02f26b3bafd3c5f6a1e685991ee20061 *ChangeLog
ae9a849ed811cb2ede5d7b85543ff0fb *DESCRIPTION
e56e0d459ff5cf6849aa20881c79bf0a *LICENSE
f47f171258d37858064cb460710ce893 *NAMESPACE
c7f735747447c989c5abec27f25dd8e6 *R/genMakefile.R
f453b2311314ffac0af627bfffc30109 *R/seqminer.R
ac0c16388fc7ec77c17a9aaa599f964a *README.md
0e3def53fcb144f646aa72ce734d388d *cleanup
273daeecfbca72c63933b42fa4b5e9dc *configure
60ab71a6ef4de471df3c059adcff4f64 *configure.ac
d41d8cd98f00b204e9800998ecf8427e *configure.win
a7aa8e76f7e4646af6b644cdf37f2cb7 *demo/00Index
34ab676ae0614287c6170163dbcc0c44 *demo/annotate.R
80afcb0fa924316b839b3d56655d05fe *demo/meta.workflow.R
076b6535f57410f9475402c8748869cf *demo/vcf.workflow.R
14c1058b2d6d010c568d15f5570b5166 *inst/CITATION
df07ff391104874a068fcebeba818c2b *inst/benchmark/output.png
172c0f6fefb190a6621d83626879d8df *inst/benchmark/seqminer2_benchmark_script.txt
0fc479584e48a4ae306ba1121fa429ed *inst/bgen/all.anno.filtered.extract.bgen
be4d632ee62142e3fceacf0a5c5e7f2d *inst/bgen/all.anno.filtered.extract.bgen.bgi
9ebec06f2cb97dcef8b5ada47369469a *inst/plink/all.anno.filtered.extract.bed
0190a64ccb403c31bad91f3ee2e3c833 *inst/plink/all.anno.filtered.extract.bim
614a24fccf790641566a70999938ee64 *inst/plink/all.anno.filtered.extract.fam
751c636c82b643e5a9498591b5218032 *inst/rvtests/cfh.refFlat.txt
b94af6795e947307028d232aee84d501 *inst/rvtests/rvtest.MetaCov.assoc.gz
6ed4d335152649bfe88ce972d23440e5 *inst/rvtests/rvtest.MetaCov.assoc.gz.tbi
6e9beac74bc1ec51eeead95a58c2e57c *inst/rvtests/rvtest.MetaScore.assoc.anno.gz
543690c148fb9bccb7e8b3e05826f5f6 *inst/rvtests/rvtest.MetaScore.assoc.anno.gz.tbi
f3c9e5e6899c4ad42aa59cb70084b6ee *inst/rvtests/rvtest.MetaScore.assoc.gz
a5b24886972d5f229068eee3449f076c *inst/rvtests/rvtest.MetaScore.assoc.gz.tbi
99237619851543e09bc2906e6a66c2d7 *inst/rvtests/rvtest.MetaSkew.assoc.gz
a2d22ed038bcdd63b2200f8a495ce0d8 *inst/rvtests/rvtest.MetaSkew.assoc.gz.tbi
e3b70c9d450ffc3505f6b60025605363 *inst/tabanno/codon.txt
587f0fb382bf9328f31d9c0b48dc63ba *inst/tabanno/input.100.vcf.gz
fdb819f529759c78b5023b530904974f *inst/tabanno/input.demo.vcf
cddf8f9094beb0f87332bee2abb860b8 *inst/tabanno/input.test.plain.txt
5da124f1fde1b084dafcf5a870f46b1e *inst/tabanno/input.test.vcf
7e51a21043ce478b9cd506e0b8162697 *inst/tabanno/priority.epact.txt
23e5d1b21219abad05b0503e88af00be *inst/tabanno/priority.txt
e68c266d8b91871bee9d06053fc338b3 *inst/tabanno/test.bed
d29bd9d0fefcb9559e3b3b649007b3b6 *inst/tabanno/test.dbNSFP.gz
cead2c0cb02fe1fd2ed7cd610c38bc3d *inst/tabanno/test.dbNSFP.gz.tbi
04b35b0c9a1d2799782d2ad34fa0684c *inst/tabanno/test.fa
54932744e3eed15da9808ea28475cc98 *inst/tabanno/test.fa.fai
ed581f9cebe1457335b2fd0463f88f58 *inst/tabanno/test.gene.txt
1da7da33635f876f5633bee3f0225ed9 *inst/tabanno/tmp.vcf
4a020714b9fa93eba566e0c2bb25086b *inst/test-triallelic/bi.MetaCov.assoc.gz
2eee7ff9004abe2de40acde2760b5866 *inst/test-triallelic/bi.MetaCov.assoc.gz.tbi
850b91847ee903f1fdd318aab9c9f0e5 *inst/test-triallelic/bi.MetaScore.assoc.gz
68e1934efe879e01ac7da855d29e19f7 *inst/test-triallelic/bi.MetaScore.assoc.gz.tbi
890073ddabccd2c71900390ae8000700 *inst/test-triallelic/test2.study1.MetaCov.assoc.gz
2f34c1346772b0f562538cde569d73f2 *inst/test-triallelic/test2.study1.MetaCov.assoc.gz.tbi
e0b338973acced5ff87498c8619deb14 *inst/test-triallelic/test2.study1.MetaScore.assoc.gz
f33bcb855edc6be90e220caa636c2c96 *inst/test-triallelic/test2.study1.MetaScore.assoc.gz.tbi
603e56109c44ed35b1ad1fe1d650ede2 *inst/test-triallelic/test2.study2.MetaCov.assoc.gz
1455b60178b299a5812998672ffd13e1 *inst/test-triallelic/test2.study2.MetaCov.assoc.gz.tbi
b70054f3a6eda6678589f53d8402d533 *inst/test-triallelic/test2.study2.MetaScore.assoc.gz
e43c651341d71beb9a3e0cf3ee86b43d *inst/test-triallelic/test2.study2.MetaScore.assoc.gz.tbi
337817ebcbac99199c69a28a3d492aa1 *inst/test-triallelic/test2.study3.MetaCov.assoc.gz
a3ff23c263ff93c8a05d63167ef5ec60 *inst/test-triallelic/test2.study3.MetaCov.assoc.gz.tbi
5dece52eca524765dcf1d01945a9267a *inst/test-triallelic/test2.study3.MetaScore.assoc.gz
0f5a64d003760e23cf42a9abdc927a63 *inst/test-triallelic/test2.study3.MetaScore.assoc.gz.tbi
890073ddabccd2c71900390ae8000700 *inst/test-triallelic/tri.MetaCov.assoc.gz
2f34c1346772b0f562538cde569d73f2 *inst/test-triallelic/tri.MetaCov.assoc.gz.tbi
f6c5fe224a30c61aa809e68850b88e94 *inst/test-triallelic/tri.MetaScore.assoc.gz
8fe4f2a4966b755f39e1587d11efb046 *inst/test-triallelic/tri.MetaScore.assoc.gz.tbi
03b777e22fde02a18b2f523ff327e2f2 *inst/tests/correct.Rdata
e95e6420f0b8bdf2306dc87628a2c9b5 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz
8e1e8a6b0944b906b913d315aa4f8fe0 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz.tbi
30b34178034c34db61e46eeaf01fe863 *inst/vcf/all.anno.filtered.extract.bcf.gz
da2e7fb5756f4e027cf076ddcdb5eade *inst/vcf/all.anno.filtered.extract.bcf.gz.bci
df429b3d6e2d5e0e6bbbcb795430d2cd *inst/vcf/all.anno.filtered.extract.headerFixed.bcf.gz
dadea91bf7fa4c1e93edf1c7cb08f7c2 *inst/vcf/all.anno.filtered.extract.headerFixed.bcf.gz.scIdx
ca32db876ce78d2081fca12e46e1c115 *inst/vcf/all.anno.filtered.extract.headerFixed.vcf.gz
a30627f5fed64983816d94ff2f90369c *inst/vcf/all.anno.filtered.extract.vcf.gz
52e0fe3425c2c050045193e14a360262 *inst/vcf/all.anno.filtered.extract.vcf.gz.scIdx
eebfb3d8260a7def9f29034931b7f9e2 *inst/vcf/all.anno.filtered.extract.vcf.gz.tbi
9cc4f5122bb2e3b0b6b519f8c00d4fd7 *inst/vcf/refFlat_hg19_6col.txt.gz
bcaa86a548b7bfa57be368e6b2a771c0 *man/SEQMINER.Rd
87ab257265a80966e387a6148917e86c *man/addJob.Rd
b77734330c31942ce5f4b9164b165b9f *man/annotateGene.Rd
107af8d451f3c894df6919531cf14a30 *man/annotatePlain.Rd
7c3372211f3e8ea1c9cc0d767805400f *man/annotateVcf.Rd
0aae9a5325423af1afa9d970ecebd5fc *man/createSingleChromosomeBCFIndex.Rd
4de3607c0e2c003beb99af728af933c6 *man/createSingleChromosomeVCFIndex.Rd
bece50d1ebfa0f48b827c196a46b5be9 *man/download.annotation.resource.Rd
66b95c906394be56d4ffc2103105fb11 *man/getCovPair.Rd
80d87177fe46240de38b95c2efd9c368 *man/getRefBase.Rd
3409d7f17fc0dbb1ce20ad0f1f76fb2a *man/hasIndex.Rd
b6dd3dc91b808c4dbe11a6adff71463b *man/isDirWritable.Rd
341e0a43bf324b7a95ad236c1d0a6fce *man/isInRange.Rd
a04278c31f86bcf766ba0c954f0c0d00 *man/isTabixRange.Rd
d907f15d8b12b2f18578bcdbd54f3e6c *man/isURL.Rd
2742408451fd735f17751d54d7babd65 *man/makeAnnotationParameter.Rd
9f7c7e0a547d4c048eb93ab7f0fed609 *man/newJob.Rd
b8659ee2b3e9bedeeffddf5244cb095f *man/newWorkflow.Rd
b12bbbf32aec1e54f81ef62584877b18 *man/openPlink.Rd
e2f8bcf57bf592afe1ce8dd8e8f6ad74 *man/readBGENToListByGene.Rd
a1e8fb308374f2fb89613b0bf8b79834 *man/readBGENToListByRange.Rd
818feb0903764217460ffc62efe3c5e8 *man/readBGENToMatrixByGene.Rd
867390832e59803b056cdc9de37e2afc *man/readBGENToMatrixByRange.Rd
649461b2d557c57795a9d562a2a9b656 *man/readPlinkToMatrixByIndex.Rd
80aaaf1c5c9e747436f549ba7c58f0dc *man/readSingleChromosomeBCFToMatrixByRange.Rd
9f556896bf800d96803d860076edab49 *man/readSingleChromosomeVCFToMatrixByRange.Rd
5254d00423c1faca7121cb57ab61b0fa *man/readVCFToListByGene.Rd
6f6e75ece7a0f85ecc6c9eec5ddad37e *man/readVCFToListByRange.Rd
059216918e4401139745d168101b9217 *man/readVCFToMatrixByGene.Rd
81dbd9167f0fd5977a05ccfe6b76e85b *man/readVCFToMatrixByRange.Rd
bb4d59bdf94e6bd1081a2da069b911c2 *man/rvmeta.readCovByRange.Rd
ead10883f1c9d5b29385a9186733d143 *man/rvmeta.readDataByGene.Rd
fa9531efcb3198184b2593bf37b9cdd8 *man/rvmeta.readDataByRange.Rd
aad15da19391b8c2279c020e93d70691 *man/rvmeta.readNullModel.Rd
f99af092f4fc263eb9b07b6e0d65083d *man/rvmeta.readScoreByRange.Rd
46ba752f57a34930dab3d612b8222964 *man/rvmeta.readSkewByRange.Rd
44b5eee3a76342bc100214bd5d6958c3 *man/rvmeta.writeCovData.Rd
2c25fe2f18970054a0bfe685443a5841 *man/rvmeta.writeScoreData.Rd
f7af656fe0c02797f72ec1914713d97d *man/sub-.PlinkFile.Rd
2e3223a4829ef2bf2efff0fca9e8ec93 *man/tabix.createIndex.Rd
14360d934187e7a519081b850fdbe654 *man/tabix.createIndex.meta.Rd
0e73bbdaeb5c30d5c809e2daa4b8fe88 *man/tabix.createIndex.vcf.Rd
94df4652e46e8e6a5edefe715ebc6091 *man/tabix.read.Rd
e2c7b768e5f85b5a95a16a08c9def8d2 *man/tabix.read.header.Rd
0693e8785d06eb73dfc61bd3e83fc467 *man/tabix.read.table.Rd
39669760127c150e20c3e3a93e6789d5 *man/validateAnnotationParameter.Rd
11503cc8b76406b5ecfa915ab65ca57d *man/verifyFilename.Rd
71049753aa7f220312508a092bdb5720 *man/writeWorkflow.Rd
7d5d1a014c9780ae010fa734625636ff *src/AnnotationController.h
d85b92c76dcb55444027a6a8d99e27cf *src/AnnotationInputFile.h
6021462af480441309bfb226d4d29cc8 *src/AnnotationOutput.h
22949da903051122fb56e721a17ae893 *src/AnnotationOutputFile.h
a118eaa3a82b335229fe08221d59165d *src/AnnotationResult.h
50cd872876c6e5d4a70c59bdcc32f9e5 *src/AnnotationResultCollection.h
c51a61dc863f832884d5bf5e118f7002 *src/AnnotationString.h
8c1935166f54eb3af9245baef71a860a *src/BCFHeader.h
7a65fc317ffb47519f6fde81f80f7b8b *src/BCFReader.cpp
a8302e38cecdde63fe299db71d42dd21 *src/BCFReader.h
c20e1539fa9de68d3dcd3cf5cb7d55e5 *src/BGenFile.cpp
98bd0242d2d19ec21c131befec432cf6 *src/BGenFile.h
9a21a17ee7467e2e320d24193e4e2c0e *src/BGenIndex.cpp
e751544ecc74e5e67e5b21a4dc0690d0 *src/BGenIndex.h
bfb6f39cdae75bc1c6a9cffe8bbe6720 *src/BGenVariant.cpp
8f81958d109dee50348fc97d9abd9bff *src/BGenVariant.h
0199633ad5c2625a4e50b43efa82d070 *src/BedReader.h
fd29ae701489560e35ec9b70a9be83b0 *src/BitReader.h
dbae9ebd1145ca90bfc90e3b3bc9f5be *src/Codon.h
d69a4a44faf4874925b39227b01a447b *src/Common.h
ed6e75a2eb4b48eec009147f8e2cec47 *src/CommonFunction.h
f2dfc84a2dfd0290c2dc8d910bee0b53 *src/Exception.cpp
d859854363a64d9326fdcc7864ae059f *src/Exception.h
a35ca7176ce98a73cc231422dde7923a *src/FileFormat.h
0875150c524d0ead59c28104e5f2a68e *src/FileIO.cpp
46da1d3bf4101788cfe57d697b9fc8cf *src/FileIO.h
5c9aa66706b4e5f8ca10f9edd877ae0d *src/FreqTable.h
4131ba5a2da46794ab3507390f46af9f *src/Gene.h
ea40b371329fb429318a1efa04feb75d *src/GeneAnnotation.h
222b54973e8c0f6de708737c566e73c9 *src/GeneFormat.h
84c320efa2cd14da461a797540465cd3 *src/GeneLoader.cpp
54e44e25de3378d5c46a8c0330f56320 *src/GeneLoader.h
830acfc5c1e2ea6299693f55fd91e4c0 *src/GenomeScore.h
a71b77fdc2a46b4298dddfbbe2f7d086 *src/GenomeSequence.h
47e38da7377fc11ba10b374a6a4c13a8 *src/HiCExtract.h
7379f7e85604c214732267e58e2a78b3 *src/Indexer.h
422d83b84e05058cdff9a2032fc2b196 *src/LogFile.h
921fed06a9958cd13a93a879718e5a95 *src/Makevars.in
31ec2f83fa50a09be2c7a8c3be48ed29 *src/Makevars.win
d9fbc638f23c8635a9fd66910e89dfd2 *src/Maximum.h
ad5c71a61629dcb2e2189310f9452e89 *src/MmapFile.cpp
8ae811fe32127ee715b80d2992be8367 *src/MmapFile.h
ec4ad4b37abe9e5d654ed2879e0fb200 *src/ModelParser.h
62726a70332febee2ff947caef9ea5e5 *src/OrderedMap.h
a0cb740bd8ce684c99351d099e4bc26c *src/PatternMatch.cpp
a25d2a59b7051ac1040b412af196a2d7 *src/PatternMatch.h
0e84390253a3b4104ece60b20b4ebf02 *src/PeopleSet.cpp
cbc062a62e16c021f8f7595252018847 *src/PeopleSet.h
cfb270815c54addb7b420af7b125a741 *src/PlinkInputFile.cpp
1bd3d8b503c52f3a3926581560ca1993 *src/PlinkInputFile.h
70bccc3a5d23fba307bccba4ae22060e *src/PlinkOutputFile.cpp
05f8aad8f969c9ab5f8366eea52da98d *src/PlinkOutputFile.h
baa046303cdb0d186d7ea8e1be042959 *src/Priority.h
baf138407a38de43b7f6296e35271254 *src/Profiler.cpp
720f60432fdcd570d5ec172ad025ab7e *src/Profiler.h
cdfdb88cd46def21fa88bc0b4ed207d7 *src/R_CPP_interface.cpp
5e45a302926d5fcbbdef33011e4caafb *src/R_CPP_interface.h
976c9bf0d2f8a271883f5f34cef4c2f6 *src/Range.h
b65edccbd58a9489cf5fa02de266fcc5 *src/RangeList.cpp
92adf91c6b152d0107fb08e416afdf67 *src/RangeList.h
58ff89023d1ba21a3e2dc28d91a94710 *src/Rannotation.cpp
110ffcd97346fbbad8e9a29ea62b45df *src/Rannotation.h
3d1b5b685392b80254b22242a5d43a9b *src/SequenceUtil.h
09969ade4377eee9926543fc2a56494a *src/SimpleMatrix.cpp
11ece06b1566755322771d64eb705bcc *src/SimpleMatrix.h
6689621f7dbc49a740c515e216369be0 *src/SimpleTimer.h
08e1854a94c75e6f6c56825755f7a63e *src/SingleChromosomeBCFIndex.cpp
d8174c3b63510c52b545ab7c6ad861cd *src/SingleChromosomeBCFIndex.h
6d71c66da8306d6dedf64ed3b4e5a2a7 *src/SingleChromosomeVCFIndex.cpp
627e259b9ae73856b51757b6c7895981 *src/SingleChromosomeVCFIndex.h
794e93aa0605a3b79b119a00f9853ecd *src/StringTemplate.h
b692c07b3d4829ff582d73b5ea0d7e58 *src/StringUtil.h
99523dfce928d9aa4dee61aa40924e94 *src/TabixData.h
94a83b9467124a2e1d2a60af5c0b89b0 *src/TabixReader.h
965acc0992c16a39838fe27c24382677 *src/TimeUtil.h
a6f33ff1510e19cf36b2f02223bc07b9 *src/Type.h
8daf08291f0841ac552190e1271cd0d7 *src/TypeConversion.cpp
4869daac0bce226bd2f971849d687f1c *src/TypeConversion.h
7e44626bee9969473c4970346f7693bb *src/Utils.cpp
657373677e934c4ff0ef7475c450555a *src/Utils.h
354557b9450e958598141e4a1ca25425 *src/VCFBuffer.h
6dd8895b1f308a6f48202f0f54ee7ad2 *src/VCFConstant.h
598a4a74569c09ad42bf6d1c340711af *src/VCFExtractor.h
cd9af145da827e809947e0f915171e1b *src/VCFFilter.h
938cd6107b805c0c53c71202c14c9f02 *src/VCFFunction.h
117ba480aba2f66b889425ade7ff9d69 *src/VCFHeader.cpp
fd0e89070c4faa3ccb3a5aa1de32fe6c *src/VCFHeader.h
47590e10745ed94857230e87700200db *src/VCFIndividual.cpp
fdadc609c6b9845d79772c0495ae92f9 *src/VCFIndividual.h
552321d7a3b6481df8133c33e0d5c104 *src/VCFInfo.cpp
9c67c0226efd1fa4abbf983e20755859 *src/VCFInfo.h
0aa89fd35ac0ac3d564a9f6a11d50c9e *src/VCFInputFile.cpp
0466e0349cc704dd6bdb0a30b86d982e *src/VCFInputFile.h
dc2fd142e35674a1b5acdc2045b64607 *src/VCFOutputFile.h
d476b2ca2fc0d5678c500260e2642f3c *src/VCFRecord.h
58c30e048f64b8bd851799393a7df1d5 *src/VCFUtil.cpp
e9e2d549f9cdaf5f06505e30fb64ef8e *src/VCFUtil.h
a8701f3993ab3b1f29f9939c9ef2b2ef *src/VCFValue.h
4aace56a7d346d6765729d737f2e9cf6 *src/bam_endian.h
2356496b808d28208412c779b04436cd *src/bcf.c
22da20fdaefa26c61e8daa024717fd43 *src/bcf.h
108f3114615821f1b3dcf1e393b51147 *src/bcf_index.c
1b4531d5ac23a84ba35bee5612ab5355 *src/bcfutils.c
4eee226a2462a52685e51c2566de34a1 *src/bedidx.c
00db1deb43b8147f6db71b6a2dbfe23a *src/bgen2genoLoader.cpp
4451c8c959a22197ab55c181b7faba44 *src/bgen2genoLoader.h
1a70b01885a5be961c7a6d54e4ed2c3c *src/bgzf.c
abd042e94b527d534410175167a07e4a *src/bgzf.h
5fbc88f708793e02b648d0fe48fbbe06 *src/config.h.in
d31777ef90d1369a52049ba0ac3c0375 *src/htslib-1.16.tar.bz2
d8eb17ba4c89a4a9337986e12ecfd50c *src/khash.h
42a41dedcca1491577474ab5492eaf7c *src/knetfile.c
9f249d8b98f08def9891a21cab0514c0 *src/knetfile.h
89e7b91e8dd04627d7ed7833322e8ce9 *src/kseq.h
05ffa87e772c91c82b5a7f33dea80aea *src/ksort.h
6b1b42bbbbe56cdd2bdec966f4fbc3e7 *src/kstring.c
e6fa98213a711d4a816a9c35a0a90bdb *src/kstring.h
c93caff4c29ab0e2cb337e5bb6258168 *src/plink2genoLoader.cpp
1705f53f13f9969916df3ef711843b93 *src/plink2genoLoader.h
e1ac23dc2ba6b66207ef5c25be77f325 *src/rvMetaLoader.cpp
3e282c8377c668d4e6add53c051f8610 *src/rvMetaLoader.h
1f55c32b6c9fcf3f0591dd469fe14bcf *src/scbcf2genoLoader.cpp
bf733e6082a02e0308a9293fdc47e73b *src/scbcf2genoLoader.h
fc5db68fcc2cb5f9a64acab62ed5f250 *src/scvcf2genoLoader.cpp
c963aa9881e9ccff6011a34efe5f30d2 *src/scvcf2genoLoader.h
12c2f4a8e55a83d998db139f533dca63 *src/seqForStat.c
8fb708242424e26d260794c7d2d3f1be *src/seqminer.c
532e39310b6061595e3a8271374e5e5f *src/seqminer_init.c
ff25cb260550f757e0ddb74f8bdedb4c *src/sqlite/shell.c
2600aa0a94622390b79c9a3e831229e7 *src/sqlite/sqlite3.c
64b7337996e86eabfeaab92ab9b396d6 *src/sqlite/sqlite3.h
c517bc5e763fd60cf0c7e930c496559b *src/sqlite/sqlite3ext.h
9ea09d7361b319cb5e4ca2d752a70e9d *src/tabix.h
a1c74df686125e2bd84986b3e519aacf *src/tabixLoader.cpp
5c463acce24b036d6912ab184f9de454 *src/tabixLoader.h
b3d1f9ff5595b24c70c4a1e4dd4efce9 *src/tabix_index.c
93c900336d06f0fae9c530cf09729c58 *src/vcf.c
e8974f40005ebfb5cf495906d4a264a9 *src/vcf2genoLoader.cpp
e7d01db88c60614c76e804c601770cca *src/vcf2genoLoader.h
92ec4f1796f26fd2f2cde346e6f59a4f *src/zstd/CODE_OF_CONDUCT.md
5430a03e6b1e9fdcf5a3e9aa7253db2b *src/zstd/CONTRIBUTING.md
39bba7d2cf0ba1036f2a6e2be52fe3f0 *src/zstd/COPYING
c7f0b161edbe52f5f345a3d1311d0b32 *src/zstd/LICENSE
c0b82d7bfb8a9e00fed304b86fcc975c *src/zstd/Makefile
ad551c6a4dc67f15e3511de38208ca30 *src/zstd/README.md
8e8609aae565569693340e7bbab49cf4 *src/zstd/TESTING.md
ffcc299bc21386aa4ee4d442f33f10dd *src/zstd/appveyor.yml
22f9424f4bc9e42e9c32b7c7d06639ed *src/zstd/build/README.md
9fcedb2d29212f2c0958d8c772e1dc86 *src/zstd/build/VS2008/fullbench/fullbench.vcproj
804157e77ebffaee7bdb51883054866c *src/zstd/build/VS2008/fuzzer/fuzzer.vcproj
8c514e8478c64a5edc6a66866a4f653f *src/zstd/build/VS2008/zstd.sln
c12811373a639b4ed2db6b213575d6fd *src/zstd/build/VS2008/zstd/zstd.vcproj
2f326befefc67360a8cd4bf5772f0845 *src/zstd/build/VS2008/zstdlib/zstdlib.vcproj
da6646f65d617a88c3ec1e4f3196153b *src/zstd/build/VS2010/CompileAsCpp.props
a05ce3233ddbf839a557f66b000cce85 *src/zstd/build/VS2010/datagen/datagen.vcxproj
67380b385b7637dadfb02d50772aba78 *src/zstd/build/VS2010/fullbench-dll/fullbench-dll.vcxproj
5739b2cef64c2a4d51a0d7df54c97119 *src/zstd/build/VS2010/fullbench/fullbench.vcxproj
e2836110cc2172349d5decf2a858ef1e *src/zstd/build/VS2010/fuzzer/fuzzer.vcxproj
1c293eb4aab3e6711d60287836750ec4 *src/zstd/build/VS2010/libzstd-dll/libzstd-dll.rc
ccfc7049e3d94a0e9de9f7cd448ccb44 *src/zstd/build/VS2010/libzstd-dll/libzstd-dll.vcxproj
d01b18eab878915ced3e4198d0fba61f *src/zstd/build/VS2010/libzstd/libzstd.vcxproj
9f4a1a9693e29dc38ffe753bd89f6b89 *src/zstd/build/VS2010/zstd.sln
bc6da55ac1375d4a70aa15ce5ac1c9d1 *src/zstd/build/VS2010/zstd/zstd.rc
c6ec26d50ddd051ed2d1e143508ebb75 *src/zstd/build/VS2010/zstd/zstd.vcxproj
d416af5dff82443e3abdba248ef8b57a *src/zstd/build/VS_scripts/README.md
6be22d9d10b4b50cba68092ed1200232 *src/zstd/build/VS_scripts/build.VS2010.cmd
43b7845346e9f79f44f12f67ac3e2002 *src/zstd/build/VS_scripts/build.VS2012.cmd
fda0c26c84d48c67b6ba20cd6aeacbd6 *src/zstd/build/VS_scripts/build.VS2013.cmd
1ec0a3965bc1834a966ad83c09554e48 *src/zstd/build/VS_scripts/build.VS2015.cmd
b5e1b320f91d37087569c759c98733ba *src/zstd/build/VS_scripts/build.VS2017.cmd
a12ddf6caa3e7443c56ea09d9e60073f *src/zstd/build/VS_scripts/build.VS2017Community.cmd
afb8d4603b4036f2b2dfe14a2dda7c70 *src/zstd/build/VS_scripts/build.VS2017Enterprise.cmd
4509befcc514bcf10aef4d84fa56e643 *src/zstd/build/VS_scripts/build.VS2017Professional.cmd
91ee1f1cad04b583b8f8f8e779f67c32 *src/zstd/build/VS_scripts/build.generic.cmd
f9728236a7e7c7c2abbf123ee3affeba *src/zstd/build/cmake/CMakeLists.txt
c9bda4a277a5899dfff34ff4fdf001e6 *src/zstd/build/cmake/CMakeModules/AddZstdCompilationFlags.cmake
826c12eeef7918b6dc681961d0b94a19 *src/zstd/build/cmake/CMakeModules/GetZstdLibraryVersion.cmake
81ea24755a21ed93add4528a533acf30 *src/zstd/build/cmake/contrib/CMakeLists.txt
dcdffd4e7d643661d8e5958ce1493ecc *src/zstd/build/cmake/contrib/gen_html/CMakeLists.txt
c6b49c8b030123265e7b1308bff72bed *src/zstd/build/cmake/contrib/pzstd/CMakeLists.txt
56b6a1fb04c09680c978f998f7c60d65 *src/zstd/build/cmake/lib/CMakeLists.txt
ffde197bbe012bf828a8b1c5044ebdcb *src/zstd/build/cmake/lib/cmake_uninstall.cmake.in
1ca93bc306861c3682088bc99ef21d64 *src/zstd/build/cmake/lib/pkgconfig.cmake
46eff74a0fe082e5d42f1f1657fd2004 *src/zstd/build/cmake/programs/CMakeLists.txt
9f3904f0ee96fe685222c0798535f1c1 *src/zstd/build/cmake/tests/CMakeLists.txt
56d46b1680947a46b7741e83a9ad92bc *src/zstd/lib/BUCK
c8e99b52f092f87f0c44b8232a95a2f0 *src/zstd/lib/README.md
23495c93034a3440448c352c96b83880 *src/zstd/lib/common/bitstream.h
2d80ad7ef389ef2f98f267cf4fefd07a *src/zstd/lib/common/compiler.h
7dca192972066536c48982222d00d496 *src/zstd/lib/common/cpu.h
13f026d6811e79c1b221857eef5f540b *src/zstd/lib/common/debug.c
1a0bdc6d9d8cd4495781bb121cc7ded1 *src/zstd/lib/common/debug.h
5ef7ad61db0132fb697685e30473998e *src/zstd/lib/common/entropy_common.c
51d0a68f1f2be6efe31e30d89c60836e *src/zstd/lib/common/error_private.c
aefc25214cc475871f9f5338a8235158 *src/zstd/lib/common/error_private.h
fa3396125d0579f63ecc520c100830d0 *src/zstd/lib/common/fse.h
788f97076d1bbbb0a858417e55fb56a8 *src/zstd/lib/common/fse_decompress.c
7f6cd615a29730d75f1d874adf78cf72 *src/zstd/lib/common/huf.h
3e4f2ea2cb844f0ab0cbddb75c675723 *src/zstd/lib/common/mem.h
c31508843541e94cca606f4cd58d7076 *src/zstd/lib/common/pool.c
f3183814e9950e6ee38448931051928b *src/zstd/lib/common/pool.h
2f7e26b98ff57e70519ecae388d7a283 *src/zstd/lib/common/threading.c
7cd83b9f5d0ce35069264420de43448b *src/zstd/lib/common/threading.h
b34e7ae723840c2b3d9da10bff339b0d *src/zstd/lib/common/xxhash.c
c65ac3f294abcaf5dc20fcf2c6a96924 *src/zstd/lib/common/xxhash.h
54f8b8aff36cd3896ff15d0c0109e25c *src/zstd/lib/common/zstd_common.c
f5facd4d5302b44b75065162b6156a5b *src/zstd/lib/common/zstd_errors.h
11d6ca6ddb2618f4df99943c15b8075a *src/zstd/lib/common/zstd_internal.h
8c7984cd11eb9a6c13a767adb5ca4eea *src/zstd/lib/compress/fse_compress.c
ce8e38844238ba6ae280651a2ea29620 *src/zstd/lib/compress/hist.c
0d6ced591b4f3b1a523d9f13f83be149 *src/zstd/lib/compress/hist.h
4e593024d47355a1ca5ab10b7b8c5c32 *src/zstd/lib/compress/huf_compress.c
9a8719d803f78a60b928b1e766a76d5f *src/zstd/lib/compress/zstd_compress.c
db4c46db9b8f5d53f845476c558d8e14 *src/zstd/lib/compress/zstd_compress_internal.h
97221b77fb745b8cc8eb3dde77013bc8 *src/zstd/lib/compress/zstd_double_fast.c
0d036e7501077db84cb2edd7584c4ebc *src/zstd/lib/compress/zstd_double_fast.h
baa4d50c3fc4ab94c042f6001dc77054 *src/zstd/lib/compress/zstd_fast.c
5f2b96fcb523874ffa386ebf29106208 *src/zstd/lib/compress/zstd_fast.h
348ead4afd735f7c72c193a6a6df07a7 *src/zstd/lib/compress/zstd_lazy.c
2e27cded6ac70ac68e1f9b8abaa8acf3 *src/zstd/lib/compress/zstd_lazy.h
d2f6d466c6f4688277f77f48b49c15ea *src/zstd/lib/compress/zstd_ldm.c
5c1421bc7baf5328534d441d048a0bff *src/zstd/lib/compress/zstd_ldm.h
7d50a55385ac8687114cdf4709347250 *src/zstd/lib/compress/zstd_opt.c
9f8be12edceeac5a7d3e91a01d6898fe *src/zstd/lib/compress/zstd_opt.h
ac69316245b81d280605becf5f9ed84d *src/zstd/lib/compress/zstdmt_compress.c
7af0b468815e07848db0c217b14cf4af *src/zstd/lib/compress/zstdmt_compress.h
27b7deac1091ac7a77ac86ce46703b85 *src/zstd/lib/decompress/huf_decompress.c
522359160ff7c5fe29ae2d59912b4e65 *src/zstd/lib/decompress/zstd_decompress.c
44b0d7f80a45d705e9f8bdf1a507ab0d *src/zstd/lib/deprecated/zbuff.h
88c640ed9639685f77b4275f9b761fcf *src/zstd/lib/deprecated/zbuff_common.c
18eb3499b4e59a13e6a2e3df414a85db *src/zstd/lib/deprecated/zbuff_compress.c
72a6ff36b696540519ec0cc8bb139d63 *src/zstd/lib/deprecated/zbuff_decompress.c
cd3a8b2186392ac65b92188142f36bab *src/zstd/lib/dictBuilder/cover.c
cca5c7815e190754748392a6605cdb7b *src/zstd/lib/dictBuilder/cover.h
fc2e211b286086c2a73fb65df6d998bb *src/zstd/lib/dictBuilder/divsufsort.c
f7c5557d985d5016f0a27122bd2c2496 *src/zstd/lib/dictBuilder/divsufsort.h
8dfc0999705ebda2017a7e201e5ffdc5 *src/zstd/lib/dictBuilder/fastcover.c
2ff947257ee256db072167ba3c1aa771 *src/zstd/lib/dictBuilder/zdict.c
06bdbe03418fd2d878c4e01d8f5a2076 *src/zstd/lib/dictBuilder/zdict.h
6d5ecfe501b1f11740c9014cf7c5d178 *src/zstd/lib/dll/example/Makefile
fb58ee5e72ba91fc4d79bd5942c43b31 *src/zstd/lib/dll/example/README.md
47d6ecb5277d8ef46410bc8111002ec0 *src/zstd/lib/dll/example/build_package.bat
42a1b71f602599ecd27100feda7570ea *src/zstd/lib/dll/example/fullbench-dll.sln
9e14feb4411e8065cca507fc867af7a8 *src/zstd/lib/dll/example/fullbench-dll.vcxproj
3cd9242562ffbf2d35e557218d7a7c7e *src/zstd/lib/dll/libzstd.def
3080e77b5e5288eeea50b1da1f96f037 *src/zstd/lib/legacy/zstd_legacy.h
97a29b1bf90eca834b00d8aa5d78ec79 *src/zstd/lib/legacy/zstd_v01.c
c220cad7ec4a5278b98a0a67871ba5fa *src/zstd/lib/legacy/zstd_v01.h
4ed6efc3037ada68cdb60e898f273916 *src/zstd/lib/legacy/zstd_v02.c
ee1b53a2275581d6e764d708df7a699a *src/zstd/lib/legacy/zstd_v02.h
0651ce0b9f37eb553bea9887c0088093 *src/zstd/lib/legacy/zstd_v03.c
2cab02dc7f500bcbc62fce763c4c430d *src/zstd/lib/legacy/zstd_v03.h
be2e3c880e452c0ef7199c77a2048f13 *src/zstd/lib/legacy/zstd_v04.c
ac3d7615ecb80f47c0a61f002e8e858a *src/zstd/lib/legacy/zstd_v04.h
209b433124c5a4aaa83e1579cd92da9d *src/zstd/lib/legacy/zstd_v05.c
93dca7fc86280962d10a14ef6cd15bf0 *src/zstd/lib/legacy/zstd_v05.h
7d65c5c7c952748b8009dd57f0360209 *src/zstd/lib/legacy/zstd_v06.c
90dbe162299cc99979945ffcc0e763ef *src/zstd/lib/legacy/zstd_v06.h
5c7abe92bdd2fcae992343f90a1d4474 *src/zstd/lib/legacy/zstd_v07.c
c1ff45b2bcbbaffccbbd1f73461fcbf6 *src/zstd/lib/legacy/zstd_v07.h
a1d1aa9bd20f3766013f98e1cdb8a702 *src/zstd/lib/libzstd.pc.in
ceddb5c40dab70294f482139c98701b1 *src/zstd/lib/zstd.h
17cba48c931960aa63d21809ae04ceff *tests/testthat.R
7af71552b805e3095ecb753c6ff8c997 *tests/testthat/test-triallelic.R
ef01a54d47380761e5c99555a59a2654 *tests/testthat/test-vcf.R
