23e0889a27721f322c3acb8503786b6f *DESCRIPTION
7cb142d1305e28f5920a9cb83f336cc7 *NAMESPACE
e3f58bb1cc58966582062e62af32f4c3 *NEWS.md
84c5861f949aa813f2d6e335389e9699 *R/CalcBYprobs.R
d64cef2393a43c187a893b6bb34a9624 *R/CalcMaxMismatch.R
a51728cc95ea0a353525d8f99dad7d8d *R/CalcOHLLR.R
0d5b85fdbffdf2175f190421b5b534ef *R/CalcPairLL.R
b0b782046eebe53c4b18af4dcb9abe9c *R/CalcRped.R
99f486486ee99e731f47dd18e94494d5 *R/CheckGeno.R
d6f7fca830b6814d024391a2f731e261 *R/CheckLifeHist.R
e3e6cb079031086d2c1cb88cc0c5236a *R/ComparePairs.R
1a1a565113bd616d8810365c14da3d78 *R/ComparePeds.R
d48549ea70fd3b91a8796562b2b2ed5c *R/ConfProb.R
8e419b4621f5d09f967bed93c1714033 *R/CountGenerations.R
f2f942cf2d44bf293e20ae4d04b936a1 *R/Data_documentation.R
6d12948bb3895b5745c6bae674e954d7 *R/DuplicateCheck.R
adf93c04e33c51b9cfb4c42f9a2c498b *R/ErrToM.R
5b2947b582b6daf527de17bb6b5a6173 *R/FindFamilies.R
369b20c472d9cd62ae898611d7c8cb69 *R/GenoConvert.R
90b17f815fed5dea90cae214d45ecd47 *R/GetMaybeRel.R
6f04c3e8698999ec5e70cb1187af48fc *R/MkAgePrior.R
48f3ae54af3fc939594af92f6c4aa19f *R/PedPolish.R
462d73c73d20cf8b0caf7de52d63064d *R/PedToNum.R
a283bf8503715afb06c8e48059cb651b *R/PlotAgePrior.R
0a1f8544e007e2c2c1a60cca01f7212b *R/PlotPairLL.R
7d5fdfd2de016615178d4fd3c197a2b3 *R/PlotPedComp.R
303e4152cf988440fd848a110137988a *R/Prepare.R
53d5468bf56187d0a0cd7da23d23205c *R/RelPlot.R
1f129f09d6f98976d0d6e2cb4db5c367 *R/SNPstats.R
fbb1b4432a65bc4b791dadd123a687aa *R/SeqListSummary.R
023fa2679d32cd25d40b8fa998c0cf33 *R/Sequoia_F90wrappers.R
c510d397cc1aa85ad5938c7c4866c2e4 *R/Sequoia_Main.R
990371caeb7860d33818ac5e76dfdf3f *R/Simulate.R
353ea7a65d523c1d86a893bd64b767d6 *R/Utils.R
9906c5ebcf123b5ccbf33f70e875a220 *R/WriteToFiles.R
e86f9ad88e48166f377d1c4c9f643606 *R/getAssignable.R
bce5202917be36ba877e03275f75fdf5 *R/getRelM.R
1c928a07aab5854948ddd213fff94899 *R/zzz.R
1bf60f8ad7ed431076980811c6df1037 *build/vignette.rds
9f320e2db7e11dd8d4b3f04f3de00127 *cleanup
242b04da235395d8328b75e10166584d *cleanup.win
c3131e2873511647171a615b50536c95 *data/Conf_griffin.rda
9cfb11c8e7f6f5675d144e7766cabd60 *data/FieldMums_griffin.txt
815e4390d7fb7136bda10f71f8b2b71d *data/Geno_HSg5.rda
55bc799a291450ca5f011b371a69280a *data/Geno_griffin.rda
1c3ef7e0e1588d59592691872303310e *data/Inherit_patterns.RData
7537c5b46726a88b4f7dc1061e161d0f *data/LH_HSg5.txt
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579fe06a71785b5ff9d72a91b208e5e3 *data/MaybeRel_griffin.rda
6826c594710d5fb2aebbdcab62fa2642 *data/Ped_HSg5.txt
be0e470225dd9cd09da773ef5bfe5eb8 *data/Ped_griffin.txt
49e19537f9ce4cca5fd0e06e9a880df1 *data/SeqOUT_HSg5.rda
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50bf7e2cc9633968c27a74c68f7f0d5f *data/SimGeno_example.RData
b08b6d462043a875a506a28eb7e3ea42 *inst/CITATION
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6aeeca4df2f15fed24cd9419d69a21a4 *inst/doc/PedComp.Rmd
6698f5caca607ea7ce5b1f094b456f34 *inst/doc/PedComp.html
7c911b78b30c100c473ce52c6b5e812c *inst/doc/flowchart.pdf
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a3087f1cddff3e316125d78de33ceb74 *inst/doc/quick_start_example1.rmd
3db092319abbc41acd17536ea791424c *inst/doc/vignette-age.R
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16af84cc5443a53f32eda76730b0376c *inst/doc/vignette-main.html
ecbe7375c3dc2684af41d4edf5f16a63 *inst/extdata/Inherit_patterns.csv
549b1102d45295072bfb550ca9c9a064 *inst/extdata/Inherit_patterns.xlsx
07cc7e2561f9945417f1f100c6e900f5 *man/CalcBYprobs.Rd
6d2a604ac041a8d1c8de1bc00e2b7078 *man/CalcChi2.Rd
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2cb945bc78fbb84163f552a98fdebea7 *man/ComparePairs.Rd
2dbabf33c58fbcbbd8bbcc98eacb8fb6 *man/Conf_griffin.Rd
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1ebea8ce6d583596514a94bea20b540e *man/DoErrors.Rd
ea709f2cc54acdda9f319eb0ae9c14ff *man/DuplicateCheck.Rd
904464abb06d2e5ca8dec993dc70d993 *man/DyadCompare.Rd
afae8b9c1004c3a0a0ace60b1607da07 *man/ErrToM.Rd
095c08707420c187d6365f4c0151f819 *man/EstConf.Rd
15d95c80f513f741dbd29dfd8d834a18 *man/EstErr.Rd
bba422e928ef30032bdad711615d9fbd *man/FieldMums_griffin.Rd
8b9d37bdd79c537156cd494d71fa2d1b *man/FindFamilies.Rd
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9c23f6891c9572503a8d03cb0322a720 *man/FortifyPairs.Rd
3b15c8a9556f206893070a5fe2711a35 *man/GenoConvert.Rd
2d1772f7b30087f989c6a68dcd141322 *man/Geno_HSg5.Rd
8f192d6bed4347871a14f5261ec375f1 *man/Geno_griffin.Rd
ee5a74020b6be5f277cb1e665fedd8b9 *man/GetAncestors.Rd
0a48bb82951554d8d94cd4de26e4e209 *man/GetDescendants.Rd
49db36a0415937f1e8467c7e19b4c77b *man/GetDummifiable.Rd
8b4522b719f7a72ebac4bf0a906110e6 *man/GetLLRAge.Rd
28bab4a5eebd0409f9482d5118cb7402 *man/GetMaybeRel.Rd
780a0cdfc81f84a8c59ff19e76500aa4 *man/GetRelA.Rd
848bf410a7cd891a9350e5256b15e44a *man/GetRelM.Rd
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9c20415e697411cfd2924f199bac1971 *man/LLRplot.Rd
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85013947d48040c8e0e19ae8c64db258 *man/NumToID.Rd
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091e9cd82b8e4e149309271a2c449772 *man/PedCompare.Rd
5d8f5985e73659cbca16270300fa5030 *man/PedPolish.Rd
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541ba7a55d5cef88cce65854e396e256 *man/PlotRelPairs.Rd
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6cfc807c74845fa2526cbf675d9748fc *man/SibMatch.Rd
0e12372686d2f4f4c7786ad40f7f3f34 *man/SimGeno.Rd
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90556d1e9fb47a2452f007fbd3414b6f *man/SnpStats.Rd
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0ade4e6072b98e7191c1d61383eb1fc7 *man/Vcomp.Rd
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9f144b808cc58d060e2be9a6afd58104 *man/getAssignCat.Rd
52863123f2df8afa0da2eab7075ec07b *man/getGenerations.Rd
adbe060a0323bf53e221a030e4458dae *man/orderLH.Rd
75afb034897c49682a2d1e4e57ec036d *man/rc.Rd
6410c8f5671725884c9c04ee8c9ebcf7 *man/sequoia.Rd
438eafe7d64114d7b80d19c3a00f34f8 *man/tryCatch.W.E.Rd
47141a7b200e3ee1e7480f3efdb9cb0a *man/writeColumns.Rd
da6fc349959902f48ffe46a79f5a0c36 *man/writeSeq.Rd
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0ce545ed56808e6232058e694760a4a8 *vignettes/SummarySeq_deer_sibships.png
2b470fdce44389ddedb33e1ec55c6967 *vignettes/agedif-AU.png
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0ec317a94471c9679105156bc4d62cb3 *vignettes/sequoia_refs.bib
ec7aa4e9047853f91e959d18bf2f4d45 *vignettes/vignette-age.Rmd
c06ed87d197085030fc487668826fdd2 *vignettes/vignette-main.Rmd
