5d1a5ab7f6137bfbe0a5d569c733eebb *DESCRIPTION
bc490320565120e6bf1cb3ed1aeea0aa *LICENSE
e788e82a4070582e0396b569a46376c6 *NAMESPACE
b97874d252ce6ba6f04b11c120621cd5 *NEWS.md
7e84d6a5a6c3aaa8c3a5c61903569347 *R/RcppExports.R
a2d9b8cca3799eab3d2311b20ae5651e *R/STList.R
81dfcd07d58a6f615d78c375bfa89966 *R/STclust.R
d33bffbbb53d4cc60fc4be1db87c3f4b *R/STdiff.R
fd2b696118f60c9a6eaa9759b60df85d *R/STdiff_volcano.R
85416e8fc303b716fdf934a788865ce5 *R/STenrich.R
7ac9c288465883bff1f3c8c1cc8da78a *R/STgradient.R
95340630dddc143862527dca2ab65b26 *R/SThet.R
cb8f2f08e5910b289c79681ecd5f0d98 *R/SThet_invdist_test.R
e9c95e898dd183756f291ebf5b4d889b *R/STplot.R
d38da8c90288c017c8fdbfb53ff9434d *R/STplot_interpolation.R
4a9b5829ce77817765553183e4d9eba5 *R/classDefinitions.R
74d974c571dfc4420303b6f52b388ae9 *R/compare_SThet.R
4bce3175f4d766d2f5e80b59eb6350f4 *R/detect_input.R
696dc226086ff3eb7ae35fa8cdb37c93 *R/distribution_plots.R
1b89a40a8236c757042c6685dfcb3479 *R/filter_data.R
5f5f83d27d20ceeebee0005417afe984 *R/gene_interpolation.R
8884a436ceda09ea7d1605208c1afcff *R/globals.R
7e4aeef1359c34cd7f054f22578e627c *R/import_smi.R
d6964a71e49e2ac377db3ae8d6a72ba2 *R/import_visium.R
8996b6516d03d8353f010278c3bcdf6e *R/import_xenium.R
42a0dafc64a4a5e484545e1840a35746 *R/plot_counts.R
10136828d363603fb87f5d08e137ec11 *R/plot_helpers.R
650e4aae4ff34651ee80c251d373b70b *R/plot_image.R
3766dffb381f387e2fb8beeb41f793e8 *R/plot_spatial_expression.R
1817873a73aa642371246a809e49f312 *R/plot_spatial_geneset.R
2aab1735efdb0fc6c2a7b8ede7121d1f *R/plot_spatial_meta.R
ab61ddca19f0cfae81aaf821439805b3 *R/pseudobulk_samples.R
eaeb667ef82ce7deaf2a592b3f7a7eca *R/seurat_helpers.R
33aaddd50f7a22e175d96038be8dcbb1 *R/summarize_STlist.R
93c0ecacc6af8664e6fe8a89e5911686 *R/transform_data.R
b0cc7c2be7329965c6e249e343f319b7 *R/utils.R
01622e6fdd826f32a0f8ba769a4f9f72 *R/zzz.R
b93a9f88667edb92f8913835b2279e43 *README.md
ed0ce5c5a73d18bbfc63f32e439a0902 *build/vignette.rds
385b91ad7d906f8c8fd07c2846885e3b *inst/COPYRIGHT
abeedbfa07ca9683a3a76085640ebb7e *inst/doc/basic_functions_vignette.R
1aad3a4ad615515ad4b7470d0045e385 *inst/doc/basic_functions_vignette.Rmd
83d3d5be0af3daab5c42cca6b9ed1014 *inst/doc/basic_functions_vignette.html
71464f614392284205b152afdc6c4f72 *inst/err.csv
eb13c4ac82e5a319906ef9e68b280fa7 *man/STclust.Rd
1aa54acbf442ef894b8fd71a1524471b *man/STdiff.Rd
ad1601a242e00ef3bad654e3c996c292 *man/STdiff_volcano.Rd
0775d12c3ecaf150833ef7571d5f9fbf *man/STenrich.Rd
a77fe1d17abcd6e65d9083f5fe4eee47 *man/STgradient.Rd
570bdf6224c1feace5a8ae6c51e79ad8 *man/SThet.Rd
a2d5b096d877428dc170b62f8e6d2560 *man/STlist-class.Rd
2dfb82de4018b947c4b3e2fe1c70cab4 *man/STlist.Rd
770f63e0076bb5565e7d4b2a3588c3db *man/STplot.Rd
e8112e05ea91c5611d116e6b4c69528a *man/STplot_interpolation.Rd
59d4eafa0aa532039f4547746bf4b57f *man/compare_SThet.Rd
aeefb67c6a34a7cbb405478e83318a2e *man/dim-STlist-method.Rd
d277fa1db6bdd6c740ac42d475abf8c0 *man/distribution_plots.Rd
e18dcfa2cb1d7c179bd8f14d2d6e8601 *man/filter_data.Rd
cb4bf6b3079c00b28bb94e0082d49b36 *man/gene_interpolation.Rd
89ed106653060f65a350eddcf5560df6 *man/get_gene_meta.Rd
3074cc20d16681408ed334e2a78c8592 *man/load_images.Rd
042dab7b60e44a2d2333063bd365f946 *man/plot_counts.Rd
cb73332921e367194aac95c33d7fc2a3 *man/plot_image.Rd
3179ac08924a88d1e032d44f42cf33df *man/pseudobulk_dim_plot.Rd
992ed7862f3eaa30668bc5d70b4257bc *man/pseudobulk_heatmap.Rd
025c93464e7b1bd9ad13f603f6596efb *man/pseudobulk_samples.Rd
11b1dce83b2162e05f9c929327124189 *man/show-STlist-method.Rd
ca6e25901762788522242ce3dd83bc4f *man/spatial_metadata.Rd
8297287c56803541a7437f184b314f5d *man/summarize_STlist.Rd
47f7f502a350f6e448014003b6c8e26e *man/summary-STlist-method.Rd
00bf031eb9791cede497bb95d2f8d0ca *man/tissue_names.Rd
96d8b6140460382024deebe348a9ea6b *man/transform_data.Rd
e0ed9aee192626b0a5054912b9b787c2 *src/RcppExports.cpp
32c34e4f7c919eae19e5020377a394f9 *src/seurat_helpers.cpp
11c6a0884a61838a901e1996356f0f1b *src/spatialge_helpers.cpp
30b79d6bb038a1b014ec8ee9229f2f9c *tests/testthat.R
60fd91de80c132540e30f80b60bf2b5a *tests/testthat/test-tests.R
1aad3a4ad615515ad4b7470d0045e385 *vignettes/basic_functions_vignette.Rmd
f9813b23dd4a7784f30292fb12a5ca84 *vignettes/img/dir_structure.png
d749dce733ba15a23bc0c54b3a0e170f *vignettes/img/logo.png
149dcf02c8374b4257e1949d5410d633 *vignettes/img/metadata_file.png
f466689082dab1b4b5506e0d597a39f7 *vignettes/img/spatialGE_workflow_v3.png
94ad0993af094c59c6d0a8025d1c1864 *vignettes/vignette_references.bib
