
"To do" list for MQM part of R/qtl
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This file is intended to contain a list of many of the additions and
revisions that are planned for the MQM part of the R/qtl package.  

If you any additions or revisions to suggest, please send an email to
the R/qtl mailing list.
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SHORT TERM:

o Tutorial and man pages
  - fix the bibliography (pjotr)
o CODE
  - Speed up the creation of circleplots when using 10k+ traits (Danny)
  - Fix the solaris compiler
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MEDIUM-SHORT TERM:

o MQM paper
- Plot Cis/Trans on geneexpression set from Arabidopsis
- Circleplot on the same dataset

o Augmentation rewrite to use best N augmentations

o Placement of cofactors for automatic backward selection (perhaps use windowsize)

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MEDIUM TERM:

o 'Environmental' cofactors (Sex,Block,Age, etc)

o Generalized Lineair Models - use R version

o Handling of the X-chromosome

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LONG TERM:

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