a1541f3abf97b85aa3c23cab1727b93c *DESCRIPTION
d5392f991d9681f82874327cb889fc2d *NAMESPACE
933c1ea3b5af8d97523b63f68d24f767 *NEWS.md
f2671ac56b0d9b25cfa2f7bc3268d789 *R/RcppExports.R
71d1f6ac528e16f1dc1ce9cd8b027584 *R/assess_pb_bias_correction.R
8ead2cc3140253aa58172ab07add7345 *R/assess_reference_loo.R
324df15f4e2b16fa34563fdde1b9a0db *R/assess_reference_mc.R
3485cd94bc3a50087265c21862d6ecc8 *R/check_known_collections.R
e0bde2f5c25b2c3f5cbcdbcdeb627703 *R/close_matching_samples.R
2846a10f419389884223f094f29f643e *R/count_missing_data.R
590a5fc8c47b3d830d1b3e3557136c28 *R/custom_pi_prior.R
6a9f4739ea907738bb96217f402cc912 *R/data.R
4b2f0728c74ee04b2c318206d9baf821 *R/data_conversion.R
e1cd3f3721157e77cab65024b3d56812 *R/eca-internal-funcs.R
182fb3b6c7da99775de6222e954948c9 *R/import.R
2fd62c6735f25b99e8180bb2445031f5 *R/infer_mixture.R
96a8e379bbb329154163f590841aa9f9 *R/modify-scaled-likelihoods-for-known-mixture-fish.R
9e6835cdc3a690c18489a2804eba346d *R/per_locus_means_and_vars.R
477e3e8366215a5691bbacce7aa660ac *R/read_gsi_sim.R
ef50aaf192351c122d2af42c6fd3d637 *R/rubias.R
31366e30317ebebec6f0503b482eb1f7 *R/self_assign.R
88c2f50572b6db5837bbf711cec53e5c *R/simulate_random_samples.R
f3b3ddc731cc74f78c4ebdb2ab1b581c *R/simulation_pipelines.R
01dad8f00464ad1ce57bc6d97e3e52fa *R/utilities.R
1f039e85ff7fba66afe56617bf77b1af *R/write_gsi_sim_mixture.R
6598838386bda53d04c81ea1a983fbf6 *R/write_gsi_sim_reference.R
28f67be211686100639162a0131b35f8 *README.md
cc6fa475aa8ece81238cb86e0af898ab *build/vignette.rds
8bf47416ffb662f74dbb6b92e3b7261b *data/alewife.rda
17f275aad1bcc27a1eaeb301eb7ab3be *data/blueback.rda
8cb9f27f5274e0ccf6efd09774dd05ea *data/chinook.rda
531973b2eec741194330557e69aefcf1 *data/chinook_collection_levels.rda
5ed782407c1675cb93f736fb54783458 *data/chinook_mix.rda
8d31a1baaebf4f4bbb35667683e5513c *data/chinook_repunit_levels.rda
063e86d26bf88d26e0e0c627196dc959 *data/perfect_chinook.rda
00d82177c04d539e2f0dd3ed92a07294 *data/perfect_chinook_mix.rda
e6a74d8bfa290843b8c31c00afc19a06 *data/sim_spec_examples.rda
47a35dba0b838678ccfbce28c97507f7 *data/small_chinook_mix.rda
8a90346280a5692d740f40d037f460f3 *data/small_chinook_ref.rda
21fac20b2b31066c5ac1a4e836b03b31 *inst/CITATION
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60ffa5986cd6d34f727dfae53f089f58 *man/assess_reference_loo.Rd
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8f3fb91ceca067e0487c19cd88d8ab08 *man/avg_coll2correctRU.Rd
4e0c56adfd6a3b02e1e39efa97fd0448 *man/blueback.Rd
8a1eecec5ece4c91fc47dcd937d826a4 *man/bootstrap_rho.Rd
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390a9bf897181733886027aee60b4d9e *man/chinook.Rd
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8b1dd983e95f0027e8c562728d3895a2 *man/chinook_mix.Rd
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7fd19fb66814ecc51f07e72debafcfad *man/close_matching_samples.Rd
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a613c4375678a37c4951d47053ca2552 *man/gprob_sim_ind.Rd
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6a14bfa670a9101116e2632fb69d7979 *man/gsi_mcmc_1.Rd
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ad7e82a64c33c0f935439930f4b25007 *man/infer_mixture.Rd
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54e97047d761501d320e85a490de5b24 *man/mixture_draw.Rd
0b75a526ec0c11f973af4d9cf5a9a6a9 *man/modify_scaled_likelihoods_for_known_mixture_fish.Rd
791bc8f08b5b3825e59f79a5da529342 *man/per_locus_means_and_vars.Rd
26ec603888dbb192fb6bf2eedb8258bb *man/perfect_chinook.Rd
a7a4a9a98c05f7dfeb931801b012d6c1 *man/perfect_chinook_mix.Rd
19226465eded687222500790db8c5b0c *man/pipe.Rd
1eb129a55318cf7e45a2b1c3cda15c5a *man/rcpp_close_matchers.Rd
3064bf4feceb0766a83276f551836032 *man/rcpp_indiv_specific_logl_means_and_vars.Rd
ecadbf573fb365b69161d28c14545f7f *man/rcpp_per_locus_logls.Rd
1509f25c1030a468faf9d805a16bbfd0 *man/read_gsi_sim.Rd
38df70dbfa1053f406cc714b4a54a53c *man/ref_and_mix_pipeline.Rd
be9d4d18a88dfbf5464961daf5db211d *man/reference_allele_counts.Rd
436b8f2e7f4c8c344d2b1fd1efe29438 *man/round2.Rd
e36ac00bf2a5d16ee60c415d0445a2a1 *man/rubias.Rd
3356b49447940691c5cd32b199c6f05a *man/samp_from_mat.Rd
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287d5484d202e4fe1a7320c9ac219e0f *man/sim_spec_examples.Rd
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6f62b985e7ce91f87bbfbf9991be1dc9 *man/write_gsi_sim_reference.Rd
8465ee3c046dc4b929d81033152f5339 *src/Makevars
1344f2b0991ab305a1a99893493c907d *src/Makevars.win
03575c2e1de1e8c213000984d1242d65 *src/RcppExports.cpp
2f3a07d113cff0d1f78da1502e8affbb *src/macros.h
a65364cb48549c37286c184993b343d4 *src/rcpp_close_matchers.cpp
5a60de4956446b58d873cc7f59a8f2a5 *src/rcpp_fullBayes_mcmc.cpp
0333c53a68bf56b5e7f560f982262ba1 *src/rcpp_gprobs.cpp
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4e677597cb0742252c59dfb9eaaf3f6f *src/rcpp_per_locus_logls.cpp
3f2d770964642df49dae36685a3230b0 *src/rcpp_sampling.cpp
1c4731f335bbb16f0a31b2f95afc5f41 *src/rcpp_sampling.h
7872849b94f0eab40c3725d59fa388c8 *src/rcpp_simulation.cpp
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0ec4407616f6e0c6946f188b77f1dd0a *src/utilities.cpp
a28c640559a13bd8b8e71fd0bddf7d1a *src/utilities.h
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dc215cd397c60d2ac249365153168c1e *vignettes/rubias-fully-bayesian.Rmd
a99f4fa3825df5f5bd0a7f4a3b4f3ac1 *vignettes/rubias-overview.Rmd
ca1497513cf39bd338d263422e198130 *vignettes/rubias-underlying-data-structures.Rmd
