1dcca343dcb2531b4597705d207aad95 *DESCRIPTION
4b536a24115ac389a204704d9dbe1ecf *NAMESPACE
23528ea8a2ff2c1930661e41bb01d8dd *R/Ex_data.R
fc9d561f77e235d5d41e72992a73579d *R/RcppExports.R
ebb769d7b1a18d25391bacc398143ff1 *R/SegTraj_EM_cpp.R
0b0c9c758d407592156b530103de5fe7 *R/augment_generic.R
13427112eb6aa35ccbc2e6eed3a0a85d *R/choose_Kmax.R
7c160068fb297e97360a56cd1c89c5b6 *R/function_checks.R
95c79d73e6b104cff091b50ff40b42d6 *R/function_map_plot.R
4cb6be86920e3b599dc4bbe1e3d32eb5 *R/function_prepare.R
50e5ed9afb8b7be0730266dbf38dda5b *R/function_series_plot.R
387eaf9f716db164ee45041fd6f7c36e *R/function_states_plot.R
7ccb4b5cb58ace6ca2697c7d852efe55 *R/likelihood_generic.R
d20e2cf84d804ffbb6ad24000719a236 *R/prepare_HMM.R
f52c6e9481c7ad6660accde5dc7024a8 *R/prepare_covariates.R
7956f21eb5cd79917e712b8bb2498d8d *R/prepare_shiftfit.R
35085c58c19e6453f7a28097c0908a6e *R/segTraj_DynProg.R
6a60a544121c3f7e8ef1ec5aa239f86d *R/segTraj_EM.algo_simultanee.R
7aa8334932b91cf187014f1538e93c09 *R/segTraj_EM.init_simultanee.R
01715efae8da29a099cd18bd90a3073b *R/segTraj_Estep_simultanee.R
6b5896d930d8f9205febb1bde0075552 *R/segTraj_Gmean_simultanee.R
386fdff977b3486c8d344d1c1e17441c *R/segTraj_Gmixt_simultanee.R
da1c6ccbb7a55c456f4862839dca00e3 *R/segTraj_Mstep_simultanee.R
2bd9cf7547c3f482f4e0e7fb9889856e *R/segTraj_hybrid_simultanee.R
1472026adb3b786ae3f046edb4b0fab9 *R/segTraj_initialisePhi.R
52d437ec69968b061bbf23acc78ee632 *R/segTraj_logdens_simultanee.R
bdc321011cb4fec02f720e444ee38e6a *R/segTraj_neighborsbis.R
57c394e0b31eb13c73d6212307420815 *R/segTraj_plot_simultanee.R
fdf9f1cf840f79feec6b2e84e79bcd76 *R/segTraj_repmat.R
469c111f1921e721d1efb79a41bc5ae6 *R/segTraj_ruptAsMat.R
0c79a712cc3cef37ebd55027ca05d232 *R/segclust.R
2a40f1f9c107c95251d4d70570fca7b8 *R/segclust2d.R
bbaade64281f2995c58d28f299779445 *R/segmentation.R
4d4f7d012fff4306f667c344646fa1cc *R/segmentation_class.R
f7ee5562e8f6b604d79d6758060dc1ee *R/test_functions.R
17a4920e4521957f436a6dd22c7e9bae *R/tools.R
46bce4158006c0e1b28699cb3ef7123a *README.md
9fcb5e47b6b80d7f8848c0511d8458bb *build/vignette.rds
6e9bf3e30e7baf76c538b8048a6301e0 *data/simulmode.rda
7a69f7888659dd69e91eb9dee3401ddb *data/simulshift.rda
a3d378e7595090eeff49a9afaca4b854 *inst/CITATION
79471801069ad51aa4be22b4efce2a75 *inst/WORDLIST
13cff7cd85585f3ac55825b146460633 *inst/doc/v01_preparing_data.R
b9f9dfb38cef4f6e7d120c6471252cc9 *inst/doc/v01_preparing_data.Rmd
08ad61b5310d8d9ce959613225f4cf70 *inst/doc/v01_preparing_data.html
b3760b588541af521e30f1cf87885613 *inst/doc/v02_run_segclust2d.R
65605f6ee3d8a9b70b144ce7022dbd08 *inst/doc/v02_run_segclust2d.Rmd
7bdad771df4a875e06bb124caad9ce43 *inst/doc/v02_run_segclust2d.html
c7010cc4597274c136e2a225ca6ebfef *inst/doc/v03_explore_outputs.R
f90eb63897f6535c141ab43f6392e714 *inst/doc/v03_explore_outputs.Rmd
31d55183f842cf2a3266c8a571c55e63 *inst/doc/v03_explore_outputs.html
ea4d44454b1cf03e04408914565ea3b9 *man/DynProg.Rd
0f76ac51891cc65082bed23fff7e5192 *man/DynProg_algo_cpp.Rd
81fd51968e8d05b8885922b59fbdd984 *man/EM.algo_simultanee.Rd
649eae493f205214ff27b12c7819ff73 *man/EM.algo_simultanee_Cpp.Rd
2e7fad7c40bec9c0a4e9ed13fb97f193 *man/EM.init_simultanee.Rd
ff8841a1d7f54fa67d32c2644dcbcba2 *man/Estep_simultanee.Rd
caf56f703a399135516e1ad23aeada2f *man/Gmean_simultanee.Rd
948e81593a795a36f609df2bdde86ee8 *man/Gmixt_algo_cpp.Rd
b2498153bcb32e6bd1d3e0716c9766e9 *man/Gmixt_simultanee.Rd
7583770c77b991bd5d883c632769284c *man/Gmixt_simultanee_fullcpp.Rd
eb4d4362916859eab39acefb79b85d80 *man/Mstep_simultanee.Rd
95cc716cbfaa6bd4eda7e4cbcb128fff *man/Mstep_simultanee_cpp.Rd
6c7e7e1131cc536a8c9f22300fec9fa5 *man/add_covariates.Rd
b9ee422b4cc700be7244cfe40270347c *man/angular_speed.Rd
6695343165565c0caa7211256abbb567 *man/apply_rowSums.Rd
db8ec7ef7e079c0d546483c31bffc6f0 *man/apply_subsampling.Rd
a44eb28c2bcf02b45819fdbb7af78eb7 *man/argcheck_Kmax.Rd
b2607103311560e47c7f72e66bf817e4 *man/argcheck_diag.var.Rd
98a2bea2af0ae8282a1e3162cf4ee4d5 *man/argcheck_lmin.Rd
c1c1e5780fb9d6e722135b6c87e86053 *man/argcheck_ncluster.Rd
b95b79826ae4d70872d10ee720199faa *man/argcheck_order.var.Rd
1b532ecbe56c32ddd350f34543b05e0e *man/argcheck_ordering.Rd
ffc7a4f6d0af0169c1c432321a575e1f *man/argcheck_scale.variable.Rd
34e111ef8ea467611374b85991bd9a61 *man/argcheck_seg.var.Rd
4d0df994294795ca41c7506a6423fcaa *man/argcheck_segclust.Rd
e694afef89d82e6d197969e50a288de8 *man/argcheck_segmentation.Rd
9e2491f1f875370aa8f365d2f7db1ef7 *man/argcheck_type_coord.Rd
e51e0d526d32792e7edf03d2b2ca9006 *man/arma_repmat.Rd
9ef22ae7a5cc8d371fe6fe49e3376545 *man/augment.Rd
83b080600395926036ebfa4fa4a215d5 *man/bisig_plot.Rd
7be14442046a5cd4bf098e5a906d4a92 *man/calc_BIC.Rd
f7e428a9dc968c8878eb9bb18929b282 *man/calc_dist.Rd
491db4b592e87350268b6184aff13949 *man/calc_speed.Rd
123149b56fafc1b4df3480297fca76b5 *man/calc_stat_states.Rd
9b9d966dcf8703f8976f1ec8027d9d15 *man/check_repetition.Rd
4eb673e3e11045da4cf5e1b3f1ad650e *man/choose_kmax.Rd
b1d21e51d4422bfc45e6b5495a64567d *man/chooseseg_lavielle.Rd
6641e8fcc007dd233fbd71c25ccba70e *man/colsums_sapply.Rd
c695aa52870682cecb887127d06bec74 *man/cumsum_cpp.Rd
506bd629443f649b33f1565c0fceda35 *man/find_mu_sd.Rd
7b53ea580715b1936d039fcdb0438350 *man/hybrid_simultanee.Rd
65bd08768bc16015a39d8d4d9a062738 *man/initialisePhi.Rd
f1934a245fe004b80db8d577b3273774 *man/likelihood.Rd
0aa6a99a2af9d72eaeec8046806b2926 *man/logdens_simultanee.Rd
51a09138899fc6519f7bc848f2edb13f *man/map_segm.Rd
bf5b9c5978da6a48d653701dd2a9625e *man/matrixRupt.Rd
efbdecd7d2389a156eda7907c0740d28 *man/neighborsbis.Rd
fd86a194afe6afecd327fd0055c69955 *man/plot_segm.Rd
c7f71c6329dceb14a45806b19261c29b *man/plot_states.Rd
98c66ffd4aa4f43ee253d5f7aa88e734 *man/prep_segm.Rd
8558675d733aba27a7262094525a583a *man/prep_segm_HMM.Rd
12d51cf57db7b1abaef0cb693a3217d3 *man/prep_segm_shiftfit.Rd
5e6f58a1f99b484a9af5d402b331e21d *man/prepare_HMM.Rd
b33e7c6e2ea56fe5e19e4d5ebd309a4e *man/prepare_shiftfit.Rd
abbaf73ceb6037c7d4c9eeef4faa5cf6 *man/relabel_states.Rd
0eedabe3b7cbb1a449f381ea9dfeb4db *man/repmat.Rd
6a7920db527c9912ca2b85000b2c92b4 *man/ruptAsMat.Rd
a3a828fdefd5cfd9a6eab4893c8edbec *man/segclust.Rd
95dc2542d486e7f3d177ae1e38f39986 *man/segclust2d.Rd
be352ea78215fbacb9d9a200e7452286 *man/segclust_internal.Rd
42edfeecd57640190803f1aedee8152b *man/segmap_list.Rd
f233b507996267f10df9799777d66126 *man/segmentation-class.Rd
c9d17a6f4d12997142ed1f2a724c9b7d *man/segmentation.Rd
3abd839e727509a8aa85ca10388cea13 *man/simulmode.Rd
91b858525f9976bf72f0bcbf322f78bb *man/simulshift.Rd
6f1b4bf7ea87ce97701f4311bd999203 *man/spatial_angle.Rd
651254b6179881e08e80a2ed5b261548 *man/stat_segm.Rd
3f80a7b545bf2ff84085e273fff491ac *man/stat_segm_HMM.Rd
bb90cff679baa7ce85c3f3762e1d7e2d *man/stat_segm_shiftfit.Rd
2b4f40be1aefc696f987bb9b72a561c3 *man/subsample_rename.Rd
9020eb02bca05cf879d6ebef4b879023 *man/test_data.Rd
c6f7edc20b4172155fedbe0cb549d3b9 *man/wrap_dynprog_cpp.Rd
3f6769a3d19b987ace59bb01e4a5c8d9 *src/Makevars
630027b9c4921953a73e8712b2b8d22e *src/Makevars.win
163cece6eec6085923fc9f0c58d0343b *src/RcppExports.cpp
fde75a2789c286da5a88c1ac0fd63edb *src/SegTraj_DynProg.cpp
0176b4e9e88ef23be6e94c653f724112 *src/SegTraj_EM.cpp
3f69a12ce75b64d582bd8ef8f1fb5837 *src/SegTraj_Gmixt.cpp
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
ff3139c1cb0e14f2d7433546171363ed *tests/testthat.R
b2f7fe453ec642298ba22e5dfea0f077 *tests/testthat/test_segclust.R
b9f9dfb38cef4f6e7d120c6471252cc9 *vignettes/v01_preparing_data.Rmd
65605f6ee3d8a9b70b144ce7022dbd08 *vignettes/v02_run_segclust2d.Rmd
f90eb63897f6535c141ab43f6392e714 *vignettes/v03_explore_outputs.Rmd
