1d148048dbce29671971daa446108a98 *DESCRIPTION
d5d631747763ae40a03f8dd07642ebad *NAMESPACE
3f98c1cc1e4be0180ed5eaaa5c894cee *NEWS.md
e66c29c91216976635010be70fe002aa *R/CalcBYprobs.R
d64cef2393a43c187a893b6bb34a9624 *R/CalcMaxMismatch.R
5329f5c35edda4c075fd84a04ce6a9bf *R/CalcOHLLR.R
765ae8256fe2bdf6e3930d0c548fc180 *R/CalcPairLL.R
b0b782046eebe53c4b18af4dcb9abe9c *R/CalcRped.R
ff4abddde1495e071caaca63bd3d8e19 *R/CheckGeno.R
feb8f345542714a1e2e76e87a4f5ef6e *R/CheckLifeHist.R
a23be12fc55225f2255bed25753f0e12 *R/ComparePairs.R
91424cb127ac4a58b80a93322bb499fe *R/ComparePeds.R
87a5e3ab27b93c0915ba25c95d503a36 *R/ConfProb.R
07eb13f4833841eeb61b00684a920d8e *R/CountGenerations.R
216a03f42194b5e1f8a7d9fab6aaa1fa *R/Data_documentation.R
6b23595e3b1a5e852e8d60cb091ee70f *R/DuplicateCheck.R
adf93c04e33c51b9cfb4c42f9a2c498b *R/ErrToM.R
36147bb30d8daab65ae3db083b9a42cf *R/FindFamilies.R
45dd851b2f893d394809e9299dcaea5a *R/GenoConvert.R
14ed6363a7a001e2a92bad0e28bf1510 *R/GetMaybeRel.R
39c70ce01655025f0e1ef2b9ebcbff64 *R/MkAgePrior.R
41e8d9dfc88293168d21446f4ac99eac *R/PedPolish.R
77d5ff31cd4fe321ab9db546d73724aa *R/PedToNum.R
be55b8ee16d38b25690a8bba42069c73 *R/PlotAgePrior.R
1ab0b030da02fc2fa7683ca7b5b68591 *R/PlotPairLL.R
d69e21da6cba5031cca109c255c62d2f *R/PlotPedComp.R
4134cd5a6e81db2b6e915c99c52d60a0 *R/Prepare.R
7b6efe9c7b8eedd91785d7ae4da3641c *R/RelPlot.R
aafc81c3a211ee75861d8c4aa98223f2 *R/SNPstats.R
7c9f92160925012f02fc5037e860ef12 *R/SeqListSummary.R
ff7a49d29e17caf3c7842127acb4f9cf *R/Sequoia_F90wrappers.R
0d4e7abce1cdd0aebe8fe50c12e47287 *R/Sequoia_Main.R
07225503829a01618129aaf61ff2164c *R/Simulate.R
d3f0b853c6b91d6b4f9838c8a34c2176 *R/Utils.R
bc6c4aa125042db3ad021f7d0fbd7fea *R/WriteToFiles.R
b1977da3685f2de63fb2de3cb370cb88 *R/getAssignable.R
3b643fe983767d48264c6725fdf13d75 *R/getRelM.R
1c928a07aab5854948ddd213fff94899 *R/zzz.R
84f91f05c3edf4557f0d898bd2b66323 *build/vignette.rds
9f320e2db7e11dd8d4b3f04f3de00127 *cleanup
242b04da235395d8328b75e10166584d *cleanup.win
9cfb11c8e7f6f5675d144e7766cabd60 *data/FieldMums_griffin.txt
28d34d8723574a7a896baffb11926cc3 *data/Inherit.RData
7537c5b46726a88b4f7dc1061e161d0f *data/LH_HSg5.txt
ed0bd90a964fc6cb076fea2e67a3cce1 *data/LH_griffin.txt
6826c594710d5fb2aebbdcab62fa2642 *data/Ped_HSg5.txt
be0e470225dd9cd09da773ef5bfe5eb8 *data/Ped_griffin.txt
0713eb8d0126c37665348234664489ba *data/SeqOUT_griffin.RData
50bf7e2cc9633968c27a74c68f7f0d5f *data/SimGeno_example.RData
b08b6d462043a875a506a28eb7e3ea42 *inst/CITATION
82af9dfe493a34857e9bd2858dbbb5d3 *inst/doc/PedComp.R
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6aee1936816fc4e7b8436f41eb6eec27 *inst/doc/PedComp.html
7c911b78b30c100c473ce52c6b5e812c *inst/doc/flowchart.pdf
2c81d920bd89b80f651b81515cc27527 *inst/doc/flowchart.pdf.asis
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55b11ce39d89fa21e2c6c8e6f9dae10a *inst/doc/quick_start_example1.rmd
487e09321cbc5c073d5b9aa5778b995c *inst/doc/vignette-age.R
88cdf4df3909d949ae8bc29dcc845a69 *inst/doc/vignette-age.Rmd
0ff8c5bed83d19fbdf351f3b0964e3eb *inst/doc/vignette-age.pdf
831a32faaba428260d717503d8393851 *inst/doc/vignette-main.R
9240920901d81338f1b5e974380b4a61 *inst/doc/vignette-main.Rmd
8d46da876b1fbbfb23c2fd5f3249c03e *inst/doc/vignette-main.pdf
ecbe7375c3dc2684af41d4edf5f16a63 *inst/extdata/Inherit.csv
549b1102d45295072bfb550ca9c9a064 *inst/extdata/Inherit.xlsx
20f03db54b53e5f2b1ee4090459fadd5 *man/CalcBYprobs.Rd
6d2a604ac041a8d1c8de1bc00e2b7078 *man/CalcChi2.Rd
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5296278917c84569dc9cfc5a676c137d *man/CalcMaxMismatch.Rd
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871c0d349d22bbff371db86a941f9ae1 *man/CalcPairLL.Rd
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b5b8cb97747a29a4f72803f0d9252af4 *man/CheckAP.Rd
646bdc9e4478532e3009dd685b3b648d *man/CheckGeno.Rd
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212e8dac984546d105d0666fd0e5f8e7 *man/CheckParams.Rd
107b43a5bef863f2ceb8cfcb6b34ef88 *man/ComparePairs.Rd
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1ebea8ce6d583596514a94bea20b540e *man/DoErrors.Rd
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e8f4436ec7569f457983cf6689f69f7f *man/DyadCompare.Rd
afae8b9c1004c3a0a0ace60b1607da07 *man/ErrToM.Rd
3fb94b414e290e95c23ca139073b1d26 *man/EstConf.Rd
15d95c80f513f741dbd29dfd8d834a18 *man/EstErr.Rd
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9c23f6891c9572503a8d03cb0322a720 *man/FortifyPairs.Rd
3b15c8a9556f206893070a5fe2711a35 *man/GenoConvert.Rd
49db36a0415937f1e8467c7e19b4c77b *man/GetDummifiable.Rd
afde8acf93bab23327779a52645acaef *man/GetLLRAge.Rd
0fe557035a4aebd1307068a66cfce9a7 *man/GetMaybeRel.Rd
2591d1ee77bd02dcffeb02f6db289d45 *man/GetRelA.Rd
6bf2e55befec514e878953ca6c7ed923 *man/GetRelM.Rd
bd911ae0f45ce56c0a7afb9bf02ffcc3 *man/Inherit.Rd
3791788c6a21a47eeae93bb0f113f8cd *man/LHConvert.Rd
42b005ff02f8e87aac7f3c52ff2c6e45 *man/LH_HSg5.Rd
211cde516e405cb0bba7402063e9768a *man/LH_griffin.Rd
9c20415e697411cfd2924f199bac1971 *man/LLRplot.Rd
8d6fa652ce9cb3639f57180b43177f87 *man/MakeAgePrior.Rd
deef5ef29fe78590515baf504b0d00b8 *man/MergeFill.Rd
84cff6ed6f0030f514887f7d79710b4e *man/MkFortParams.Rd
10828bf43cb1f1f067ef880f3d5714a6 *man/MkGenoErrors.Rd
85013947d48040c8e0e19ae8c64db258 *man/NumToID.Rd
c70fb4321f82128caa69832bd823d1c4 *man/ParamToSpecs.Rd
d567a22b51c4e62ac2891ad7cd827e21 *man/PedCompare.Rd
a28669cb37ee12437771f24f4c3f78f1 *man/PedPolish.Rd
2c464389e2edcbe8957818a7a7bc392b *man/PedStripFID.Rd
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7d13793b7f6846705b14dfbab8548072 *man/Ped_HSg5.Rd
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97046fcfba5e91dce3f86243578af5c9 *man/PlotPairLL.Rd
6ac1f2e2dbffa71264f395d6af91fb23 *man/PlotPedComp.Rd
07c2c693066dee8ba4bf369529f9598e *man/PlotRelPairs.Rd
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775d0c0386a39664c1b439b6df5d2f9a *man/SimGeno.Rd
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56f011f47c2adeddc33b249e7739f454 *man/SnpStats.Rd
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23d33bcf74f4634f42fd2cac307139d6 *man/SummarySeq.Rd
0ade4e6072b98e7191c1d61383eb1fc7 *man/Vcomp.Rd
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a510faae02f1e1593aeb4138beaa7db0 *man/getAssignCat.Rd
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f5fd1ba927582f37f851286e379623ec *man/getGenerations.Rd
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75afb034897c49682a2d1e4e57ec036d *man/rc.Rd
2cbf5249401c90bc0e9be56a17a70344 *man/sequoia.Rd
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47141a7b200e3ee1e7480f3efdb9cb0a *man/writeColumns.Rd
0906282e55ca014de0b5c8b9d729b3ee *man/writeSeq.Rd
cdb98e279454a75fd8390b03ff6d3708 *src/Sequoia.f90
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9ac1dc517645104c2e0504130610881c *src/init.c
9574a94124441e2e03adbf553c64c542 *src/sequoia-win.def
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0ec317a94471c9679105156bc4d62cb3 *vignettes/sequoia_refs.bib
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9240920901d81338f1b5e974380b4a61 *vignettes/vignette-main.Rmd
388f09d3a40fb6009f165307cd123e2a *vignettes/vignette-main.html
