89e66dbb478a6399e16feeaf18cfe17f *DESCRIPTION
c687c26f7ae34d45e8d7279505058b23 *NAMESPACE
96214a8f4ae130dc7f9ceaaad4e1a7df *NEWS.md
31c989680818c8c203b587d605aa3ab7 *R/RcppExports.R
9816cabbc2daa11f7088a30679bcf189 *R/helper.R
b235b8f6a7de13b03da9432d3738135b *R/params.R
a39b23b9048e68fa39dd24008e517a09 *R/parseSimulationOutput.R
741bea50e93c970fa96c728e9febbaa9 *R/retrocombinator.R
2e4a8ffde23a42654fd876fbe791799d *R/simulateEvolution.R
dcf681e34d46724d1a1c75f8ea2e9679 *R/visualise.R
a5d09391be018f280f85b991e9ee30be *README.md
5800021b386ea581f8f19200a77ed987 *build/vignette.rds
e1485ad8e25e64d4c560205241ba263f *inst/doc/simulations.R
8d58f38dabc0b4235601460e93b2ab36 *inst/doc/simulations.Rmd
01842fc062f3ac9dd8ab6dcd84396e40 *inst/doc/simulations.pdf
914423398b5f0fb242e2d6f280b33415 *inst/testdata/test_parser_expected.rds
dffe9bdee35dd5463d54ec87ec2bd90f *inst/testdata/test_simulation.test
2e4d9f3801c22329fed192971f9e8d8b *man/ActivityParams.Rd
6231c7e2fd2475b06e2fd637369263fd *man/BurstParams.Rd
fbefb47b03d67736c30018bbda26a870 *man/FamilyParams.Rd
dbef026e0261d63179858630cd4b23a9 *man/MutationParams.Rd
56791ddc9f3021f7fc442309edba2167 *man/OutputParams.Rd
f6d50f6db1f84b55e7dc9e8f069def0a *man/RecombParams.Rd
47a59d178be4a4be54e3b72d2a6a21d5 *man/SeedParams.Rd
71a3e1db41f874c885c5774fc30c3d50 *man/SelectionParams.Rd
a7079d456907f7a12ecfae32bbd1135f *man/SequenceParams.Rd
7aec520d87cc8ce2fad277e6deb37627 *man/SimulationParams.Rd
bb7bc983da9d8c70f4af9c47a9df451e *man/is.ActivityParams.Rd
57601460a2569150cb0617fb1031a698 *man/is.BurstParams.Rd
41490b162212246c91a91e45cce2621e *man/is.FamilyParams.Rd
e35d250ed27b1209cb3e242f0f6aebf7 *man/is.MutationParams.Rd
f62dbaa932c5c1559f7e8be39c84d36e *man/is.OutputParams.Rd
9a75b31585fe8279e187dc5b9263c34b *man/is.RecombParams.Rd
982e6b57872cee34e1d77efa80f2763d *man/is.SeedParams.Rd
4bd6cc7c55bc96bfd859f2609e51bf79 *man/is.SelectionParams.Rd
e83de1b9cfb4fe8121bc820bb3df2f29 *man/is.SequenceParams.Rd
1271f95c72af3fc57c63639c2b09952b *man/is.SimulationParams.Rd
6b3cfca81f6ffdc78e08303ccfebe487 *man/parseSimulationOutput.Rd
a9608afea308f632e6b73c9c9a309d76 *man/plotEvolution.Rd
2be9a006a179db7da1c477f19b5801ad *man/retrocombinator-package.Rd
b837e0681b5efd183f410f78af484eab *man/simulateEvolution.Rd
b50248a5ad7e1396478f9c959b245142 *src/RcppExports.cpp
b3c29fa73e2e1753780f8a7a17946fc9 *src/activity_tracker.cpp
47121cffd2eb291b02c500fdeb6502a1 *src/activity_tracker.h
56251cf9934651c5237f19d3faf86687 *src/burster.cpp
b5db7ab01661e98e14b73c82f44ad40e *src/burster.h
edef5673b3093f73128d36fdabaff291 *src/constants.h
be61896cdfde936b62d0acbca1c1efef *src/cpp/main.cpp
565a54d98cad014280ec35e93aecbd90 *src/exception.h
4e3be58bd6c95678e9090f4c6b4cf23d *src/families.cpp
f8cccce04f94c266990731d18392746e *src/families.h
734599d60e5fc06aaf58acfa90da0abd *src/mutator.cpp
179d79f943cb2b504a858b1f097ebd57 *src/mutator.h
51aab878dff98c1ec3534223da286142 *src/output.cpp
826e1cea6c5b28e3069e31eb57392053 *src/output.h
10f944890645fa8bbdf6b8cb6e3fae89 *src/point_mutation_models.cpp
2eda5c7d12be2cef8f7955cc31999c5f *src/point_mutation_models.h
4ef99b30ff7360abd8fd31180fa74d46 *src/pool.cpp
9c17a6b0ca4ea468c88490dbdb7360f5 *src/pool.h
d8f673bcd675efa3686f74f5454bc44f *src/rand_maths.cpp
cb4de9ac1c63493e02c69f76710e57c7 *src/rand_maths.h
e3dd85fa8f5c0604d22941439a8d7e60 *src/rcpp_simulation.cpp
f472ed98557c464e1aea47c76d203f39 *src/representative.cpp
3073c59a86aed127573af3504b06ec36 *src/representative.h
ca54b9ec039becc88715f611698e6eab *src/sequence.cpp
3dfa48a0105dbb2ccae3746f99274d8f *src/sequence.h
6c3a38dabbb6803f84c740254a548e0c *src/simulation.cpp
a7cd4beea495689ce14bafdb6565285f *src/simulation.h
e3455650c47b75bf438b2d8511c946fa *src/test/test.cpp
98349adac099427157b29fde498b31e1 *src/test/test_activity_tracker.h
6d02f033c74574c3679f431cd9ccb40c *src/test/test_header.h
9138eec96230a3ea4aae4b058402b2a2 *src/test/test_mutator.h
d3a3f52f06de10f078094b93aef01708 *src/test/test_point_mutation_models.h
76f30b16c778fe91369a08ff65cafe42 *src/test/test_pool.h
5e55d69e9b4ea9525b0d0f506c7ccfc3 *src/test/test_rand_maths.h
cdb15593539db5b7c9d30e370b1d2f4c *src/test/test_sequence.h
dffe9bdee35dd5463d54ec87ec2bd90f *src/test/test_simulation.expected
0b640a588b4e0699c0b8dfc2c1304297 *src/test/test_simulation.h
2e266d6fe7cc22cbfb41dfc610c1796e *src/test/test_utilities.h
47c7aa4703af5a48e8410056981bc271 *src/utilities.cpp
b952b4f92bbd9ced93d42bd681d9dea8 *src/utilities.h
2e8355a4b3b5242aef585945a4a6795d *tests/testthat.R
4c40f702338c8401e8a7759cb77ed1cb *tests/testthat/test_parser.R
8d58f38dabc0b4235601460e93b2ab36 *vignettes/simulations.Rmd
