b58426769a8518c71491644a6a17b912 *DESCRIPTION
92caa773104bd8cc757151730e06bcd8 *LICENSE
665c820e1d39ab955e5ffc3ffdaffed6 *NAMESPACE
d4f7eabaac5aaa60afb344b0e263db15 *NEWS.md
ca2aafef0e36ba22474c6ad384e4eee5 *R/data.R
064fff71ac3f375bade5baa2141c16ba *R/haystack.R
d97f7e8ed5ac78fc0a94a68a249f2d64 *R/haystack_IO.R
b57ea43f591f3351c69bab6b890eae10 *R/haystack_clustering.R
ded433d14045866fdc3072c0d06fa052 *R/haystack_clustering_highD.R
838d91fa1c9c9197260969fb5d661963 *R/haystack_highD.R
fa0ba8aa1aaf77cc0d55596edf1c7671 *R/haystack_visualization.R
dfe3556f8cadf9158130de462e751d95 *R/s3.R
12a9d40009b1750286cfd392bdbf5a9c *R/singleCellHaystack-package.R
b6d915d12c70dde7086f97faf3e6d5c3 *R/sparse.R
c93af5f7ac78ed1d6863bd87d8cb3613 *build/vignette.rds
9b9da6d5a58689495957b71af287381e *data/toy.rda
00e6932b77b431fd610c954b833cf145 *inst/CITATION
717eb908fd0a64267dcabbb9762b2458 *inst/doc/a01_toy_example.R
c9825b53de1dbae9ddab7b153495049a *inst/doc/a01_toy_example.Rmd
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2f362ce11f1ed2df80f2ed24ac88bc87 *man/dat.tsne.Rd
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22fd10caa5c20a12f1da53558bfd5d09 *man/extract_row_lgRMatrix.Rd
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65a55a9c22895de35594fb993bfbfa46 *man/get_D_KL_highD.Rd
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238065f4e27e7c34a6dd490141593c27 *man/get_dist_two_sets.Rd
6dff324b876b6c250052039d21259927 *man/get_euclidean_distance.Rd
929ce105dca84794db329c9f344ffa99 *man/get_grid_points.Rd
18f9ceeff14eb5ba492006b5d632f115 *man/get_log_p_D_KL.Rd
59b88ec18c1e5d26c9757f9dd05982ba *man/get_parameters_haystack.Rd
ab2941e8281c1041ef3eadd725eb8f4e *man/get_reference.Rd
7dad15e846777d9f9ed8a9e14d1ec760 *man/haystack.Rd
6825ff8fac4f22e9bb2f269637a170ec *man/haystack_2D.Rd
6ccc148ca93c8eaac91167f91a156798 *man/haystack_highD.Rd
075ee481cf020193be0ee5cbadb40d72 *man/hclust_haystack.Rd
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8f790519cef1d2a845a91fc8ee33f063 *man/hclust_haystack_raw.Rd
20e46ff86923fdf69367fd16e440279a *man/kde2d_faster.Rd
3f1bb28ce268c688a970dcab45aaaf57 *man/kmeans_haystack.Rd
7794020e34ac5a1310d21aaad83bf835 *man/kmeans_haystack_highD.Rd
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8e2e27c9c319aad07d56f702e77f21dd *man/plot_gene_set_haystack.Rd
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a6131b24bcb8f4d73c33a4d2f118f7a0 *tests/testthat.R
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d82226249fef51d9c7a1e665dca9f740 *tests/testthat/test-haystack_sparse.R
36f247664ea0fe9101586bb376e0f92d *tests/testthat/test-kde2d_faster.R
c9825b53de1dbae9ddab7b153495049a *vignettes/a01_toy_example.Rmd
1a8d08a6546429e75f1fee4131d3beb3 *vignettes/examples/a02_example_highD_default.Rmd
615436de905b30d24e04e850e1da5dce *vignettes/examples/a03_example_highD_advanced.Rmd
67f4e0842ce2848b2528d47d94803bbe *vignettes/examples/a04_example_spatial_transcriptomics.Rmd
4975b87e0a2cb42184ddf0f317aa6166 *vignettes/examples/a05_moca_100k.Rmd
5e654b9c9cc6057a12220134831896a1 *vignettes/examples/a06_example_tsne2D_default.Rmd
138ced410e631c501c357f75e692795d *vignettes/examples/a07_example_tsne2D_advanced.Rmd
907c0d14e31ffc89b410be2af8108a20 *vignettes/examples/figure/plot_dim-1.png
d79ae16fa4b1f869d2a54b84aacdff50 *vignettes/examples/figure/plot_results-1.png
