d01314b4554113e46b79716c964fb44c *DESCRIPTION
8b6d8b47cdad5ba9afcd9f3984ec0404 *NAMESPACE
3fec46a6943cd703d95ac08d65d7042d *NEWS.md
62968788dae5bd13b070b080e9da766a *R/IBDprob.R
216fab45ba68f3658735af6df18053ea *R/RcppExports.R
f204bcb84ac1e312d625a4c99ccfb49f *R/getProbs.R
45c8792d6db26e17714fcf2590233341 *R/statgenIBD.R
14b869ec26ce84dd8539a7c2480f1e50 *R/utils.R
80965cfa9c9a7c4e9b39da210507cdd3 *R/writeFlapjack.R
f2cd2d044d828ad5bf57994f27c9e1e3 *R/zzz.R
e1eb80296939f7f462a136002632db9f *README.md
b163b43f7c2bf6881dcd450d8579d2e5 *build/vignette.rds
f3890ffa98cf5516421a5ed09a2b14c2 *cleanup
255124dec39855b1bd4249e266c975d0 *inst/doc/IBDCalculations.R
64ad522bd07a98258464188f63376814 *inst/doc/IBDCalculations.Rmd
93a193e8a2315366640db312a3b28028 *inst/doc/IBDCalculations.html
748ebe3ce7bf92423860c1f4618ebdee *inst/extdata/SxM/SxM_eval.txt
2038f5a11a102fbabbfb2a9de6807556 *inst/extdata/SxM/SxM_geno.txt
f1fd473d3147b6a0e77ef9f362889e8b *inst/extdata/SxM/SxM_map.txt
8f9a4bee07e098e636eae83ebf731642 *inst/extdata/SxM/SxM_pheno.csv
4dd32524c457c265dd6e7c9570dd5e2c *inst/extdata/multipop/AxB.txt
57838653bfc2b65efdf458a600f93b46 *inst/extdata/multipop/AxC.txt
44e3415b4a9991be9e6a7fcde86cb48f *inst/extdata/multipop/mapfile.txt
bc42a883ecd54025413aa35ed81a6cbb *inst/extdata/popC4S3/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popC4S3/mapfile.txt
c3479bc2fa6e16d64a344c8023b28aac *inst/extdata/popF4/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popF4/mapfile.txt
dbc463c6c279f4dac224202530acaf9b *inst/tinytest/ABC_markers
052fc43efb920258fac8d1ca11b1dcd8 *inst/tinytest/AB_M1_1
0df5fc2c7c0375aa6bd38d1be7a350b0 *inst/tinytest/SxMIBD_map
fcef78b6d42a831bac55bb7f4c4d3405 *inst/tinytest/SxMIBD_markers
5a4f36be0c747570ef32ce7a24e43fb5 *inst/tinytest/test_IBDprob.R
83e85893f2e2d3344ed13942735365cf *inst/tinytest/test_c.R
c086710bf69380d10970b4c70d454470 *inst/tinytest/test_calcIBD.R
cdfdc89bed52fca6e19dc88ad624b9b9 *inst/tinytest/test_getProbs.R
d0081008a5aefd1da45b201584e8e5fc *inst/tinytest/test_writeFlapjack.R
fa3f970df7fe072a78b5c6d3210d9210 *man/c.IBDprob.Rd
951484ba6736a24b220bab5e6a80973f *man/calcIBD.Rd
27eac348f38bbf19ca5437f5dd4abdee *man/getProbs.Rd
600a35f30e3c90235a4a589546bed7a9 *man/plot.IBDprob.Rd
4b768c2eacc6d54769506baea071b9b3 *man/statgenIBD-package.Rd
29b093d83c37111d3dd783e8cd3c12b3 *man/summary.IBDprob.Rd
cabb3a89f1bae90e0f26ac82c7099cee *man/writeFlapjack.Rd
5277175d5655303c920b9ebfb4082368 *src/Makevars
284ad99621778641d35966f098e10ef5 *src/RcppExports.cpp
11bb02c47ffb2c07b4a95ef144fb38f4 *src/calcIBD.cpp
c58b34916c6a36ce1f940feb30829313 *src/general/HMMalgo.cpp
c8a368d16502c9b5f403d52640ed4fcb *src/general/HMMalgo.h
c4bdb5caba1e650ced61494b04c49be5 *src/general/InhVector.cpp
160acd8b6fc16b6a42e8e60d0c8bc521 *src/general/InhVector.h
18f4b020e902addb7d7c61f58cc5038a *src/general/OrdGeno.cpp
155391c2a9cfc89d130c713bdb5bb9e6 *src/general/OrdGeno.h
f5a9d9271a847b3d1a290b529df1cce1 *src/general/TransMatSym2D.cpp
def87bb01fc92121101ccfa5a8ae2986 *src/general/TransMatSym2D.h
051fa8613e617d3f66f7c67c1d0dab99 *src/general/convert.h
fbc03154e1a2ff3346f020b1ea6ee04e *src/general/ibdexcept.cpp
9b8c3cac7ba5863d55b499e821c14f4a *src/general/ibdexcept.h
d812370569c1e0468463c5bd743b2fbe *src/general/matvec.h
ae62e0db7c69860a22082acff3b3a65f *src/general/misc.cpp
1080ebd0b24e50f4794de91abc41b7eb *src/general/misc.h
3dd298056038d4b9c49ce38855a59b75 *src/general/util_genetics.cpp
f17535cb2951fb1d3c8826243a59acca *src/general/util_genetics.h
3b8a9e7a920c0f4b9d2451db99b50809 *src/pedigree/Loc.cpp
47a6a35f50fa3384e3b48ba168976623 *src/pedigree/Loc.h
f386dd4f3d9ec253eb166d9da81d643f *src/pedigree/analysis_fam.cpp
87533005444d274d14fd25569f0e141d *src/pedigree/analysis_fam.h
961a4f50014997ac00c5726eeb7f6199 *src/pedigree/crosses.cpp
c3175b36e1fc4c7475051d7cf1aeb86a *src/pedigree/crosses.h
97408efcbdd2e4bc6105767b7d42ffdd *src/pedigree/mainR.cpp
b0db8af963fb83c9f1275a5228eb4b1e *src/pedigree/mainR.h
ae001ce0f80eba3e936cd6b372b8e8a8 *src/pedigree/markerscore.cpp
99ca407f1edcd7c35794dcda87732a64 *src/pedigree/markerscore.h
6574cca1e683bb9ff5f36a6a8ea803b9 *src/pedigree/popt.cpp
783d828e2930334f916b35f7910f5631 *src/pedigree/popt.h
18aa17f5378feef994564af06c02fc54 *src/pedigree/read_map.cpp
79c7e0e4fbd6282b5a478eab711c1a4e *src/pedigree/read_map.h
17bbc7b0998cac9a0144177c0dc0569f *tests/tinytest.R
64ad522bd07a98258464188f63376814 *vignettes/IBDCalculations.Rmd
1e09f3dc3818740450e8ea25268fefa0 *vignettes/SxM_flapjack.png
c1913a3121bd70ffa79a06e1f0dd6559 *vignettes/bibliography.bib
