39b83ac7efa6b4674acbb8c3eb0bf5e4 *DESCRIPTION
0c64144d2e30412fa713c6c28a7d8dbb *NAMESPACE
b59e6676f3da58fd2cfb9d7b179af726 *NEWS
4f9859e3d01d8487d22401a48c1c496c *R/CalcMaxMismatch.R
9ea45c6e196b34dda4d302b71eeb12a7 *R/CalcOHLLR.R
52f7c5dfe392433de39397685d1f2706 *R/CheckGeno.R
de0bd34d72b46716b5500642fb4b8c65 *R/ComparePairs.R
ccaaabc82f78df28c32aae4bf6e50a38 *R/ComparePeds.R
945a8340575b9d91845216d96d47150e *R/ConfProb.R
7bcf7f7149cec4595e99edaf78aba53e *R/Data_documentation.R
a2f09fa48dc3f749de152a6d069e851a *R/ErrToM.R
71ec220e861c1fd35ce1dcdf3212ee10 *R/FindFamilies.R
a9cba59afc4b8d53605797777a544f21 *R/GenoConvert.R
8274df60c6cff6364269e64aacbdc8b2 *R/GetMaybeRel.R
32bbf3371edcf3bc0de536c65f919090 *R/MkAgePrior.R
468a3b520ec75bc718ab797b1d835049 *R/PairRelation.R
6d4e4a806ee55ff1ec59a75d501da66e *R/PedPolish.R
2ac7719cb502eaa8a3243cef31b3c637 *R/Prepare.R
46e50ee0572671cd0e05f3d68171c480 *R/SNPstats.R
cdebcc5242b4396832f21d21473f7516 *R/SeqListSummary.R
3c1689edb8dc2a81b13ee9ff22e33b2c *R/Sequoia_F90wrappers.R
23a27f84c152e5d1df502f6c2ea6a1f3 *R/Sequoia_Main.R
4b53d613b4be7d080e2e8ac1e319cbb6 *R/Simulate.R
00ac543c5f0661910768a337dd1bc5b3 *R/Utils.R
999e27f55f89f0c124075a0bd58c8be3 *R/Utils_hermaphrodites.R
e0324eaa5f7fc6fdeafcd25cbaa7f4ac *R/WriteToFiles.R
7518b54e19ecb3ca46c97bd1522b8e66 *R/getAssignable.R
1c928a07aab5854948ddd213fff94899 *R/zzz.R
69185b9edfdb2556508c21fea80b9a5a *build/vignette.rds
9f320e2db7e11dd8d4b3f04f3de00127 *cleanup
242b04da235395d8328b75e10166584d *cleanup.win
28d34d8723574a7a896baffb11926cc3 *data/Inherit.RData
7537c5b46726a88b4f7dc1061e161d0f *data/LH_HSg5.txt
6826c594710d5fb2aebbdcab62fa2642 *data/Ped_HSg5.txt
be0e470225dd9cd09da773ef5bfe5eb8 *data/Ped_griffin.txt
b1306eea1fa019638a66214f2e951e1e *data/SeqOUT_griffin.RData
50bf7e2cc9633968c27a74c68f7f0d5f *data/SimGeno_example.RData
b08b6d462043a875a506a28eb7e3ea42 *inst/CITATION
1d0b1a437bbd28d71ea6034e7c71e138 *inst/Fortran/Sequoia.f90
91980f1c38e64559748eec4456e3aa13 *inst/doc/AgePriors.R
8ba26e85dc20a128751c998b304afd8e *inst/doc/AgePriors.Rmd
7525805124d07976b0dc0ccd4bfe9ee6 *inst/doc/AgePriors.html
8cad5f91f37f9a00910c45a70bf0e4c0 *inst/doc/sequoia.R
f41d5dfd138d6bc0334225b90d2f2d2f *inst/doc/sequoia.Rnw
36a8eb0efdcd76ed967ea3ece865f8d4 *inst/doc/sequoia.pdf
549b1102d45295072bfb550ca9c9a064 *inst/extdata/Inherit.xlsx
b9cb6799ae6d9d2583417c797559eb4a *man/CalcChi2.Rd
151b05db7ad1cce7c83793ed8216b2a8 *man/CalcMaxMismatch.Rd
4735861666c9f74316824ecf27db53d8 *man/CalcOHLLR.Rd
2d806764ac84e6bc9b75a027dbc7bb3b *man/CalcSnpdBoth.Rd
e0055f886f20c7cd9d846d4db2cb4b2a *man/CheckGeno.Rd
3e2faa4dad48e16d9777c84b1c6c4bab *man/CheckLH.Rd
0403b43088ca05f5105e2c0edd0a815f *man/ComparePairs.Rd
e6635d51f28f66530e9ba719db22bd1e *man/DoErrors.Rd
703655701394a67fb162813099f7457e *man/DuplicateCheck.Rd
f73d013b46682c6055e679ca8241a9c4 *man/DyadCompare.Rd
5942543d7e09fa0393b15788ef17bd27 *man/ErrToM.Rd
acb926d743d519a378d91c9e41000d85 *man/EstConf.Rd
cc28631f1cffb822147e676def65f5c0 *man/EstErr.Rd
36030785055feec92d20a504b681fb9d *man/FindFamilies.Rd
4b8fcc4befa2ef107dea739d7cd0c31f *man/GenoConvert.Rd
9c0ee54e410c1ffc845c7a4236f83526 *man/GetMaybeRel.Rd
de94aa5163ba4cf3a6be41f36782c24e *man/GetRelCat.Rd
bd911ae0f45ce56c0a7afb9bf02ffcc3 *man/Inherit.Rd
d9349c2ea8a8a46e5e74a6359926f090 *man/LHConvert.Rd
2e29c814257df910e433797c7e249ac1 *man/LH_HSg5.Rd
5567debc987a7ffd6e1b9428dd2001bf *man/MakeAgePrior.Rd
2c3348f5313851e2405cc9867394f4bc *man/MergeFill.Rd
b1228ba86129ea7b4abd54b4ce17d7bb *man/MkGenoErrors.Rd
711c67c8eb787ace0ba84a03d334da08 *man/PedCompare.Rd
2b64446e8b62c4a35c7a238a16511e4f *man/PedPolish.Rd
37214da74cef7a733239001a7dd98ee3 *man/PedStripFID.Rd
d58a1a282a34e3ea87267cb273a4ae7b *man/Ped_HSg5.Rd
89c001aaf5b3a181f956e98de5d7829c *man/Ped_griffin.Rd
f8347ec57e783bc3b47443863d3456be *man/PlotAgePrior.Rd
4d8b827ecba06f3d3362e1c1787b74af *man/SeqOUT_griffin.Rd
50b3a5bf9f1580842e0667ecc52e67d5 *man/SeqParSib.Rd
f4071d05b0e3aacd989a253471c252d3 *man/SeqPrep.Rd
6cfc807c74845fa2526cbf675d9748fc *man/SibMatch.Rd
0e6eaaf7ae2909c1b3d0a8626b9b9af1 *man/SimGeno.Rd
c7a3274ee883ac6f57bf9f775db8dc32 *man/SimGeno_example.Rd
ad3657e4a150d909a0f9eb6f20d8dd41 *man/SnpStats.Rd
a42505995729d5bfc6a7e688ac1db30b *man/SummarySeq.Rd
0ade4e6072b98e7191c1d61383eb1fc7 *man/Vcomp.Rd
29ae53b88775088694b2415a9907b85a *man/getAssignCat.Rd
27bb14d34cb1a499e8c16173a26a87ce *man/getGenerations.Rd
3bc35d14ec7b93344537541ea82bc28c *man/orderLH.Rd
6d769910864d90f1186c4ce52ba5a5a7 *man/plot.seq.Rd
75afb034897c49682a2d1e4e57ec036d *man/rc.Rd
3eb2d588702a41c1194b07a95cf143ed *man/sequoia.Rd
743f7b0d8ec843b54756f49abc1ee74c *man/writeColumns.Rd
0844d79425600b875770845cff2a3c05 *man/writeSeq.Rd
79b73d57fd6a8a3b04c75520d4a535e2 *src/Sequoia.f90
5fc9957bc03a0c6887ff0e4ab91a4ad4 *src/SimGenoErrors.f90
b29e5870f4a2d8d94e43f7793a3aa51c *src/init.c
9574a94124441e2e03adbf553c64c542 *src/sequoia-win.def
8ba26e85dc20a128751c998b304afd8e *vignettes/AgePriors.Rmd
639dd8d089f9836876d15b7f07073435 *vignettes/figs/APDiscrete-1.pdf
f93266dec29cfbfa3d16ba79cf1dbce2 *vignettes/figs/APDiscrete-1.png
4a7f8184ad23c0e7fcbbbbf7f9996e03 *vignettes/figs/APMaxPO-1.pdf
b1a3ddd2e95a9252c52d2a8e3802f21a *vignettes/figs/APMaxPO-1.png
b4a78b8a76086c0c6323c160cdc94d52 *vignettes/figs/APall-1.pdf
d83034cd9500da2aaa2e2128576cc2f3 *vignettes/figs/APall-1.png
9b09842dbaddda9680507d5f47f86003 *vignettes/figs/PedCompare_piechart.png
8b1ecbea2c21f2f2e300b693612bc549 *vignettes/figs/SimNoSire-1.pdf
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ee1a33eb23e66e6caa6be6a844f0ca1e *vignettes/figs/SimNoSire-2.pdf
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f728ac79a32e4a5dfb21fe5edcda7a2e *vignettes/figs/SimNoSire-3.pdf
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243562d04e497df98ddbf077a5595bae *vignettes/figs/SummarySeq_deer.pdf
b7357eb30b92ccf4a5d3f2e41a4b435f *vignettes/figs/SummarySeq_deer_sibships.pdf
e5c200f3fa214cf7c94090cf7ec35546 *vignettes/figs/agepriors_pipeline.pdf
f9e7d8ed26002e8f79ad81e1a16f5994 *vignettes/figs/agepriors_pipeline.png
876162da035bafd4060e6ccacc6cda9a *vignettes/figs/griffinAPxtra-1.pdf
c0f0aac28e6cb52286900ef55093f392 *vignettes/figs/griffinAPxtra-1.png
2ff022f59aad8f593e0bd59df980ea5b *vignettes/figs/griffinSmoothFlatten-1.pdf
8aa36187eacc3ca2af36dcdf5bbea321 *vignettes/figs/griffinSmoothFlatten-1.png
52c338cba8bee318826bce4cdc4a1b21 *vignettes/figs/griffin_APxtra-1.pdf
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e8cea9f26b773dd45f50afdc2309ac65 *vignettes/figs/plotFlattenNW-1.pdf
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42ef428d450d3702d07bfc0958283699 *vignettes/figs/plot_Err3_2.pdf
fbe3cf2d0110e2a2d65133dae1528049 *vignettes/figs/simNoSirePlot-1.pdf
f801a0545403711005708d03a43ef32d *vignettes/figs/simNoSirePlot-1.png
f41d5dfd138d6bc0334225b90d2f2d2f *vignettes/sequoia.Rnw
