949a1e35d9606ef58b0d4f9afe6e94e6 *DESCRIPTION
50f32a338868983a04d7df30cf61fa1c *NAMESPACE
71abee37e5f2896ccb3523ff5119fbd0 *NEWS
20b9acf7db104fc7de66a0959ae77fb6 *R/BsplineHaz.R
a5f7386292fdbad2442b799032a3e462 *R/GMRF.R
b4d44beb6d8f9c19da1406309ba831b7 *R/basehazardspec.R
89ea23c86c956a1db7552baf1099cc6e *R/calibratemcmc.R
4b77f5f8dcc1245debd83931f43778c4 *R/circulant.R
6371f1d437aa6952b3ebe40c0eef2aa3 *R/covarianceFunctions.R
162fc622d8e05cfcc4c4517447260338 *R/exponential.R
e2d8a2533d3d885309666a770a5a94b7 *R/gompertz.R
0e8efeaad9698453728278ca8b5346e8 *R/log_posteriors_and_derivatives.R
31535fe1b2a1d60dd3e2c81a60575889 *R/log_posteriors_and_derivatives_SPDE.R
483c5282714a6ce06b1636adbdb03983 *R/log_posteriors_and_derivatives_gridded.R
d9d825156187574b64d276e348acc652 *R/log_posteriors_and_derivatives_polygonal.R
a3d06e15eda9b9082fc889dcc921ba68 *R/makeham.R
95519753d865e4d7b4d21504a69cfd77 *R/maplayers.R
82491f1fbc95deabea5066953c12f6a4 *R/mcmcIterator.R
69e4671257add0599775883f4f22408a *R/mcmcPriors.R
c890ed598f8b9106bc0b40520264568f *R/mcmcProgress.R
327d7577b44eddcf78f9aa2c38b247e0 *R/nonspatial_log_likelihood_and_derivatives.R
2ca6e99ddf0f947963887ed245d78631 *R/outputSummary.R
40c503c0497f3ae9dac5dbc043f4d50b *R/plottingfunctions.R
7ceb2d152ad4c7339aa8e4299f085eb4 *R/postprocessing.R
5ce328b930a48983029fca23e23d25a8 *R/spatgrid.R
db9f5172140e0f81072b3b6f4ed94c4d *R/spatsurv.R
128dc25b323dd5a202f5c22937cdf1dd *R/spatsurvMisc.R
1f2f53e0b5e362d1f05aed9bfe39b3d1 *R/splineFunctions.R
4e9e1b57ef10f6af24c23ec1635c42e0 *R/surv3d.R
b5e05b7bc17ff72e2a80ac3b503a65d1 *R/survsim.R
3f7e4c43073e30c90859d1012e867f08 *R/survspat.R
ebefa25693564f84aa76b059a1dc6929 *R/survspatNS.R
e6a17508e254f4179c302b63c322ee2b *R/tpow.R
e65f69f2bb638bfdaf8c5166c7a7972a *R/txtProgressBar2.R
ca7efda9abc92375543fe49b07d67173 *R/weibull.R
e06b009e38ee7832728d20c7269f88ca *R/zzz.R
f013683e6a3da9b28c69231d1d01b6aa *README.md
59be02ad644df1e91859c21507f2cfd7 *data/fs.rda
cd19024552884269b3de88d1386a636e *data/fstimes.rda
7d182b6183d60167e44293faee557c8f *inst/CITATION
1183a1ff3a5f4e72ec4d9c5afb0a405d *man/B.Rd
97db30ee814571bb468df3a2830600e7 *man/Bspline.construct.Rd
918042d3c1c421056c926f1780e46192 *man/BsplineHaz.Rd
e2be4b15da98e749d575ed27ed4dcc6b *man/CSplot.Rd
fc91b0f0e5a788e66e36848cca375f9f *man/Et_PP.Rd
73bc60de738392235d1faab010f04a77 *man/EvalCov.Rd
c37399b08fdde85c253d4258b2112062 *man/ExponentialCovFct.Rd
8ea5cb0ffa37b88ca0f802a4e4549ec7 *man/FFTgrid.Rd
135065fb59912c35891071a8b6d1592c *man/GammaFromY_SPDE.Rd
a44abdb38676d903077d60954c9e7db6 *man/GammafromY.Rd
acd2cf36ffdcffebee3b67c877f519f7 *man/MCE.Rd
47c9fe19f37d2ab74f4a027bd8ce4107 *man/NonSpatialLogLikelihood_or_gradient.Rd
f10a9dc0872d5770ec3428278a379bf6 *man/QuadApprox.Rd
b559a6cd3ecf86bfe15bbc5e1d9606d3 *man/SPDE.Rd
066ad127e9010f153460157fabd9ad4c *man/SPDEprec.Rd
878d4602a05fd93afb9e4538370648ec *man/SpikedExponentialCovFct.Rd
ec19b3af42fefd8af31dc995f1d618be *man/Summarise.Rd
7c9f0750804afb28eb3eb72804b011d4 *man/YFromGamma_SPDE.Rd
5383e53f085addc548675e0063efb774 *man/YfromGamma.Rd
640782d7f75ac78acc60018049451192 *man/allocate.Rd
727209f0bff8316889e711179fd3dfe3 *man/alpha.Rd
325fb06557723f2387e3d49e18c54001 *man/basehazard.Rd
e5505ea95dceb4a6cfd3291988a172d5 *man/basehazard.basehazardspec.Rd
57495feda9311f0a7d478c3d6d986ede *man/baselinehazard.Rd
e74235d1f96211a6725be1acbb2cfd68 *man/betapriorGauss.Rd
b9dcbe1d9f226781a67c941ade699885 *man/checkSurvivalData.Rd
3e2fbcfe2d04aaf4cd84246d464ffae1 *man/circulant.Rd
2abbad660ac9ab4edc888e462cbf7381 *man/circulant.matrix.Rd
0115f73bd6e3eefa7a5f38fa3d686de9 *man/circulant.numeric.Rd
011e7d3dd7a7a6eaba131e920446415d *man/circulantij.Rd
46e1999c3fb4ed49ac68572fa1a61767 *man/covmodel.Rd
7726a8da318fc662370a978c847e3703 *man/cumbasehazard.Rd
8fd2d178f1294ce6a8e7712e27ba49c0 *man/cumbasehazard.basehazardspec.Rd
9b2efff8a54775a08e11ae5deb5481b3 *man/cumulativeBspline.construct.Rd
f65ffd285fc5dac4117826827fbf3474 *man/density_PP.Rd
3374c1ae7b79e6c7b704eb967fd83dc2 *man/densityquantile.Rd
d791b2572fc60d7b37ed312fc4a28b1b *man/densityquantile.basehazardspec.Rd
1cddf8cb5d2ccaa23cb108f04cce6d84 *man/densityquantile_PP.Rd
e2fe7b9c449691bc8eb3b215bd6e15b9 *man/derivindepGaussianprior.Rd
5a0ca58524155b5a0933957838267a4a *man/distinfo.Rd
986d7b9d6a54c4526890b669a60ca4d9 *man/distinfo.basehazardspec.Rd
5c4db36d2ea358d79f72f6abb07994d1 *man/estimateY.Rd
8f422c252b671c6e29c5fadd7533b62e *man/etapriorGauss.Rd
dd03fa1d41f3d1c1544be2afad9ffc58 *man/exponentialHaz.Rd
5f94b096feb44a94fb33fb638b9b4956 *man/fixedpars.Rd
3ee29fabf18ead11dc28b353cf491417 *man/fixmatrix.Rd
036abdc8122670cec8b3ddcca6e00edb *man/frailtylag1.Rd
49c705ce712e54d11b833f0613877c0d *man/fs.Rd
922ecba8fe82adcb3c02ca51a02e528e *man/fstimes.Rd
775d483cc1eaebc2cf647c48edb3e582 *man/gencens.Rd
817c8fcc6fad96ef96afc9ab3dbe283f *man/getBackground.Rd
f78e629d107c7c94206fb7ca67e62a1b *man/getBbasis.Rd
2f9771c609371799e8569661ebd57d4e *man/getGrid.Rd
24658ea93b0978ca3ad1818a0ff4c27c *man/getOptCellwidth.Rd
2288f8385384fbcdb414da5506302c21 *man/getbb.Rd
026f30b25947d9760b1de738698c877b *man/getcov.Rd
062c3494bf88aa1ffbb5f6357071016a *man/getgrd.Rd
ad2b6fc5fb862a07c4e1ead1ff36a003 *man/getleneta.Rd
0ad418754c2d2cb1cd8e3f1ba216b74f *man/getparranges.Rd
dd0829edfd44d38bfcebbb7e6344a1bd *man/getsurvdata.Rd
39bd3ce445df0642c4d66fb9f1c52792 *man/gompertzHaz.Rd
cd0c77163f74b93f1ed39e1b3e56a363 *man/gradbasehazard.Rd
e0db8ce29eb68b7c823dc48c85929dd2 *man/gradbasehazard.basehazardspec.Rd
87d824ec7ab7dd19b7a33b9d17a2ec0a *man/gradcumbasehazard.Rd
7845e1aaaaf9a666244ab3811f6baecf *man/gradcumbasehazard.basehazardspec.Rd
e82ce3b6296bde7f0e69b796ec1d51bc *man/grid2spdf.Rd
d64753200e0889e87d165941634339de *man/grid2spix.Rd
ad900e3834d584f3bbe7acce54a533d0 *man/grid2spts.Rd
37c780a113b63b2cb487e9a354ae8113 *man/gridY.Rd
0fc7b9669e64306b10c40048a023ded8 *man/gridY_polygonal.Rd
5ecad9f2b206ba678d35d89e883d0261 *man/guess_t.Rd
ee9e8fa6c48bf04e2736320f82f50756 *man/hasNext.Rd
4d1b50980c4e8fe4cf45257384f20bad *man/hasNext.iter.Rd
bfe64913ce1c0fe12feb342b43631008 *man/hazard_PP.Rd
128fb3d3794b48a61f8914363547ef6d *man/hazardexceedance.Rd
5032236c2b9c45ad7e81fffcc9ce5283 *man/hazardpars.Rd
ad0ad8ab9057610a495580a47ac21cd4 *man/hessbasehazard.Rd
a714cd76748557d2c4897abde059d74f *man/hessbasehazard.basehazardspec.Rd
31e73b6fd8de5856da64417d0bdcfda7 *man/hesscumbasehazard.Rd
a812d1fb52026b48ab049fd0c036a70b *man/hesscumbasehazard.basehazardspec.Rd
9fcd97fb82db77ff570e1ce2e1591504 *man/indepGaussianprior.Rd
2d2d4547c478573afc37348dc320b6f5 *man/inference.control.Rd
8638587d65cf4d0c68e845150b8cdcd0 *man/invtransformweibull.Rd
51b98905cdd6de62f8150a22e0264ff8 *man/is.burnin.Rd
509ff74871ce2766f04565eb47494920 *man/is.retain.Rd
7a136a7b55c74a07eed17b7e5874422c *man/iteration.Rd
442aee8c2557db07ec4c1e007e26b83b *man/logPosterior.Rd
8dd3de0bab20bde9bf348c2ca01dfb0a *man/logPosterior_SPDE.Rd
47e3b10739e916b294f801af24644eb1 *man/logPosterior_gridded.Rd
8dbd7e863672e458162a9e96d1d85f02 *man/logPosterior_polygonal.Rd
132ded330ba14a6a5825d05cf9fb2189 *man/loop.mcmc.Rd
554e338541facb05fb1bca9a778fa6f9 *man/makehamHaz.Rd
5f40b4a4bfddbdad72b8218233aa81ce *man/maxlikparamPHsurv.Rd
60f8a2a1e12fc4cb54b2144c2cbe49d2 *man/mcmcLoop.Rd
3ea9e6e8f1d26e0489b8db84f5bd9b4a *man/mcmcPriors.Rd
df00007ad7eba35d0dd5e29d4e337889 *man/mcmcProgressNone.Rd
b64ef3be8ddb5b80be5e7253a7680583 *man/mcmcProgressPrint.Rd
6783335d999a916d83270610947e27d7 *man/mcmcProgressTextBar.Rd
39c87bc48b268a297f55f39d6d11c80e *man/mcmcpars.Rd
75a79260e759e5a4416a30b50ac65328 *man/midpts.Rd
244cd1ddebd6fdf3b53ab66872580aee *man/neighLocs.Rd
b02c133e764612622fcff5932059c305 *man/neighOrder.Rd
ea277f4fd2cd8c6ea71ce8310d07848b *man/nextStep.Rd
b7175c5362e5d01a6468e0f06edac76b *man/omegapriorGauss.Rd
58594350921c2fd9e053a61a20fbf955 *man/plotsurv.Rd
2ea3d5093b3ded0401f3cd744eeef855 *man/polyadd.Rd
763452ae9cbcef38be386edc3bdab724 *man/polymult.Rd
277ddef3d9851930465123ab33a404cb *man/posteriorcov.Rd
71d908c58a7db130da7fbf944326e094 *man/predict.mcmcspatsurv.Rd
7f3c6f9a438de5daec291c8182b83196 *man/print.mcmc.Rd
e662180494b474fef38f974b2de90f30 *man/print.mcmcspatsurv.Rd
9d8fd35825282b06eef52bfaa6ab2c93 *man/print.mlspatsurv.Rd
65902542fe98382c7f9da30db0ac10cc *man/print.textSummary.Rd
6db00f9feff0b22e0397832fdd03104e *man/priorposterior.Rd
f843166bef83122e88393cc3db599e3e *man/proposalVariance.Rd
bc647336c0b908b15696dda48d98f416 *man/proposalVariance_SPDE.Rd
8c58be3eee265348e6080d39a6f97cab *man/proposalVariance_gridded.Rd
23a3d51ceb5a2774efcacf706c329835 *man/proposalVariance_polygonal.Rd
fa36cc97698cdc625b14da235a0dbea0 *man/quantile.mcmcspatsurv.Rd
8625f28b659db5815564ebf783155b77 *man/quantile.mlspatsurv.Rd
838844a3e25727196d3abd4f7c14e16b *man/randompars.Rd
708206231fc91c6bfe0276159ab50b25 *man/reconstruct.bs.Rd
df4b7a877acedfddda2e805b9e22abce *man/resetLoop.Rd
319ce47c350cc0368b4f531b0179fdc9 *man/residuals.mcmcspatsurv.Rd
fbec2c7506c9ab9d21dd995093e33f6f *man/setTxtProgressBar2.Rd
ef0f27ff2f0a1f9aa45785c49d0181bc *man/setupHazard.Rd
f1ba1910c54bd5e400c6442cda33a7a5 *man/setupPrecMatStruct.Rd
cc8bac42242a5d1440863c21dac144a4 *man/showGrid.Rd
298c5258336d2227400c859e7da29aad *man/simsurv.Rd
31c390f33777c5cafb16173d6a208110 *man/spatialpars.Rd
6b0849d2847f6e1fc4147c35350a2560 *man/spatsurv-package.Rd
4fca16949089bbdaa4a42857edd1df23 *man/spatsurvVignette.Rd
b82b6a02a1ac1880af6d6bb106b73a9a *man/spplot1.Rd
d8acb696f9f787ea5b85648a6d97a675 *man/spplot_compare.Rd
1a06fc31a8f5f62863f7c6b109e4ac08 *man/summary.mcmc.Rd
88b8c999c9e5cc75a1724282b78bb35f *man/summary.mcmcspatsurv.Rd
7effc12bb7000b38d08173adf191d570 *man/surv3d.Rd
60b733726988134d24847f8c9656adb5 *man/survival_PP.Rd
200507040b62eda686603fd847651efd *man/survspat.Rd
5b007ecfd1f0cff8bc518f399a247296 *man/survspatNS.Rd
f50321209db3279dbdbeaa9e2028aed4 *man/textSummary.Rd
7165889ace0c41657cb11d2d7bc8e53e *man/tpowHaz.Rd
ae2323c237b97719de68c4112918c20c *man/transformweibull.Rd
f67b043e38f5b9c1d001a4f8a8984503 *man/txtProgressBar2.Rd
126f6781abe6762af7a4b86d37b2969e *man/urlTemplate.Rd
b0dcf79c1b22a6377dca07199414bba3 *man/vcov.mcmcspatsurv.Rd
407427ec6e128491dbcb31c400ca5500 *man/vcov.mlspatsurv.Rd
354d11e482ec8d5507399b88738b3237 *man/weibullHaz.Rd
4a2c445eebb129886b49ebe29fc901dc *tests/iteratorTest.R
2f8d3e6fe9d9169cef1819e829399b06 *tests/test_QuadApprox.R
8cb0c7d03d8e84376c15a4227bed9050 *tests/test_sim_ana.R
87fd454ff5bc11a77e07cec9f0cc0e85 *tests/test_survspat.R
