dea929681e1ab46cc4cb366ec174a8cd *DESCRIPTION
f1e951d83a40d8137bebf79245ce7c2e *NAMESPACE
722617c60945101fad129268f4c27576 *NEWS.md
18aed50eaf4e2f9f8a85fca475b12aeb *R/IOTCmove.R
443296756474afa35f7a769b86f71bf0 *R/NegLogInt_Fn.R
41514abb183895db8b993bb5592aa649 *R/PinerPlot.R
dbd3cd10cbbf29dfc57d4e40060b1954 *R/RebuildPlot.R
75a1b9fd878073ee588083b14aa1732f *R/SSFishGraph.R
07a61c825650330873252b0d1d924ff1 *R/SSMethod.Cond.TA1.8.R
0fde875c4a166dc1ff9d0ee990ed05a0 *R/SSMethod.TA1.8.R
d5a9f12126493b47d35d01f7c8ac05a3 *R/SS_ForeCatch.R
a5f1bed359d94b88ae888579ac0dd462 *R/SS_RunJitter.R
053f1f96f9daee37c43f8ef9d74fccd5 *R/SS_changepars.R
1b5a6f4ecac41fdce22659e6114fac9c *R/SS_decision_table_stuff.R
d63bd44e36ace9bd74bc7bf1ae70a457 *R/SS_doRetro.R
1316e434c11a1872144ff931b90ee6a4 *R/SS_fitbiasramp.R
6a217b1cc4b90e8bdf08f20984c6caca *R/SS_html.R
c6b40139c77499efe33140e88fbf36db *R/SS_makedatlist.R
bde8bf8941739ff2ec3a654313008a97 *R/SS_output.R
b389a24635b66be298e4631d7391c27b *R/SS_parlines.R
63343473e0e2b955332e09a0b9c04d7d *R/SS_plots.R
18f990244d83fda72ec8ea64866d9f8e *R/SS_profile.R
2326747e8aab0a3408030f178f69b57f *R/SS_readctl.R
badbc4d0589526fded2d4daa8dbe76a8 *R/SS_readdat.R
8169ee2e529ce71b79adaa9c5fa20c7f *R/SS_readforecast.R
b3318c49b1cda00ce66c2f289c80082c *R/SS_readstarter.R
ef98d499ffaea4b0998d47586102d786 *R/SS_recdevs.R
86c1b99bd48f5d5dee0eead63f68268c *R/SS_splitdat.R
2b5511a444deb4d912cae9f6c37399fb *R/SS_varadjust.R
f4a6cdd10d9e296736b7556995f8b8f0 *R/SS_write_length.fit.R
62e4295a16f55a16b5108be8399e73af *R/SS_writectl.R
61d61aa1d0246ce2b5d40d4f7a883cae *R/SS_writedat.R
7bd9a1d8a621535ba84521fc5df57336 *R/SS_writeforecast.R
f1d4b035d1d5a67291ca24fe4b1301a0 *R/SS_writestarter.R
24d7a4c0b6a2b02f949eba98cdb05b62 *R/SSbootstrap.R
a39e3ca296e26bd9fcb956bf21e8e5de *R/SSchangeYears.R
9e93fefb02bc47f98dbf89174404e4d9 *R/SSgetMCMC.R
e0d70510fc61994cdc2820de21be38fd *R/SSgetoutput.R
d0662a05e161670b15c02d4a262e7b68 *R/SSmakeMmatrix.R
b0405a67f4189c5aa88cc2428e5b742e *R/SSplotBiology.R
af76dcfd012d0ecf030c6f5a45e9d7cc *R/SSplotCatch.R
a26df544dab89181c6de52d2d6434b6c *R/SSplotCohorts.R
8a738aa8148a7510fe0e945646e1b9ae *R/SSplotComparisons.R
12ffbc50067daa573da7c08d50a9e7c4 *R/SSplotComps.R
b0cb2ba68fe157da11cbd1c136f40189 *R/SSplotData.R
540ee4ddee7fb157488b91e37a9b9f49 *R/SSplotDiscard.R
65006e9ba468fa91ecc2a41ce04deb28 *R/SSplotIndices.R
937ebb399e44b081b7a88586c2d8ef7a *R/SSplotMCMC_ExtraSelex.R
56467c505e1dc891952e6a262657dd37 *R/SSplotMnwt.R
7d4c5b22e249aab9c0b82f66ca9cbabd *R/SSplotMovementMap.R
8ccbbb1c0839201f68503095489324e4 *R/SSplotMovementRates.R
ca17fbe12289a8aa1c6cc58631a78f38 *R/SSplotNumbers.R
0739c207057f6f9d7b86c492d46b7f83 *R/SSplotPars.R
7d1cc72b8362be99e61ac7f55469c0ca *R/SSplotProfile.R
5979df475161a1c137803670ce1aeaa1 *R/SSplotRecdevs.R
158ccc6c7847e76e833969d1bb79073b *R/SSplotRecdist.R
167cd535ab266aa3f039a4b7e9af78b9 *R/SSplotRetroDevs.R
fad8aa9425f067a1c127b06d860cf880 *R/SSplotRetroRecruits.R
5c2b7536aed9c92217bf228027ca1b87 *R/SSplotSPR.R
d991c6c2201f28aa68e12194d3b3b07b *R/SSplotSelex.R
e2d25855d32b518ed06e73ec33e7da0d *R/SSplotSpawnrecruit.R
2e6aa3c26b2a5562f350ebeb3e5c8935 *R/SSplotSummaryF.R
489d1fe82bed1a4818a799b4cfc5ce31 *R/SSplotTags.R
f036ef73061d2dc68d9251e3081061d2 *R/SSplotTimeseries.R
9adea4f851ef1582c70f4aa7a72d2555 *R/SSplotYield.R
6d58b8f7b65013f7a6ffad2126dcef99 *R/SSsummarize.R
025da3911111c605a805acf975b32310 *R/SStableComparisons.R
b3cdf866d920f538750c675c936fe6e1 *R/TSCplot.R
a89cce16a851ccc3231275df9c4b53b8 *R/addSSsummarize.R
26964bf2b60e79036fc3888efe72b579 *R/bubble3.R
f35b2f5135494a4b35c6a6c1ca42cd9b *R/getADMBHessian.R
a2f019a5c418fe33fad97688aebd103a *R/make_multifig.R
9e97b0267baa0eef290232236b79eebf *R/mcmc.nuisance.R
753d019a1e5b25606d32e6895b8a469e *R/mcmc.out.R
eda6abdc97fc4b232ae8f4eaf14eb168 *R/mountains.R
c44ccfba14d56469ffb7f63b6635722c *R/movepars.R
7e61909543fd85085f8f973373185e75 *R/plotCI.R
dbc1af99ba83f67a60c03d094058f877 *R/r4ss-package.R
d3f591c5a88271c1315aee32e6303af0 *R/r4ss_logo.R
391751c2efb3a6f92786e19357a32387 *R/read.admbFit.R
881b3f476aa3a1cf1e49161ae0905330 *R/rich.colors.short.R
3fe71753ef5df8aa0e2fee85696cee89 *R/sel.line.R
b3949c05b6fd6a6029eadfc7d5a3c2a3 *R/selfit.R
82be267698212c770f60fff73b32f6c6 *R/selfit_spline.R
3edb8aaf0ca082d234ad87e3ad806376 *R/stackpoly.R
e0d13cdf968631fe8ca6f49637b74df2 *R/update_r4ss_files.R
a429f6e9444e76a9008113ebfde410b3 *README.md
e0bbd6f1b5c3ebc8251a45f9292e49c2 *man/DoProjectPlots.Rd
ec674643e1f9c884b33a5749964e86d8 *man/IOTCmove.Rd
d69084349b718dc08b9f3cffb01748e8 *man/NegLogInt_Fn.Rd
abe32f588af3983e5f7ed4f4a4094b0e *man/PinerPlot.Rd
7b8fcff0317d2e957006fc2766d512ef *man/SSFishGraph.Rd
cd8d1abdd1c0b7586e4da93509c3209a *man/SSMethod.Cond.TA1.8.Rd
55a47dcb1830ca8d22ffd30225bedf50 *man/SSMethod.TA1.8.Rd
a18ebf6cfd4522587d7c710f844e8d27 *man/SS_ForeCatch.Rd
fa83f64bbc1f17ec1c4f46d52630e4be *man/SS_RunJitter.Rd
5599f7dc2bd1040ff9ee72f3b9d321d8 *man/SS_changepars.Rd
a74d3e43a94aa755a7c4e99919e6a7c3 *man/SS_doRetro.Rd
0d3ece2fc97acc9a1cf97d342191e4b2 *man/SS_fitbiasramp.Rd
be6e9eb821307b57170b4e182187deae *man/SS_html.Rd
d53b1e38a7d67fe3e3c7853e6c09c406 *man/SS_makedatlist.Rd
6ef911672a7358bb6f5a953ac9ff1023 *man/SS_output.Rd
0eeedf49a3ca744cfc1b2ecddb03ca44 *man/SS_parlines.Rd
5889ebcb3cf77240f3878bcd036953a8 *man/SS_plots.Rd
68e21d7fd932d9d547cea442ad742163 *man/SS_profile.Rd
f285c6716d7d0e9c093e5a100a698547 *man/SS_readctl.Rd
ceb3493030c871bb0dffc6d66e5799bc *man/SS_readdat.Rd
01dac10784a5000dff8559bcf56e3c04 *man/SS_readforecast.Rd
bf6bdabf4e30d0771ced825774c1c9e6 *man/SS_readstarter.Rd
8299286fce1437179b793ad87357f3a2 *man/SS_recdevs.Rd
c43fa656d7928442f534923a8ebdfd52 *man/SS_splitdat.Rd
507560cc1214fbd872e2e239a77cfc54 *man/SS_varadjust.Rd
7bb7bac3ba712cf002e43692a5426a84 *man/SS_write_length.fit.Rd
b80d67dfc36f7ce3b7c0e23369bdc824 *man/SS_writectl.Rd
75ad27e3c7fd4e621d78f3918cadf21c *man/SS_writedat.Rd
8a3b113594582d8fea768406dc4ea707 *man/SS_writeforecast.Rd
0d36ef070da8b2ae67404cf4b3e09484 *man/SS_writestarter.Rd
51d1d0e158ee38e7dde12c3bb2fae9e6 *man/SSbootstrap.Rd
8155f94dd8b85cfb379a3e0e424210fd *man/SSgetMCMC.Rd
30d3201c944f201a0e54655f0696e7ad *man/SSgetoutput.Rd
40b43cd789b9042b406801e245d3f154 *man/SSmakeMmatrix.Rd
203865a902d4671819ff2ced6b65182e *man/SSplotBiology.Rd
22d635ad52968f87a91476b7ee5420ae *man/SSplotCatch.Rd
4d6546d04418ceb7ab72a15c5b5624fe *man/SSplotCohorts.Rd
ead5972536039cd5ce3e85f1339aefb7 *man/SSplotComparisons.Rd
39cb1d3a5c6919f671592f25a93d2cbe *man/SSplotComps.Rd
70ea1476b2a3041b023208553444e332 *man/SSplotData.Rd
a5185417f9c79de09969886c7bc672e8 *man/SSplotDiscard.Rd
b3bd71f9b4e2c9d4b3b13e0684d9de41 *man/SSplotIndices.Rd
1579de3bedd9334288dd5aaff0afdbe8 *man/SSplotMCMC_ExtraSelex.Rd
649d587d2a4939ef843f22147f9c73c4 *man/SSplotMnwt.Rd
0a10fa26d9f49b17bb010515bf7f37f5 *man/SSplotMovementMap.Rd
00c9ba37f7a0739da3c33c68af9fb9d4 *man/SSplotMovementRates.Rd
ceacd3a3ace9b7e5a76ac3f06235d7cf *man/SSplotNumbers.Rd
43d264d8f7df02c00fc4023860801209 *man/SSplotPars.Rd
9f7211c60622fd7838be1bd8a9535244 *man/SSplotProfile.Rd
ad2891bfdfd4dd351947e65cc72dc2ef *man/SSplotRecdevs.Rd
30788b26bd72a2ae2b2d8ee2cdc5bf67 *man/SSplotRecdist.Rd
b464964e5444bed05f749928b76b50f5 *man/SSplotRetroRecruits.Rd
a9d71f4c0d72a0722e63616db4e183ce *man/SSplotSPR.Rd
9ffa3f4b6ab9bc48f0bdd8b97d239e94 *man/SSplotSelex.Rd
6946c39522eae2f9020a4548f8cef235 *man/SSplotSpawnrecruit.Rd
63f42773e265a581db5f60d4fce6d264 *man/SSplotSummaryF.Rd
2300d6dcc1c1934648dcf12a3f0af094 *man/SSplotTags.Rd
671a1fd4d1856d595c7a92162f52ced8 *man/SSplotTimeseries.Rd
2294d22bb1a81eeb3be797db631af6e1 *man/SSplotYield.Rd
a24cd93dd4bce7c886876467b34e040e *man/SSsummarize.Rd
665b4ae9c33a9afe9185c401c071489f *man/SStableComparisons.Rd
4014f096e1ee82a54bec42789065b59b *man/TSCplot.Rd
446ba123f84fea293f8b2d907f29bb34 *man/addSSsummarize.Rd
7456d9c5013ef8098f5957a034026124 *man/bubble3.Rd
c05b7e15a3c7f813ab03c13b5dcedf99 *man/getADMBHessian.Rd
654da1f9cac17d7aea92812ec27f5e6e *man/make_multifig.Rd
7e91f685091e597f85075b145415c627 *man/mcmc.nuisance.Rd
74fe74df28799c00ec869840b40c5817 *man/mcmc.out.Rd
53aa48b86ea3b9c2606b552efd79d8f2 *man/mountains.Rd
48aa6f64add7491709a47c4eac828700 *man/movepars.Rd
c379ad07ba1dff498da32a8b320fedd0 *man/plotCI.Rd
1a3dbffc5fd5c3bb468a66db1559d24b *man/r4ss-package.Rd
66fd8bdfa980176e1de327e98994f20a *man/r4ss_logo.Rd
9f62e6e59371e9efb62acf3ff0c5c23a *man/read.admbFit.Rd
1de9df81cb8985abe42c2e590f8f1b0f *man/rich.colors.short.Rd
db4f3b59660b52536be4839b60367c37 *man/sel.line.Rd
f15a5bcf88fb8abcebea5a10c47d197f *man/selfit.Rd
f9eb4180498bb15d7d1df812e79787aa *man/selfit_spline.Rd
61c392d0c4a7706e9f78142fb9aebf91 *man/stackpoly.Rd
b98bb7bd26bcbc8e68514fcdb4a98475 *man/update_r4ss_files.Rd
