ab75b4615f194c7e0965c6742868fd3a *DESCRIPTION
887ad6e4d88ec0f6f68df6f39eeff57d *LICENSE
b267af14ab1c9e25cdb352d3402d6150 *NAMESPACE
ff406f9b3dca792fd80d82697db143c1 *R/data.R
d31178560ebff6def96830302cde4ac8 *R/haystack.R
aca2b8457540f3596a3e2933bf00134c *R/haystack_IO.R
f67596d25ca870c8c3e944999a7ba475 *R/haystack_clustering.R
641a8a413ee8a85a46fbb4de60c625ff *R/haystack_clustering_highD.R
6794280daebcd4c6c6170aee7e5e6393 *R/haystack_highD.R
8145bc5deada2e701d9d4d33f6b5c880 *R/haystack_visualization.R
767071877f33f9b71dbc4e4a90148433 *R/s3.R
86e9dcb353e3c558e115112d455e80f3 *R/singleCellHaystack-package.R
fe684aa9d61f286b16a4a38074bd81c0 *R/sparse.R
307b097b766ba5a8921309e5cacb6552 *build/vignette.rds
9b9da6d5a58689495957b71af287381e *data/toy.rda
b3832257bba41bc424c63a6645f149b9 *inst/CITATION
c9a17c2d7d48382ce7d1478909d669ce *inst/doc/a01_toy_example.R
2998f32da4082c9925414d0ab0780a34 *inst/doc/a01_toy_example.Rmd
5abfd8ca584ac66267b37332b71a6a0d *inst/doc/a01_toy_example.html
9c42d203b21aba19b9e53924c3a50a58 *man/dat.expression.Rd
b83ee91ffdf096a9869cc6eb1784979b *man/dat.tsne.Rd
4422945559886109566c0ff55a299476 *man/default_bandwidth.nrd.Rd
c9e843a5d1b4202ed47e8411a569e7cd *man/extract_row_dgRMatrix.Rd
7d218636e1ae4d77ab9b05459d06ac2b *man/extract_row_lgRMatrix.Rd
8e1b4f3c19e0bdda7d1c8a0ec696e8b8 *man/figures/README-example3-1.png
121642898b812137fc7264002e23b28d *man/figures/README-example5-1.png
c055c0019a772ccd4a9bcdb5ff184c97 *man/get_D_KL.Rd
839dd089f1dfb1bfa4372a597ef45bff *man/get_D_KL_highD.Rd
2305dbc9963ef7147615ab957522f868 *man/get_density.Rd
58e7c03c15d03260bd908feef15fec84 *man/get_dist_two_sets.Rd
94f0d8b9a60a3d672fcba87b711f63cd *man/get_euclidean_distance.Rd
6fd8ac3a1836a1c027b6c3c5e009dc88 *man/get_grid_points.Rd
0707c8e35b74122557eaec8db4dca13f *man/get_log_p_D_KL.Rd
be875eb9ad3270cbdda53291e83c4647 *man/get_parameters_haystack.Rd
aad34580f142a214bf2ab224a8402e53 *man/get_reference.Rd
5e59636ba50b0b5cd53951d3fd3fe64d *man/haystack.Rd
e8550a0e1d1aa39a49785c83980c6530 *man/haystack_2D.Rd
61cdf725d830f0d413cf95931a55dade *man/haystack_highD.Rd
12d8e1439e7915977b7162b9d50c4f42 *man/hclust_haystack.Rd
ceb1760ba846a6887011227f81903c1c *man/hclust_haystack_highD.Rd
9076a33c32c1ba3e0042245a997290fa *man/hclust_haystack_raw.Rd
064f5eddd3084acb73d5d43fab9b3aae *man/kde2d_faster.Rd
738be50785620ba2ba918e7407fcd163 *man/kmeans_haystack.Rd
a5a81bba8179a7897e66ae8cb8c5ad0d *man/kmeans_haystack_highD.Rd
af254517b87b84119f1fded85ffcfb10 *man/kmeans_haystack_raw.Rd
9f79a26dd7a228b6c5972b28b4b4cd96 *man/plot_gene_haystack.Rd
ba06b2af7c4edb376e1e853ef636c10f *man/plot_gene_haystack_raw.Rd
6024264a42fd0afaa1f34f1465fb3388 *man/plot_gene_set_haystack.Rd
88e022527a851d4f41f225956d64ce1f *man/plot_gene_set_haystack_raw.Rd
76697a4eac9db58a9466174a75215a5e *man/read_haystack.Rd
c80851b139328fc47a30a9b6f67ea18b *man/show_result_haystack.Rd
f531bd6269404e1169d544208cadd5ff *man/singleCellHaystack-package.Rd
ce612178073f3a745709f72842c78827 *man/write_haystack.Rd
f6b3e6aacd895152a93af5c2052591c0 *tests/testthat.R
175b668fffbf9f8b955db3bc77b61974 *tests/testthat/test-extract_row.R
ac558275a3d588681d94c37a22c2c420 *tests/testthat/test-get_d_kl.R
5d4a08b60d6eb588967bf0774f125a4c *tests/testthat/test-get_parameters_haystack.R
2e5f68063e13b6c7048339e8cae479d4 *tests/testthat/test-haystack.R
d0902811c3244e5fe56736bf0bc1c2ae *tests/testthat/test-haystack_sparse.R
9012df3787a849559ee259444c067bf6 *tests/testthat/test-kde2d_faster.R
2998f32da4082c9925414d0ab0780a34 *vignettes/a01_toy_example.Rmd
93b8a8abb27c08d5bdc2157f93d8b4f8 *vignettes/examples/a02_example_highD_default.Rmd
678f000dd122cf1355f29f742d432f51 *vignettes/examples/a03_example_highD_advanced.Rmd
08b8ce33c7402963ff78adc00d147cd3 *vignettes/examples/a04_example_spatial_transcriptomics.Rmd
e77c39fc1c6b7590b4c8c8d370daeef6 *vignettes/examples/a05_moca_100k.Rmd
843bd350eb801aae126f56aecd1ffdbd *vignettes/examples/a06_example_tsne2D_default.Rmd
aa06f5f50fd9fb922cff95e941a44933 *vignettes/examples/a07_example_tsne2D_advanced.Rmd
907c0d14e31ffc89b410be2af8108a20 *vignettes/examples/figure/plot_dim-1.png
d79ae16fa4b1f869d2a54b84aacdff50 *vignettes/examples/figure/plot_results-1.png
