906c89967bdba164e7d687d90554d518 *ChangeLog
ecf9a5f9951e6f2d143004bc9971b4cd *DESCRIPTION
5dddedc37b0f792031695f083a52b3d8 *LICENSE
9965a2032e7fb2971ffd8866894798c7 *NAMESPACE
80d75bb248b1beacdb4f64847a515f51 *R/seqminer.R
ead63d8258b0216faf323b1bdb44b338 *configure
03bac3a45842690b138072e0f9cce234 *configure.ac
d41d8cd98f00b204e9800998ecf8427e *configure.win
1c96de0a2112c8f4cc6fbdb911a29912 *inst/doc/Manual.html
b94af6795e947307028d232aee84d501 *inst/rvtests/rvtest.MetaCov.assoc.gz
6ed4d335152649bfe88ce972d23440e5 *inst/rvtests/rvtest.MetaCov.assoc.gz.tbi
6e9beac74bc1ec51eeead95a58c2e57c *inst/rvtests/rvtest.MetaScore.assoc.anno.gz
543690c148fb9bccb7e8b3e05826f5f6 *inst/rvtests/rvtest.MetaScore.assoc.anno.gz.tbi
99237619851543e09bc2906e6a66c2d7 *inst/rvtests/rvtest.MetaSkew.assoc.gz
a2d22ed038bcdd63b2200f8a495ce0d8 *inst/rvtests/rvtest.MetaSkew.assoc.gz.tbi
9053a4d846251aa8123bebaaf4805153 *inst/tests/correct.Rdata
2911341f70069cb134cd0620e56f5c16 *inst/tests/testthat.R
e95e6420f0b8bdf2306dc87628a2c9b5 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz
8e1e8a6b0944b906b913d315aa4f8fe0 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz.tbi
30b34178034c34db61e46eeaf01fe863 *inst/vcf/all.anno.filtered.extract.bcf.gz
da2e7fb5756f4e027cf076ddcdb5eade *inst/vcf/all.anno.filtered.extract.bcf.gz.bci
a30627f5fed64983816d94ff2f90369c *inst/vcf/all.anno.filtered.extract.vcf.gz
eebfb3d8260a7def9f29034931b7f9e2 *inst/vcf/all.anno.filtered.extract.vcf.gz.tbi
9cc4f5122bb2e3b0b6b519f8c00d4fd7 *inst/vcf/refFlat_hg19_6col.txt.gz
51222ed1e3a90db6bb96daa83d386836 *man/SeqMiner.Rd
11fbed3577ba760ccb02db9b123d2512 *man/hasIndex.Rd
c3fbcbeee112655c33a7b33300b99405 *man/readVCFToListByGene.Rd
86bb67b698b57861f67c05538ea4a8b2 *man/readVCFToListByRange.Rd
8d600b7276b76ae23d1ec0f17251fac0 *man/readVCFToMatrixByGene.Rd
12efcfea63e337e24889b56ca8dbc0d1 *man/readVCFToMatrixByRange.Rd
64a1a33b6e026290fb670d6f09e68ceb *man/rvmeta.readCovByRange.Rd
65adccb4aeb5f07c2faffb9c05cdf5bf *man/rvmeta.readDataByGene.Rd
39669f356266ddd5fe13dc2755aaebc5 *man/rvmeta.readDataByRange.Rd
3e36a839b166130448ac3aeb8793a733 *man/rvmeta.readNullModel.Rd
c0eacc2c20089df41342e99184f7eec8 *man/rvmeta.readScoreByRange.Rd
b19f0239243cd9107ebbb1d68ed3aad0 *man/rvmeta.readSkewByRange.Rd
0c2479b6f1bd5f5b9691456deaa569cb *man/rvmeta.writeCovData.Rd
4871be9812da7f4521edd0739a987d72 *man/rvmeta.writeScoreData.Rd
8b23831eb3357bcdab4ddab9bb078ce6 *man/tabix.createIndex.Rd
fc7ce315132fc3595c92274405611b8d *man/tabix.createIndex.meta.Rd
4c5924fb5d8f255acf32d35bc65476aa *man/tabix.createIndex.vcf.Rd
178eae1c41df6cafbdc567d308b47d53 *man/tabix.read.Rd
84a77495e29ef12a957497fac3b867b8 *man/tabix.read.header.Rd
3baee3e3f00a607afc2ddde6d8d61a9b *man/tabix.read.table.Rd
82f6a250ae90fc22cbb7734563d1c4db *src/BCFReader.cpp
a8302e38cecdde63fe299db71d42dd21 *src/BCFReader.h
f2dfc84a2dfd0290c2dc8d910bee0b53 *src/Exception.cpp
be9a7201c6ec40825118cd53f50f677f *src/Exception.h
6152e8ed6965dcfd82c318bbb49a5c2d *src/FileFormat.h
7e2b3c5bff8130ef64ecb6af89ea3c85 *src/GeneLoader.cpp
54e44e25de3378d5c46a8c0330f56320 *src/GeneLoader.h
2c67e2a01d43d65bb166661240e492a4 *src/IO.cpp
ef739574032b080e42d9fe1b2e0ec2ed *src/IO.h
452538bf33dc4bb5bdfd912fa5c4d37c *src/Makevars.in
d41d8cd98f00b204e9800998ecf8427e *src/Makevars.win
35ab78cec79cc06f404e0e0eeac81dba *src/Maximum.h
0d7f7e3ffa803a16ce5b06adfcaea722 *src/OrderedMap.h
a0cb740bd8ce684c99351d099e4bc26c *src/PatternMatch.cpp
99e9112b8d7dc4a8137be090242d1f11 *src/PatternMatch.h
10a321be45f3709dc6e77da323e0bc98 *src/PeopleSet.cpp
cbc062a62e16c021f8f7595252018847 *src/PeopleSet.h
7eefb9404550500c36612a2de43ba771 *src/PlinkInputFile.cpp
cea9d82e949f03b9094b3fa6c31c3df2 *src/PlinkInputFile.h
70bccc3a5d23fba307bccba4ae22060e *src/PlinkOutputFile.cpp
05f8aad8f969c9ab5f8366eea52da98d *src/PlinkOutputFile.h
b3a1c2e65eba2033418a7dcb42a10598 *src/R_CPP_interface.cpp
80f3ad21d334495663546dc43b7fdb83 *src/R_CPP_interface.h
4fa82852c252afeb318a57e6382ac7ad *src/RangeList.cpp
67561bb3238cf4939e11519bb7928e82 *src/RangeList.h
387eb89d34fe3c3d18b2d93a734d582e *src/SimpleMatrix.cpp
ed89460fc7151a3bfc200b066c30ee23 *src/SimpleMatrix.h
db2f9ea5945e6c734eb1084e75be3f69 *src/TabixReader.h
8daf08291f0841ac552190e1271cd0d7 *src/TypeConversion.cpp
970f1592196fa035f9c021f7e4eeea99 *src/TypeConversion.h
7e44626bee9969473c4970346f7693bb *src/Utils.cpp
392efa6e2a969fff2810b3ebbc5e0800 *src/Utils.h
354557b9450e958598141e4a1ca25425 *src/VCFBuffer.h
6dd8895b1f308a6f48202f0f54ee7ad2 *src/VCFConstant.h
598a4a74569c09ad42bf6d1c340711af *src/VCFExtractor.h
cd9af145da827e809947e0f915171e1b *src/VCFFilter.h
938cd6107b805c0c53c71202c14c9f02 *src/VCFFunction.h
117ba480aba2f66b889425ade7ff9d69 *src/VCFHeader.cpp
fd0e89070c4faa3ccb3a5aa1de32fe6c *src/VCFHeader.h
47590e10745ed94857230e87700200db *src/VCFIndividual.cpp
ff41af0fa67d5e91ccc7d9b66986a9b3 *src/VCFIndividual.h
552321d7a3b6481df8133c33e0d5c104 *src/VCFInfo.cpp
9c67c0226efd1fa4abbf983e20755859 *src/VCFInfo.h
7426e4eed8bfca1d9bd83a9100e3dfd1 *src/VCFInputFile.cpp
465d0a0528782dea287bf8260e970bdf *src/VCFInputFile.h
dc2fd142e35674a1b5acdc2045b64607 *src/VCFOutputFile.h
f847d5fd6668bec3c37e88f55d02e48f *src/VCFRecord.h
58c30e048f64b8bd851799393a7df1d5 *src/VCFUtil.cpp
e9e2d549f9cdaf5f06505e30fb64ef8e *src/VCFUtil.h
c99de6988f92eec0eb978e4298303d7d *src/VCFValue.h
ae3bbb54820e1d49fb90cbba222e973f *src/adler32.c
aba13a3883d7d117af33a6d8fe8c1ed1 *src/bam_endian.h
a6b6c0b958dfb0f0ff80d62c155edafa *src/bcf.c
613fc63007d9a00f264af2666fea9a04 *src/bcf.h
211ee67983ce33eb930c49e1266fcf23 *src/bcf_index.c
930069995256e8e2e2c25db302584e66 *src/bcfutils.c
a9f135cf6c369a13d43510eaff9c983b *src/bedidx.c
8852127d3739f6200e474aa2bd69f6a7 *src/bgzf.c
abd042e94b527d534410175167a07e4a *src/bgzf.h
da5cc4b39d85aa5306d37b505915a9a7 *src/blocksort.c
a046a912c4dcf43610d78761b80a85c2 *src/bzCompress.c
ece1cf781f240938187887bf2cee8dba *src/bz_internal_error.c
ddeb76cd34e791893c0f539fdab879bb *src/bzip2.LICENSE
dbe49534045bebcd393d3d0d5ccec28a *src/bzip2.README
3b20c77d5a678301ee42f57456108f47 *src/bzlib.c
433684bb4b14928660d748d3c65890a6 *src/bzlib.h
1bd8c561910cfe13a8a837f75d3dd223 *src/bzlib_private.h
6a0331bd872c8053af4bfa357fbd5415 *src/compress.c
5fbc88f708793e02b648d0fe48fbbe06 *src/config.h.in
1339c92938d2594a6eecfa21c374d1b6 *src/crc32.c
f28d16b67efecdfafa0d816a7d982124 *src/crc32.h
c388b373b62850024f2a74fe6bf8db53 *src/crctable.c
0d9172e7f795bfa145a86c5dfa8edc8c *src/decompress.c
7d6b26389539ec2a96b9bd489af0d18f *src/deflate.c
a76eecb979102fa97ffb710f142ad2f9 *src/deflate.h
29d02cff161bde3e4e717b25a2ab7050 *src/gzclose.c
c2378bfb5d671b91030441266d2ecf45 *src/gzguts.h
b299fbea2ecb0ff33a0b3cf3c6b33f3e *src/gzlib.c
d0e145140eefec33fc546a32c7e4cc21 *src/gzread.c
9142e7a574dfa1864856351937df8eaa *src/gzwrite.c
ec0f167e71cef3db1679b8bb5d2426a8 *src/huffman.c
4b7a7db0fc95f2cc50361545857a8550 *src/infback.c
acbe5c3d4bf679e6a41eed4569abfa93 *src/inffast.c
f3669099d3f571dbc0426401ed5f50e3 *src/inffast.h
7fa3e91804601b6618c915b76a8dc332 *src/inffixed.h
27d100516db4c9dcf46ae8cd2c98f803 *src/inflate.c
8f1b05cdf36a269882a955071b140162 *src/inflate.h
111edb79f982a014876b4a830372aed2 *src/inftrees.c
ec87be89b9bcca8ced80a70f857e823b *src/inftrees.h
48cd8fc534ffa1468ad3a66fcf280712 *src/khash.h
89e7b91e8dd04627d7ed7833322e8ce9 *src/kseq.h
05ffa87e772c91c82b5a7f33dea80aea *src/ksort.h
6b1b42bbbbe56cdd2bdec966f4fbc3e7 *src/kstring.c
e6fa98213a711d4a816a9c35a0a90bdb *src/kstring.h
1fa3a687fb32f1dce8e7b5f11453398f *src/randtable.c
1c2237d6881d9e46eb99d29ed2ea4434 *src/rvMetaLoader.cpp
c07c26caf466bb57b09696c2c4925f9b *src/rvMetaLoader.h
073dee26913d352b90b2b9775150e084 *src/seqminer.c
9ea09d7361b319cb5e4ca2d752a70e9d *src/tabix.h
a2b004b6313df7ebe262b7c26f460289 *src/tabixLoader.cpp
5c463acce24b036d6912ab184f9de454 *src/tabixLoader.h
6e800f6393b2d1f4129c437e250ff2a9 *src/tabix_index.c
af8a4b0b8282727178f70ab7f295348e *src/trees.c
51fdcb3e2ccf60ca13c06920c89296a3 *src/trees.h
e62eee8757fecfc2cfbf2dda8956097e *src/uncompr.c
53fc599227476643816a4a82f647e9cb *src/vcf.c
2c7e4b4fadbd768d1a860f861fe55dd1 *src/vcf2genoLoader.cpp
e7d01db88c60614c76e804c601770cca *src/vcf2genoLoader.h
ae0ff652c3313d1b5cb7e5e45febd0cc *src/zconf.h
f454cab418099da4ed65aec38bc0db80 *src/zlib.h
795f161ed019064a9a360b15050c34c1 *src/zutil.c
0b31d0c893d2f609cf5d5833e3c0b21f *src/zutil.h
07bb628557c4a50c4d8bc287701a9000 *tests/tests.R
