d *R/desc09CTDD.R
a4b75a7965cfdd82e370f360de20fa33 *R/desc10CTriad.R
f677e219ff1378ad7ec67417a05c9b33 *R/desc11SOCN.R
fb8a849ad5ade0a3d91cfc026f80d0a6 *R/desc12QSO.R
51ec8036a09c978a8a0a9cd57a4c519d *R/desc13PAAC.R
cb34ccc73cd6ece393fdc6e501e69886 *R/desc14APAAC.R
447491a7b75b9b35933a1e9aa288d545 *R/misc01readFASTA.R
f355225fa69d03de7ff5b46bd35bb509 *R/misc02readPDB.R
7f7334f81ffcb0025caba1daa6f69af7 *R/misc03protcheck.R
e6fcb37ac59a721a79e97b461bfb2dbc *R/misc04protseg.R
f95509aa58cc7ffc1e795ffd1fabf126 *R/misc05getUniProt.R
987489038b2f02087c8bfa00abde4496 *R/misc06acc.R
cb18eb05f32c261839b3d8311e7636b6 *R/par01parSeqSim.R
5448c01eb0a15a21434c6d2cf0a4e947 *R/par02parGOSim.R
6e6d31c64f4cf0f059c516d712cef3fe *R/pcm01extractScales.R
1e87a6c55ada81528433e94ce5f2634f *R/pcm02extractDescScales.R
31c1bbc0a317f739ce84975e20e2de77 *R/pcm03extractPropScales.R
14c89076116ba8249279edceaa1429e8 *R/pcm04extractFAScales.R
739396025b0db668a54af436909f3871 *R/pcm05extractMDSScales.R
c8032dfc6261a17e1d776e0837b94b16 *R/pcm06extractBLOSUM.R
fb3a68e41a0d56a51300ec356ad6aa9c *R/protr-datalist.R
de6ce204e1f277b421787fb049c7742c *R/protr-package.R
fbe34f7bf0a6b045b6d4ea0d1530ce30 *README
9174af5ec34e9fae3ca5a65b79b62376 *build/vignette.rds
74fd2419e84eb552d3d7bf73b5f12180 *data/AA2DACOR.rda
5b7c6f94b51a6cc85f679be46f8ca65a *data/AA3DMoRSE.rda
950a7207428adbf07025b3ea572ca17e *data/AAACF.rda
4203a744b06cc6d4d092fd44978fb1e2 *data/AABLOSUM100.rda
98ef4230c3ede64cc0f553b66b42c477 *data/AABLOSUM45.rda
d5c768c167c8576867c20de62030e3b8 *data/AABLOSUM50.rda
315986a4d4ec8307369d01e87c48a883 *data/AABLOSUM62.rda
e54c9332a0647029d24f60721345031c *data/AABLOSUM80.rda
94fc7c9344f718ce131af54429247390 *data/AABurden.rda
3c5a76840812febe22ec1201f8327fea *data/AACPSA.rda
fd12e4bda6ed3b63b9f7e8b48aeb45ab *data/AAConn.rda
f8a9e8d2156c0594a3627cb3e13687f1 *data/AAConst.rda
6271d5667f368f5e44df2c3dad6cdc61 *data/AADescAll.rda
d4abc40bb18cd6eefa4eea3278d67b72 *data/AAEdgeAdj.rda
81ef809ecf130e9ad4a781b4db1cd0ca *data/AAEigIdx.rda
78aaa7c32d779ae8629c68fb5e00250d *data/AAFGC.rda
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fe1d8b062c9f818b277fe1d42c97dbd5 *data/AAGeom.rda
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31c26f7333f4590a28cd1f2033f8f196 *data/AAMOE2D.rda
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74d94a749d98f5b469c42713065db798 *data/AAMetaInfo.rda
a78805067601b819e7da557c20a0b93b *data/AAMolProp.rda
18bc963fda844b819dd26df22154ef26 *data/AAPAM120.rda
f6a62229b8fc278ae2e4372a5a8dcd08 *data/AAPAM250.rda
e9bf133d41e73382cdab31e266a880ab *data/AAPAM30.rda
eee718d631033184beffa3f620b2f3e1 *data/AAPAM40.rda
50221d8d338b3353dec10a6a4c6fd14b *data/AAPAM70.rda
ce7e34c6f0e41061fcbd152d71e4657c *data/AARDF.rda
55a3b6a3bf6921d2aa04f449927e761e *data/AARandic.rda
5206e73c17abdf7ca505c5ef044a9804 *data/AATopo.rda
629742679f494f564d681b3bd25b4f7a *data/AATopoChg.rda
cd06e7f0cd64b800197fb41332eddc95 *data/AAWHIM.rda
e4dc18863083c330da419217c919c2e7 *data/AAWalk.rda
fe761e0c115a58ab00a61ad6c4f8801e *data/AAindex.rda
9427c036183f135d2bbb40021e64a354 *inst/CITATION
a40f57878e701754451f2826d082f3b3 *inst/doc/protr.R
76aad26e83b0484bcb59943764468870 *inst/doc/protr.Rnw
16cb8f9a43f077c08af657f0082f5b12 *inst/doc/protr.pdf
ca35c56c0c379f292f8fab68b3a19f61 *inst/examples/protr-package-ex.R
e9a8c531da4011cd6c79e837c7ca9775 *inst/protseq/4HHB.pdb
4a16b7ca86e201cec2c42382c4445180 *inst/protseq/P00750.fasta
dc85c304db0d96038b7cdab71913b2dc *inst/protseq/P08218.fasta
3bacfe7684c62676c828bb7d22c25ef0 *inst/protseq/P10323.fasta
4e16519c3091af55bba78c73ccb5ada4 *inst/protseq/P20160.fasta
4fc1d897c523a5634e1b0a166d9b21ec *inst/protseq/Q9NZP8.fasta
f4cc22e4b007a23c12d0be0d77cc99dd *inst/protseq/extracell.fasta
8ee3aee7929db8ea3941fc4e7dc54d06 *inst/protseq/mitochondrion.fasta
0c58ef02dc11e90eab4d304185ef7df3 *inst/sysdata/AAidx.csv
4b58694e15ff7e2952b9884c34fd4c57 *inst/sysdata/Grantham.csv
b69fe9c3517b1bb04d79fa1833c35363 *inst/sysdata/OptAA3d.sdf
7957cc59a12a8726b53d21149df781f9 *inst/sysdata/Schneider-Wrede.csv
4c7a4ddaa21ef948cfd018d89d94a82e *man/AA2DACOR.Rd
3ee521d0e34a6e54ed56041177c2bb33 *man/AA3DMoRSE.Rd
3b1b371c79e7a3820a16b10f4c4b7430 *man/AAACF.Rd
d976c294ee11f72064c5a3b731bc066f *man/AABLOSUM100.Rd
63170fd60d94c8e46920e6081af1c506 *man/AABLOSUM45.Rd
aec6da2014aeb76692dbe33ef9338752 *man/AABLOSUM50.Rd
833412255577218fb6f0deb3032cce89 *man/AABLOSUM62.Rd
a36b1201fd1e4e0c21129492e38fa850 *man/AABLOSUM80.Rd
83d8a5791b8447133604422e70ea428f *man/AABurden.Rd
47ee59277f795a27c431dea0d90b34e7 *man/AACPSA.Rd
a8f63a46d6d43cf2de6e9f3c178aeec4 *man/AAConn.Rd
87b1f10912c5f4bc6e3765aaf828e7e8 *man/AAConst.Rd
3893742af213a075b6ed0e161f3dda11 *man/AADescAll.Rd
615f289707616a18edb01f93676f2250 *man/AAEdgeAdj.Rd
d496e33c08a87880a91cd196e1b3313a *man/AAEigIdx.Rd
91d8bfefa789493ce2e5cdf58ba8646d *man/AAFGC.Rd
58cd902f9aa9c6e4b8f7bb2108fc2708 *man/AAGETAWAY.Rd
cc9b8b2f127ddf9e4557db981cf7b649 *man/AAGeom.Rd
8507017889fd50470e6f41c830db67ee *man/AAInfo.Rd
910c2bd849ae31f218b23d870de3ecc3 *man/AAMOE2D.Rd
6f435bd3ca0b8544c78d96297480c7f5 *man/AAMOE3D.Rd
397ba3ebb6ded1dd5cf6bd00de0637b6 *man/AAMetaInfo.Rd
27575f3488f2074b34e746f38d2b0d49 *man/AAMolProp.Rd
f4c536e4b742cc13fb8c9d3620bb846f *man/AAPAM120.Rd
fb82025ad806f5c3e9c8a75f1d3794b0 *man/AAPAM250.Rd
38df95df78bcdcb49ea9532466932cf6 *man/AAPAM30.Rd
50d7ce7f3cf0beb9ed18d2b5914e1bd0 *man/AAPAM40.Rd
d8d60b6a8627061d6fc3dbc483d0b75c *man/AAPAM70.Rd
4efcce980bff292c721e276937ff4ff0 *man/AARDF.Rd
94d1bb798bc4dda6088ee92d5ca433d8 *man/AARandic.Rd
8c3703156e6576699239492364b0678c *man/AATopo.Rd
502409e68877752982cc883876ae7878 *man/AATopoChg.Rd
5e96754454d9b7612cfa0511529a8163 *man/AAWHIM.Rd
1f5fba87c6a84d3f23505a5b0df18660 *man/AAWalk.Rd
77b5425cd3312cf2f0471a45ae977331 *man/AAindex.Rd
f3acdee56b959e203200277b621b0209 *man/OptAA3d.Rd
ec575c345290ccac627a28b6a19cc4b2 *man/acc.Rd
806b9e924bf98b63295daa9125ac91ea *man/extractAAC.Rd
e86dd1dd64d2f99fe9ff323ae4f49744 *man/extractAPAAC.Rd
576ecbd1a942f6bbfc5b64f610468bec *man/extractBLOSUM.Rd
f53e8a2d48b2d41966e6170004e62086 *man/extractCTDC.Rd
8dd9349353842eca143240403a04b244 *man/extractCTDD.Rd
50eabff45fdbdba5840ac7906da7840a *man/extractCTDT.Rd
125813cd2bb92c101aad5bdba26fb05e *man/extractCTriad.Rd
7699cb90d3c604a95a65d375c72a488e *man/extractDC.Rd
9f238274e2b40c1fba0be1d536b87a43 *man/extractDescScales.Rd
dded22fd53a2f68465f0e85e0453aaf0 *man/extractFAScales.Rd
7f52a39bafffc58dff8d5ee270269f7a *man/extractGeary.Rd
4637976bf508560f60c91995e09c21db *man/extractMDSScales.Rd
8bcee51e01e1014771a95f78a5c68bea *man/extractMoran.Rd
c255bd4238252fce5c13317d433abc61 *man/extractMoreauBroto.Rd
6f2e9699cb1b6de722d56fac60933e82 *man/extractPAAC.Rd
5582477f291498091e870796f2c71d94 *man/extractPropScales.Rd
803d5e681b1ce2495ee4581a8e8afdbd *man/extractQSO.Rd
5311ec9901364322545a5a4cd1879795 *man/extractSOCN.Rd
79d60a0f4c1764c6b10d38cebe72463e *man/extractScales.Rd
ee9ca259a4bb816a51232207fc806ace *man/extractTC.Rd
ff531947182e00e544eec0b6319ab4e5 *man/getUniProt.Rd
d2f84758ec997c8c75ef567356b7eeaf *man/parGOSim.Rd
8559185add2b9fc66ec8ba7dcf878aef *man/parSeqSim.Rd
7c266b05f87ef4218bac37657b265627 *man/protcheck.Rd
2e32a22847059649df6c82f648f7e232 *man/protr-package.Rd
8a4e407b5d046ed06b9c9081894d295c *man/protseg.Rd
0d6ee8aa2fe2b2f9eb21db29caccdd61 *man/readFASTA.Rd
9a4df18885c571c3156cb163815c7c57 *man/readPDB.Rd
f4dbfe79fe3536101d17672055b62a3a *man/twoGOSim.Rd
d55fc69e950474b8a36f4af0c4a9b581 *man/twoSeqSim.Rd
a8b92f7ece00a96c4b1c3ed99997a6b7 *vignettes/fig/AAindex.pdf
9cd0f701809c1de6eb369ece652cbb95 *vignettes/fig/APAAC.pdf
24117eed39299675686d5533b15e4cf6 *vignettes/fig/CTD.pdf
eacbe38823569968d7e4413412fc9cab *vignettes/fig/PAAC.png
1aa13d2372e2581dbd9164c13e5898f2 *vignettes/fig/QSO.png
87067dceab1764429e1f5ca7f83fb6f2 *vignettes/fig/ctriad.pdf
909d7c3ef95eca552daadc4116caf3de *vignettes/fig/logo-panel-text.pdf
bfefbe1e89dc7e4966676ef0c30f8e1c *vignettes/fig/protrweb.png
2e53c3a9280f6c3fe9db261ffb8ab18c *vignettes/fig/roc.pdf
76aad26e83b0484bcb59943764468870 *vignettes/protr.Rnw
4feab236c423b66b5cb14c18fbc47aa4 *vignettes/protr.bib
