d41fbf9f9b3b000c129ce70dfba5f46d *DESCRIPTION
fcc97450773d2f23dab5a1ba631d30c3 *NAMESPACE
8e0bb478ef19c5dadd913a9678768cf5 *NEWS.md
9abf947d1897a206126b366aa6de01e3 *R/CCcolors-data.R
8fc2e2c05447f7d11237d0fdb75c4761 *R/RcppExports.R
fc665fa6ecfe6bf80c6b3120ddaadd22 *R/add_threshold.R
e68d21608bb47b80d558e9d3e7053810 *R/align_scan1_map.R
56a3d59e1b076bbbdbf4aff0cef1187b *R/arg_util.R
3b575ad3b4e4bd18d13c474429adffd7 *R/assign_allele_codes.R
184682a405425cc4e4879513a0fdf95c *R/batch_cols.R
6a6fc7db8f9d875a0112be96dfec8f21 *R/batch_vec.R
83b72de28808dba783fc9cff74351f88 *R/bayes_int.R
6d92d6ae7cbba643124d0063d388dbea *R/calc_entropy.R
e12dc4f941b4a90a11443c5e5fc6ff3b *R/calc_errorlod.R
d235782320cd0694704f2474d22d2ab5 *R/calc_geno_freq.R
014081873b8714c8fbab1fae2bab085c *R/calc_genoprob.R
86f079a9273b462709f8fac8b25da4ca *R/calc_genoprob2.R
bab60f2f8835bbc2447aa913e9688fe7 *R/calc_grid.R
b18883e0dd275992a3d24fd6acac47e3 *R/calc_het.R
7b97431d0e72ee380061bb75256ce3d5 *R/calc_kinship.R
c6b5b788c9e7db10eead7f2f64dfa363 *R/calc_raw_summaries.R
38b289f3edc651dd308a03a40377f5a0 *R/calc_sdp.R
648754d934cfc49bdabe424711ef1bd0 *R/cbind_calc_genoprob.R
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98555e234a77cf1755b6e73c3f016cd2 *R/cbind_scan1.R
0c504d0bad6022f9b0de422f2fdf7155 *R/cbind_sim_geno.R
906d9fa60218cb0c19de53579c971c4d *R/cbind_viterbi.R
102db631df6320b1c0ec2a6ecdc675ff *R/check_cross2.R
7d0bed9c7399d9a90fc12b34b64aab59 *R/chisq_colpairs.R
7a1b44e2b154dfa7b87e75c2d278fa25 *R/chr_lengths.R
c25dd04ccb82ccc00f0452f6515edf9f *R/clean.R
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c6c3c31452afac51ea02e40e2b6e062d *R/clean_scan1.R
c1615a0b2f0fc28e653cae7bb8c9ae81 *R/cluster_util.R
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3039a74d5b9a004f2dd7df893a6f8486 *R/convert2cross2.R
9d2c6ff616fc1e75cf14e4065bf246b5 *R/count_xo.R
fd1ec752a6a4d6beba6ad4b7a9780ed0 *R/covariates.R
9c55d1b6bf2d004dc9479e5fae8b4449 *R/create_gene_query_func.R
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6a68dcdd53d91041baa30378038f59d2 *R/create_snpinfo.R
56ae6354d5499c19aed3316224ec032a *R/create_variant_query_func.R
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c5dcd686befd353fe9bc768e8bf3b13e *R/dim_calc_genoprob.R
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67e898ed057c2337c72ad5d2d31412a4 *R/find_ibd_segments.R
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81659a66956281b093fd593270bf71b2 *R/find_map_gaps.R
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5154c9e13f98d781cd9e52214abd7dd6 *R/find_peaks.R
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26993ba62489e474bed98a93bfeca2c3 *R/find_peaks_and_lodint.R
1044eeb947e3f161838c607e42c446d1 *R/fit1.R
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7c2e378455d9f0a547c454921bffb194 *R/genoprob_to_snpprob.R
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1d878dd48ffe06098031c75593662cba *R/plot_genoprobcomp.R
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7d8c98d8e92c1cd373579e41d09b7b5d *R/plot_snpasso.R
6be679df66b57c9cc9791192d762a808 *R/plot_snpasso_and_genes.R
9b4f65b7bb5608b6f21caea5af5da6fc *R/plot_snpasso_and_sdp.R
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840c6989200853710ce6858adea16391 *R/predict_snpgeno.R
9ae935f8c012f35e7d993f1064b34b6e *R/probs_to_grid.R
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69962837dcff37fe2820973101d58c0e *R/qtl2-package.R
35dfd77e84be7fc08db270eca67a2317 *R/qtl2version.R
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9ca567252fe25157dba9db2460a55ef9 *R/read_pheno.R
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1df52dfe4b3424abb8afb223cd98f370 *R/scan1.R
bf129552b20527d271786c2d5d47ef97 *R/scan1_binary.R
e5054c4985ec1964b437ca84cad7d122 *R/scan1_pg.R
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4bca03b0eaac0350c05a64d8dbcd93f9 *R/scan1perm.R
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1e8a36ce07857b184b66c6320da67aa1 *R/snpprob_from_cross.R
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791a49f22998730dcd05951a1225ecbc *R/zip_datafiles.R
67b0d7c36d18d62eb16e28746478e245 *README.md
f61db891eb928123aba4412ca322f508 *build/partial.rdb
72a55b2282e6b6c236b4c179612a03e2 *data/CCaltcolors.RData
870865217ad6147fb37d6a0b8a6fd3ec *data/CCcolors.RData
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469bc104de5c39f87962a67b53801fed *inst/CITATION
6ec418a4bceddbaed4880e487bb35a51 *inst/extdata/ReadMe.md
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4b1fb372f6e3c0483e2be4ad67e0cf40 *inst/scripts/ReadMe.md
2ceae5a8d36d5072b3426faf698f0c2f *inst/scripts/create_ccvariants.R
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