655acc4d319cd519f78e3cb40eb54b2c *DESCRIPTION
3a925589a8f6807c545af095ca1a7086 *LICENSE
81cdd015f88efb05ab5215c5df83760e *NAMESPACE
69a8cade16e198d8c71c1803eb27fac6 *NEWS
4decf64706b2ffe6868324750a59fb87 *R/desc01AAC.R
f78b626a8c9c3e854840d95dd9e0769e *R/desc02DC.R
a662e1251464b5bee0d08ab1f9412747 *R/desc03TC.R
51dff466db5dd8651334a99ed40071cd *R/desc04MoreauBroto.R
be97b908379513629febfe664218d168 *R/desc05Moran.R
ae7797a63880ac808fdb68894cd3b0bf *R/desc06Geary.R
5a782a902eb9e67f35bbe81222cf3faa *R/desc07CTDC.R
ee6af5e015bb896aad7be46bdc9f1898 *R/desc08CTDT.R
23fc84673a5a5b69625b4429bad88d7d *R/desc09CTDD.R
a4b75a7965cfdd82e370f360de20fa33 *R/desc10CTriad.R
f677e219ff1378ad7ec67417a05c9b33 *R/desc11SOCN.R
fb8a849ad5ade0a3d91cfc026f80d0a6 *R/desc12QSO.R
92e20e20a0baa5aa7554861decc71f64 *R/desc13PAAC.R
726cf8a04cb44ce5f00ae7f15609ba2a *R/desc14APAAC.R
345103cf61cabf3cc26dd38925f54897 *R/desc15PSSM.R
6520b25c398f00f030f806de7572574c *R/desc15PSSMAcc.R
4004b58daf5652720a9ff1337a9ea1f2 *R/desc15PSSMFeature.R
447491a7b75b9b35933a1e9aa288d545 *R/misc01readFASTA.R
f355225fa69d03de7ff5b46bd35bb509 *R/misc02readPDB.R
7f7334f81ffcb0025caba1daa6f69af7 *R/misc03protcheck.R
ffbe1887b9f4a59d0d5bfaf05c2001c4 *R/misc04protseg.R
0a5c2a6f6f2c2b0421556a93f580e58a *R/misc05getUniProt.R
987489038b2f02087c8bfa00abde4496 *R/misc06acc.R
39e0613dcd1efab3565bbdeed7ed1f4b *R/par01parSeqSim.R
7756542120ea574c3a6d53d0595d1078 *R/par02parGOSim.R
6e6d31c64f4cf0f059c516d712cef3fe *R/pcm01extractScales.R
1e87a6c55ada81528433e94ce5f2634f *R/pcm02extractDescScales.R
31c1bbc0a317f739ce84975e20e2de77 *R/pcm03extractPropScales.R
14c89076116ba8249279edceaa1429e8 *R/pcm04extractFAScales.R
739396025b0db668a54af436909f3871 *R/pcm05extractMDSScales.R
c8032dfc6261a17e1d776e0837b94b16 *R/pcm06extractBLOSUM.R
fb3a68e41a0d56a51300ec356ad6aa9c *R/protr-datalist.R
8cea3ded84b38e8395169cf836dbc6c7 *R/protr-package.R
412d90c79741e67d11f633d3a526fc69 *README
20342e6386a1a73e2f9e983ad47f5daf *build/vignette.rds
74fd2419e84eb552d3d7bf73b5f12180 *data/AA2DACOR.rda
5b7c6f94b51a6cc85f679be46f8ca65a *data/AA3DMoRSE.rda
950a7207428adbf07025b3ea572ca17e *data/AAACF.rda
4203a744b06cc6d4d092fd44978fb1e2 *data/AABLOSUM100.rda
98ef4230c3ede64cc0f553b66b42c477 *data/AABLOSUM45.rda
d5c768c167c8576867c20de62030e3b8 *data/AABLOSUM50.rda
315986a4d4ec8307369d01e87c48a883 *data/AABLOSUM62.rda
e54c9332a0647029d24f60721345031c *data/AABLOSUM80.rda
94fc7c9344f718ce131af54429247390 *data/AABurden.rda
3c5a76840812febe22ec1201f8327fea *data/AACPSA.rda
fd12e4bda6ed3b63b9f7e8b48aeb45ab *data/AAConn.rda
f8a9e8d2156c0594a3627cb3e13687f1 *data/AAConst.rda
6271d5667f368f5e44df2c3dad6cdc61 *data/AADescAll.rda
d4abc40bb18cd6eefa4eea3278d67b72 *data/AAEdgeAdj.rda
81ef809ecf130e9ad4a781b4db1cd0ca *data/AAEigIdx.rda
78aaa7c32d779ae8629c68fb5e00250d *data/AAFGC.rda
b45121a25eb42ecb4f8e5815505dc057 *data/AAGETAWAY.rda
fe1d8b062c9f818b277fe1d42c97dbd5 *data/AAGeom.rda
c13402f9c748afa5eac93b09c1e8b598 *data/AAInfo.rda
31c26f7333f4590a28cd1f2033f8f196 *data/AAMOE2D.rda
7827194dbf08a95ea0e2ac1dad00372b *data/AAMOE3D.rda
74d94a749d98f5b469c42713065db798 *data/AAMetaInfo.rda
a78805067601b819e7da557c20a0b93b *data/AAMolProp.rda
18bc963fda844b819dd26df22154ef26 *data/AAPAM120.rda
f6a62229b8fc278ae2e4372a5a8dcd08 *data/AAPAM250.rda
e9bf133d41e73382cdab31e266a880ab *data/AAPAM30.rda
eee718d631033184beffa3f620b2f3e1 *data/AAPAM40.rda
50221d8d338b3353dec10a6a4c6fd14b *data/AAPAM70.rda
ce7e34c6f0e41061fcbd152d71e4657c *data/AARDF.rda
55a3b6a3bf6921d2aa04f449927e761e *data/AARandic.rda
5206e73c17abdf7ca505c5ef044a9804 *data/AATopo.rda
629742679f494f564d681b3bd25b4f7a *data/AATopoChg.rda
cd06e7f0cd64b800197fb41332eddc95 *data/AAWHIM.rda
e4dc18863083c330da419217c919c2e7 *data/AAWalk.rda
fe761e0c115a58ab00a61ad6c4f8801e *data/AAindex.rda
d03a93b0f1688c1a7361153055bf85ea *inst/CITATION
cccbacd5195fbcee29afaa28fe5c8ec9 *inst/doc/protr.R
e69dbe99c69cb6dfdcb9f4b61f13b97d *inst/doc/protr.Rnw
fd6aaca68b6e1a58f47f30b9090872ad *inst/doc/protr.pdf
ca35c56c0c379f292f8fab68b3a19f61 *inst/examples/protr-package-ex.R
e9a8c531da4011cd6c79e837c7ca9775 *inst/protseq/4HHB.pdb
4a16b7ca86e201cec2c42382c4445180 *inst/protseq/P00750.fasta
dc85c304db0d96038b7cdab71913b2dc *inst/protseq/P08218.fasta
3bacfe7684c62676c828bb7d22c25ef0 *inst/protseq/P10323.fasta
4e16519c3091af55bba78c73ccb5ada4 *inst/protseq/P20160.fasta
12d1df65f398dedba3390ad8c4d546f0 *inst/protseq/Plasminogen.fasta
4fc1d897c523a5634e1b0a166d9b21ec *inst/protseq/Q9NZP8.fasta
f4cc22e4b007a23c12d0be0d77cc99dd *inst/protseq/extracell.fasta
8ee3aee7929db8ea3941fc4e7dc54d06 *inst/protseq/mitochondrion.fasta
0c58ef02dc11e90eab4d304185ef7df3 *inst/sysdata/AAidx.csv
4b58694e15ff7e2952b9884c34fd4c57 *inst/sysdata/Grantham.csv
b69fe9c3517b1bb04d79fa1833c35363 *inst/sysdata/OptAA3d.sdf
7957cc59a12a8726b53d21149df781f9 *inst/sysdata/Schneider-Wrede.csv
7bc04307f3c4f444677c0d38de7f0a03 *man/AA2DACOR.Rd
52223ef518bfdf13edbf818f00ed614c *man/AA3DMoRSE.Rd
46c0b69e80924085f33a296a21e93902 *man/AAACF.Rd
fd3a1042c52684a3506ceb14aa2deeb9 *man/AABLOSUM100.Rd
77c307b1641aa04a8b5f6a4412ad8a31 *man/AABLOSUM45.Rd
e2f3216598519062426c8e0fde546d8b *man/AABLOSUM50.Rd
08d2816f20c3ea5392a522b04bf808a6 *man/AABLOSUM62.Rd
6ade7e6415564e396335d711731682b0 *man/AABLOSUM80.Rd
04ee662b9f485af5a484bdcf02fc13ca *man/AABurden.Rd
87fa0314b2bf5c318866a8e27598da03 *man/AACPSA.Rd
ddeba478e567dc5f4718d42cff8d1cde *man/AAConn.Rd
b5dd72e5ac0a97339b884f4254d7e5e7 *man/AAConst.Rd
7ed8a3fe354465ac150df8676863588d *man/AADescAll.Rd
484b8eff0ed3fb562c1da2544f40b757 *man/AAEdgeAdj.Rd
ce0f23285f00cc0a2c9ab71a00d39e50 *man/AAEigIdx.Rd
6da282ac5f34b56aa24cae08c4dd5fc2 *man/AAFGC.Rd
e8f1a2b68c1648fcc8abbf21abde205d *man/AAGETAWAY.Rd
e18d6bf485ae8c238a73c9a7c1a9bace *man/AAGeom.Rd
b4408df5ffa54027f906f12544370f00 *man/AAInfo.Rd
b15a16103f666ef12eb9582026c6862b *man/AAMOE2D.Rd
78e0fbe032579759408ca6d7d65a03f1 *man/AAMOE3D.Rd
6913b1efdc7677ad1334017187e3d7d0 *man/AAMetaInfo.Rd
2f2206f9134c2bfe3e08cfaa05f6a619 *man/AAMolProp.Rd
0080c921014575a476c3bc1d90bb0871 *man/AAPAM120.Rd
23d919e06b05347088984e00599e0952 *man/AAPAM250.Rd
82f20b5ca6c91b2c55be565ae1941a20 *man/AAPAM30.Rd
2224bb15f0327737ab98250876381bb8 *man/AAPAM40.Rd
7e48230b88eee6055b940da406f7c201 *man/AAPAM70.Rd
fa28c147a188bcf7df043bb6c77d5821 *man/AARDF.Rd
881f8d17683f8ca6ec63f7a1148da138 *man/AARandic.Rd
d2cfb979fa4a66b79f3eb3ef5467766f *man/AATopo.Rd
fcb7fd3e72524ca1d541819bc103a0ba *man/AATopoChg.Rd
343385c6c76398b81ffd03edf288c003 *man/AAWHIM.Rd
9259f21a0740e1b30f1a906cc0558ae4 *man/AAWalk.Rd
edb848b5e70d1761cc837312a6d5cab0 *man/AAindex.Rd
ba86d78581cdd0fb25e68228ce5cc5aa *man/OptAA3d.Rd
52832b9c2bd94b3cce9585fc07db969a *man/acc.Rd
1d857dae42607ff638b89cd17ff944dc *man/extractAAC.Rd
92d64a12a3915c893d893a3ec97b47a0 *man/extractAPAAC.Rd
13cd7ab4b2a2b2b68debb943cca965b8 *man/extractBLOSUM.Rd
48d082d6ce5c5d8352067d64783a31fe *man/extractCTDC.Rd
44734b23e1cef23401fbcd6cb28cfb0e *man/extractCTDD.Rd
3360f3d4ade8aac1a05c01e623558eaf *man/extractCTDT.Rd
80acbeccf8973f544c154e1c8d9d1996 *man/extractCTriad.Rd
e7a76245bb4d631d397d8b52c2ee5726 *man/extractDC.Rd
fd23e7f223497a5854ba50dbf2d42c1e *man/extractDescScales.Rd
23ccc844433d93425e059a81adf88ff9 *man/extractFAScales.Rd
75bfdc635a38ee77d42362f2ed1c4934 *man/extractGeary.Rd
9e2caab460bcf73edf946ab53054e4d7 *man/extractMDSScales.Rd
e88153e334f4b383a4cb876a3116776a *man/extractMoran.Rd
c835be18fb3f8c971b2f33257c51f497 *man/extractMoreauBroto.Rd
25ad3f21e679bf033ff92bb3fbc8b757 *man/extractPAAC.Rd
f877efc848c7ecfeef695016ee8bc694 *man/extractPSSM.Rd
2d985247fcdf28177790dfb67bce7154 *man/extractPSSMAcc.Rd
a72efa18252e3586a813347f456df460 *man/extractPSSMFeature.Rd
00fa271c3e702542167869707f40c7f5 *man/extractPropScales.Rd
5a326e60a4d94c48dba4ae8389c101de *man/extractQSO.Rd
15ea55c0c4716f740bd4e3a554b3492d *man/extractSOCN.Rd
55f444581513e9201e0ebac99208300d *man/extractScales.Rd
ec6598a01e97dbfd8cefbf25a1900247 *man/extractTC.Rd
478ea774c94e31ee28ba4032d19ee58f *man/getUniProt.Rd
996813a1343c60028a28c20933b5d2b2 *man/parGOSim.Rd
ec2f8fc5cca47f3a3894f9944a76ad34 *man/parSeqSim.Rd
ceb8f4dda7ae10c9faac5fa1039dcaa2 *man/protcheck.Rd
1ab52d6406bd5b71079e5e81ac2afd1a *man/protr-package.Rd
0262107374cb35f90da83a729a2284c3 *man/protseg.Rd
b59055696e49a032a6eb3aadbe3568da *man/readFASTA.Rd
bab852d348d98c3c896d7b4c0eb8aa70 *man/readPDB.Rd
45659745855fb062c8fb6ad57f3cd36b *man/twoGOSim.Rd
43dc0f5f31a9c73fff5f6865822aec40 *man/twoSeqSim.Rd
a8b92f7ece00a96c4b1c3ed99997a6b7 *vignettes/fig/AAindex.pdf
9cd0f701809c1de6eb369ece652cbb95 *vignettes/fig/APAAC.pdf
24117eed39299675686d5533b15e4cf6 *vignettes/fig/CTD.pdf
eacbe38823569968d7e4413412fc9cab *vignettes/fig/PAAC.png
1aa13d2372e2581dbd9164c13e5898f2 *vignettes/fig/QSO.png
87067dceab1764429e1f5ca7f83fb6f2 *vignettes/fig/ctriad.pdf
909d7c3ef95eca552daadc4116caf3de *vignettes/fig/logo-panel-text.pdf
bfefbe1e89dc7e4966676ef0c30f8e1c *vignettes/fig/protrweb.png
2e53c3a9280f6c3fe9db261ffb8ab18c *vignettes/fig/roc.pdf
e69dbe99c69cb6dfdcb9f4b61f13b97d *vignettes/protr.Rnw
a89ca75d7562fbe92503df3ced38690c *vignettes/protr.bib
