1e69b49ea7aeeda6bea86d3359b9d1a2 *DESCRIPTION
968f873af76462be20505beaa88b313b *NAMESPACE
6d737a4c6b753164f53ab43876d8f363 *R/analyze.rwty.R
bf3518422250e03e18ff98727d8adcb4 *R/check.chains.R
641fdd4a613b03794797290e649b8926 *R/clade.freq.R
b06fe8dc4d5e7144bdabf13f8f0360fa *R/combine.ptables.R
7200e5ec23eb068d8d0426cc7214d64d *R/cumulative.freq.R
e667ef9afcdaa02bc9d0cea0367cce02 *R/estimate.autocorr.m.R
c04176155baeaac6d787bedfff80f54b *R/fungus.R
38e43d924fc31a65057b73081b4203c1 *R/load.multi.R
34444c8fcff8f3e3c59ee1dfb622a2e2 *R/load.trees.R
d6bd6d9c3317f3b50b8d33e66dfa4873 *R/makeplot.acsf.cumulative.R
7226a1ec055030f0dc425547243a9e2f *R/makeplot.acsf.sliding.R
d9759c19ba18ffce3f06b67bde851ff2 *R/makeplot.all.params.R
c5cc468c09f32a7b928f428e1627c8f9 *R/makeplot.asdsf.R
08f7370503c9c5f2ba917fcaf3800968 *R/makeplot.autocorr.R
48f0bc1fc9bcc6cdd48b3de24c1d41d5 *R/makeplot.pairs.R
9a445bc16a1855981ade355fa501aa5a *R/makeplot.param.R
1a04e7c35c3a032cced86f9c81d49f55 *R/makeplot.pseudo.ess.R
a8e8ed02314e9542e71b90b094e7f382 *R/makeplot.splitfreq.matrix.R
8e2963c88b31011aa0e815b5cb608240 *R/makeplot.splitfreqs.cumulative.R
b7cdd8e5d947c1c8f87490767ebf714a *R/makeplot.splitfreqs.sliding.R
f4920ea320b06b191eee9e6b543c8cdb *R/makeplot.topology.R
db3a3321bd7c0e8322ae18585ed6ad40 *R/makeplot.treespace.R
04385ae135cbc2dbbc64b86648a73b0c *R/parse.clades.R
9bab6802f6bd610063b597f08f017386 *R/print.rwty.chain.R
b1589ccd797926edad926ba89bde2a97 *R/salamanders.R
b136b1aff0bb937837c6916d06b7c385 *R/slide.freq.R
e69fc1fc15f58dbec417c076f2185475 *R/topological.approx.ess.R
9da18648133f8b5ec76423a84cc18a7b *R/topological.autocorr.R
c567e238bd18f6aa02dddccc44bf973b *R/topological.pseudo.ess.R
5cab3cd043d20ad6fde14277acfeacda *R/tree.dist.matrix.R
a59ca23ae02249f78877e72feec18db2 *R/treespace.R
f9616b01b414d3192a78e5304f926ec7 *build/vignette.rds
59f1d4b797c34088ef0a0cc9549da4a1 *data/datalist
6c50140f7aef2f04bdd0d93683d90c66 *data/fungus.RData
3d96aceb3b6c941f700eceaacd581d99 *data/salamanders.RData
68b7720b7030f583db077bf16b0d80b9 *inst/CITATION
1f7b4d8c0f74c8e8e3e1f73348d27cc6 *inst/doc/rwty.R
01885acae8c3ed508a8f856bdbf052ae *inst/doc/rwty.Rmd
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53478af693817e8c09eec525e11a4ec9 *man/analyze.rwty.Rd
898f851dd21b4539c346951e116235d8 *man/check.chains.Rd
cf7a007c3774e19fee7a40734707a6b2 *man/clade.freq.Rd
dee50323de18bb12211083f02f5602e8 *man/combine.ptables.Rd
3dc897b087b6e0261e9a93252eccb850 *man/cumulative.freq.Rd
aabb373b304a96501b4d3c7da1993f66 *man/estimate.autocorr.m.Rd
f5b5d69e4e240c98ac5637f450875de4 *man/fungus.Rd
77f49a8a27d9e03f73060032ba044582 *man/load.multi.Rd
70589bdfc1b2a570c152f5505f799017 *man/load.trees.Rd
8bee607c5de24c6a69613fa26ce9f94d *man/makeplot.acsf.cumulative.Rd
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1aac22dda3759702c5d5b7b2b14783c0 *man/makeplot.all.params.Rd
cca83fc8e877b866d5b7a7d27b459154 *man/makeplot.asdsf.Rd
346124c8c8b1434905d1e511d85687b4 *man/makeplot.autocorr.Rd
b23788c657d3784518a87da46b2865fb *man/makeplot.pairs.Rd
c6d760491e5344c1e587c22bc716cef4 *man/makeplot.param.Rd
06e24045dc7968af0afd3c480b0aba18 *man/makeplot.pseudo.ess.Rd
16d1d2a6c3ec523bbcf4bfb4f4a41b91 *man/makeplot.splitfreq.matrix.Rd
13c1be66c8d30bd0b3a9cc3148fb46f3 *man/makeplot.splitfreqs.cumulative.Rd
0a38b66975eadd384b0421d6442ccd42 *man/makeplot.splitfreqs.sliding.Rd
e05688cbc69f5497a6174bad6dcfa864 *man/makeplot.topology.Rd
8b0f7b2c5df91225c74b41b6d02bb85e *man/makeplot.treespace.Rd
0075590c05925c55a2e6f9271aec438c *man/parse.clades.Rd
c2aa2addb005104781c80c2cfa45893a *man/print.rwty.chain.Rd
bcbfc235df83a1f026bd4a6822f4295f *man/salamanders.Rd
331ddb2315ca848cddec0c4a2279af29 *man/slide.freq.Rd
2397b1548b51f84d3f56435e857fa177 *man/topological.approx.ess.Rd
c8959af96e564658eb1ff1640d427e92 *man/topological.autocorr.Rd
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50ffe0f2f4c4f4695934cfe839930e17 *man/tree.dist.matrix.Rd
9d5aa168c73666e3fa541ffb4717ce8b *man/treespace.Rd
575ef1033fb09f2840de079e2cfc0bcc *vignettes/acsf.cumulative.png
9a247bd3749532e1b5767b96b718f681 *vignettes/acsf.sliding.png
80ff9a4a8c26387746f732d4fc0f7bf6 *vignettes/asdsf.plot.png
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477d65e7c6cb99310e7faa20c7c542e4 *vignettes/autocorr.plot.png
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e9afb162b37ffae29cf97782d20b8a13 *vignettes/cumulative.asdsf.png
7b8561b358b25c3a2430a1a62fbad32e *vignettes/cumulative.posterior.png
44cbd18d6c35cb11e21bf818d2c5b4d9 *vignettes/cumulative.single.png
70a32d16bc77832ed8963a077a6dcee0 *vignettes/ess.plot.png
703b3d7801d12e3d334854aa2ab78ffb *vignettes/heatmap.png
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bf1b7db49ad9c1353e19e2e1aba5f1b2 *vignettes/lnl.plot.png
f8fa956f686a4723ab90fe13b3e9a914 *vignettes/param.correlations.default.png
814e541c8d0c14e2336a0ac82fa96e75 *vignettes/param.correlations.supplied.png
398127f999ad533a150d770ed8892c2d *vignettes/param.density.plot.png
4f88d6d35eb1af2d517a133456dbcc6e *vignettes/param.plot.png
d18b2a0571fc442cbb87607ed6a0e293 *vignettes/param.trace.plot.png
5ac28cae83aee3fdc2214981e012a039 *vignettes/pointsplot.png
4560205e65b470b08ac8eadf8537112a *vignettes/pointsplot2.png
01885acae8c3ed508a8f856bdbf052ae *vignettes/rwty.Rmd
0fd8b1c5aad9372f55e641965e733408 *vignettes/sliding.posterior.png
1cbc4e27bd68c5d5cb788220bbb88878 *vignettes/sliding.single.png
732b1c5e460a8f75a29d37ee5b75a4a1 *vignettes/splitfreq.matrix.png
62b962a469f74def15abfb315b92a63b *vignettes/splitfreqs.cumulative.png
c849b320f087bb29318f95c5c0ea6ff4 *vignettes/splitfreqs.sliding.png
2b77e5adb13b5fce68d69cbc4c20fba1 *vignettes/topology.density.plot.png
c1b5f9a03e1714293bfb8bf27c393247 *vignettes/topology.plot.png
f282fe77c6fd095f9094018ebd19a515 *vignettes/topology.trace.plot.png
