6c3d1c579a0d6ccb4bea9c4d22617a75 *DESCRIPTION
5f404d0360d2eece73988e03b8c6fff9 *NAMESPACE
0d71ebe8822996bb5c9c8521c2a12804 *R/AllClass.R
ee2dc6e882782a1dc60a5c44fb31c5be *R/AllGeneric.R
c18cc82eec3698f76db1ceb2dcf157bf *R/LRCUSUM.runlength.R
8fab1e0f3a7f3488bf237d5bd1fd7f3f *R/RcppExports.R
61d58a61ff4500831f3be0fea209afa9 *R/addSeason2formula.R
aa76ffe9106f413caeca6e046077b167 *R/algo_bayes.R
2c46dff7297954e6c2702502b8790c9d *R/algo_call.R
be214ec6475829e4205744ac732af81a *R/algo_cdc.R
c9ca07b4861c4273ff8331615a435e82 *R/algo_cusum.R
2f2f2f54604d1b33742346e1f747f7b9 *R/algo_farrington.R
162ac37df5b177dfe84a932b6f45bc42 *R/algo_glrnb.R
3b039ab8fbd280448ea8ab18cfc842d0 *R/algo_hhh.R
32bbac6af87327df5953f881a46158fb *R/algo_hmm.R
54a7ff43ff4ec43f830a636ef4f38677 *R/algo_outbreakP.R
7e59e5a1fd0c57754e6f123e04014da9 *R/algo_rki.R
e33c4e91fcaec7731e2b9f48b3c0042f *R/algo_rogerson.R
903711545e0576a88a63ccb7379d4489 *R/algo_twins.R
88172bb94a613e34c473ccfb218e1c92 *R/backprojNP.R
828fb0995bee4632ad4423f3d7c61763 *R/boda.R
65eedb802a675c0096f60cc382510f39 *R/bodaDelay.R
2e430d7da51598fc87d26505ef70140c *R/calibration.R
51d65e4566c1924aa1f309a9b911eb96 *R/calibration_null.R
cb17c08401b9b954f0c0a2f0b51f613c *R/catCUSUM.R
09b2e1ae80408fc68c5f9d6b7e87de71 *R/checkDerivatives.R
d9b04a88446501b386e9131b52de7daf *R/clapply.R
2b42bffe99b6544f9cb964972507b606 *R/earsC.R
f09e759e6b523b146a8b43dd38aa2a6a *R/epidata.R
2a1d84a4aefde7ad692ac7515b19b1f7 *R/epidataCS.R
117f82f6e97605811922d7c8644b98c8 *R/epidataCS_aggregate.R
707878ace5fab773424dc0f152f06ddf *R/epidataCS_animate.R
e26b24371b7b7d9242aba01e4e545a8d *R/epidataCS_methods.R
f0d0c989a113377155bbfde8ec9d742a *R/epidataCS_plot.R
f4602b9b53045e2af65a5d2e2f49d59b *R/epidata_animate.R
82fe3b6f16d0ddc0774e52dfdd98433b *R/epidata_plot.R
23456288a99e1860a1cfa1a238f54bce *R/farringtonFlexible.R
dc25e670264995ba857dd2d1252c1686 *R/formatPval.R
3b2b41811955b4d807ee2bf331fee0c0 *R/functionTable.R
9f7ac36012ccb60b1aaed07dd8d69ff1 *R/gd.R
3ca2a3350552438778d972bdf9f4e336 *R/glm_epidataCS.R
5a9797f6921b53e03e4368b3da08c82a *R/gpc.poly-methods.R
a5870a6bcd798a89c834058c40e34bb0 *R/graphs.R
b7e39524c585c78581914f01cf933041 *R/hcl.colors.R
68e06449c428e9d37db2ca802372b6d4 *R/hhh4.R
3bb545ebfc4c2c2bb61e76e443c17214 *R/hhh4_W.R
2e29adf62fc0fb8d436917580b4a2a43 *R/hhh4_W_np.R
0bd5cf8af546c99f5f922c86aee073b2 *R/hhh4_W_powerlaw.R
480fbe593f41518f989aa14c24d847e4 *R/hhh4_calibration.R
d5db2bc0ff166da68078b86c0164d781 *R/hhh4_methods.R
2c611a887502be0a7d961bc00acc2431 *R/hhh4_oneStepAhead.R
492548b99203822305cf061791a05b61 *R/hhh4_plot.R
6278c4cdabc32d203be9aa690f9b7f5e *R/hhh4_simulate.R
55b21f11d1bb9c0a6e597ef4e79f87dc *R/hhh4_simulate_plot.R
06b3c6c38ad2153300e43b14882dc00d *R/hhh4_simulate_scores.R
13a43831746902664c4e2c6507b7c671 *R/intersectPolyCircle.R
d2343ded6d3d37b1f9eff2fc6803de16 *R/isScalar.R
a88f139b35ea30b5c3239aa02fbcef24 *R/isoWeekYear.R
97c5fe6d659c4bc619ddfe61900f13c3 *R/knox.R
9dfa1650025a4ef8cf774960c750b12b *R/ks.plot.unif.R
497c59cfb53217f850f7b74a1ae8ddf1 *R/linelist2sts.R
3475e7006be1293a3ab43ab1cedce63d *R/makeControl.R
54b4e5a8c54769aa9952173f7f4beeec *R/misc_dataProcessing.R
fed4a7a664669d1d97a8b33a3d4680b4 *R/modifyListcall.R
b6e047c499661bd2c2ebcec29f2e23b3 *R/newtonRaphson.R
cd016a09d22003033b998e40b5330365 *R/nowcast.R
f4fce463df5961fba2cc72e9b1480275 *R/options.R
5ac097dcfabce2f22dda5953d31f6813 *R/pairedbinCUSUM.R
81c00325e893d5142480a3c48d7e2236 *R/permutationTest.R
6c338ff8d98ee2728719e86ba5dc6a2a *R/pit.R
7ef218f14a59baa2b79c0fef7d55ec8c *R/plapply.R
ce260573344c25b486aed2d9a7f2cd43 *R/plot_graphics.R
b8f1263487a1a4c00fca3489e54d004b *R/plot_multi.R
09197f8ab423db066604ab32d9417970 *R/plot_xtable.R
5e3bf6ce56e66fd249bc1822ef862d6c *R/qlomax.R
7a591ebe4e8483d6c6098b4cda8302dc *R/scores.R
7a05e6653d764f127813157b00f1f576 *R/sim_HHH.R
d76738240acf75767e17440185a3503a *R/sim_background.R
064d3a73fdd755280188e83d8f858945 *R/sim_pointSource.R
242755258433d782a7fa795806c18e8e *R/spatial_tools.R
5be08cde0378959bd22199f0bffada93 *R/stK.R
586867dd964e87bae8dc1a276c4ef094 *R/stcd.R
8de0e78f0faca944c7bf83299c10e4fa *R/sts.R
51c8d382619c1f5398f98582f1a0cbaa *R/stsBP.R
92650e87fbe44030becb5b45777cd2dd *R/stsNC.R
84c91795860f65013a2e0dcb7348df80 *R/stsNClist_animate.R
5fd0c4f0f72c5dae7ae6063a0bbeb9ed *R/sts_animate.R
2a59fda60422f1505e44059fa2ecf6d0 *R/sts_coerce.R
fb4d9d6ae5eb262ad708ad64c45542f0 *R/sts_creation.R
7a0dcd822c39fd48d144be3b9040479b *R/sts_observation.R
e3fc5471a0507efecbd96b6abf8d69b3 *R/sts_toLatex.R
7f710053aec12b86565240ff7a63372e *R/stsplot_space.R
a6230bb9d9de5a65d2842103aa735893 *R/stsplot_spacetime.R
99a0ff793281139487d8df9bfb1bf829 *R/stsplot_time.R
eb854ba9aab4af6b0778feac5573eecc *R/sysdata.rda
692aa77b1ee65f1269d73aaf2ea9905a *R/testcalls.R
118e51eb7492f76556ab6144e063dadb *R/twinSIR.R
b9b75d193bf403aac831669a2b6c7975 *R/twinSIR_helper.R
0c251c18648b2a2b03eff1a432d49698 *R/twinSIR_intensity.R
4078d9a93052f83fdd9d1dcdab1cd485 *R/twinSIR_methods.R
c3ecdbda8349faefe3c704461669f4af *R/twinSIR_profile.R
2b41220d990241c30de025eadc8227f1 *R/twinSIR_simulation.R
97d942d457546b5fab19a8dfa2954335 *R/twinstim.R
99a158d8566255fac424a2596b78d695 *R/twinstim_epitest.R
0adcd783b43d10036e6e51414f3473d5 *R/twinstim_helper.R
fb609b909569717c962729486d90251e *R/twinstim_iafplot.R
aa5b34374657036b2f51341267c53e9c *R/twinstim_intensity.R
ffadca7dd51c46ce6c96d812a28573cb *R/twinstim_methods.R
dbcdc1caa2e0956c6795dc8d547ee0ec *R/twinstim_siaf.R
d17420003470f57b5b5434a76d720958 *R/twinstim_siaf_gaussian.R
f857b97936f45f25ea99bd63d3ae1a14 *R/twinstim_siaf_polyCub_iso.R
2021f687fdaaf4f57ca0c7413b1a8c96 *R/twinstim_siaf_powerlaw.R
880e4a96a945e4c4445f95e35da845ca *R/twinstim_siaf_powerlawL.R
101fbb1c13c85356b91de13658ea4604 *R/twinstim_siaf_step.R
566883778da5f899d726a19ba39d5257 *R/twinstim_siaf_student.R
ec6fb784fc7586f0dedb97d51f9a5962 *R/twinstim_simulation.R
848e68f6b19e146eb0d6f6fd073de56d *R/twinstim_step.R
bb161cec90325a763709d2e5fa86d7a4 *R/twinstim_tiaf.R
437dce519ca6feae436600f0d1d6432d *R/twinstim_tiaf_exponential.R
c007fba9f8232e06532b1021ade92094 *R/twinstim_tiaf_step.R
e21d2f4625b12923af2f563af1cc824f *R/untie.R
339a9b5872a2d937bb4404e1c4b5472b *R/wrap_univariate.R
bfed3e4106e10197db51a90a6e2f327d *R/zzz.R
a6a3add1572fc483c1d4a6b9bcb893ec *build/partial.rdb
4fadbac37429ca2d95940fe6e259521a *build/vignette.rds
39cd4adbe3c05e3bed5a29e962a30724 *data/MMRcoverageDE.RData
bc57ed2de6c59d625e8ff1dc4bcc534d *data/abattoir.RData
8f11226dce910b95b8ef780e1e087340 *data/campyDE.RData
a5d19dc926e0079295e7bbb807b71183 *data/deleval.RData
74396784d70b77ce6f94f6895118168f *data/fluBYBW.RData
1a1a9a313becf102d191c6c80809df21 *data/foodata.RData
7f00d8ec6194adc54678c9ad5aa684a4 *data/fooepidata.RData
9f87d4b730164ab5cb0c7cbcf1b22670 *data/foofit.RData
154bd5f0caec21664a3b42caf7990582 *data/h1_nrwrp.RData
731c70fffa23b3683391557f47000132 *data/ha.RData
f13e5e8fff2b55cb8df0169792c821eb *data/ha.sts.RData
836e9f6eb2993c4dbf7f4b975d78eb35 *data/hagelloch.RData
d86889b540c46c9b9ea2b42e5dfd3bcc *data/hepatitisA.RData
2aa9e24781d83436f2daaf4db6b788b5 *data/husO104Hosp.RData
355646c5dc107c6eec18360c7d4ff67e *data/imdepi.RData
b2143657132c1d0c6dee57dfa3d62a90 *data/imdepifit.RData
3723c7f472e9782de2011d7885218586 *data/influMen.RData
d7e124e76fd06d35ac3de97cfb3ca0d8 *data/k1.RData
1173ed2c8b616486e274967c6a97ce8f *data/m1.RData
f4ae714001625bb89963fe0e4e2e9a77 *data/m2.RData
b21b89d9b8dab8750e93f944fc30cac1 *data/m3.RData
ec915cd8e2ce14bfd9a8de11bdba92ad *data/m4.RData
728cf151f5516831158588b57d194cd9 *data/m5.RData
b1313db9d37f054c5185cea5fc215ca0 *data/measles.weser.RData
9b38f5dd970f407ef6eb0197c9f428f8 *data/measlesDE.RData
e94e8e0396dc5e5c49abf9d28d4a092b *data/measlesWeserEms.RData
6e88fa261848741a2927e8a0208c176c *data/meningo.age.RData
32eef47d250194f5decca9c2e78126ae *data/momo.RData
0c08f2d5d556db1d91f1c6a3d3125d70 *data/n1.RData
029fff2b44242b6fc032dd4abb839207 *data/n2.RData
9b33e305674dc2bd24e465592a88e4e1 *data/q1_nrwh.RData
f19779c068198733db7f1c95cecc19db *data/q2.RData
8f41ddc82674072f51517b573007112f *data/rotaBB.RData
66338d480d9d6f7541d6b7f5690f1c94 *data/s1.RData
08135e0c5091d08becc0ceb7bb3bb3c4 *data/s2.RData
a24280cb563d545fa1f547b5c0959962 *data/s3.RData
e6867f5f8b49d82d5d56a6ba21bc79bc *data/salmAllOnset.RData
9936b098fc80b9477d114e4f169ba2fb *data/salmHospitalized.RData
177f82cfd139402fd4c68014c65faf46 *data/salmNewport.RData
ebc818bb58803591f7ade0b04d956926 *data/salmonella.agona.RData
f976fafb219fc04b750e0e4117ba054c *data/shadar.RData
c68d5433a3091d766465ac1990b4f697 *data/stsNewport.RData
9b358dfd9210aec26b9017eaa925dbdf *demo/00Index
150489e6ef221568c2edb8ebc24ea661 *demo/biosurvbook.R
9a0f5af9df8d008ee9d5a3e5d2da784f *demo/cost.R
2c2f62f9108861a064c4dabcfae09b79 *demo/fluBYBW.R
bd0e3ff25978f6801efed715049c44f3 *demo/v77i11.R
cfff3dd3f593b008473c88f01328b05a *inst/CITATION
1ca2f7a947f4a3fc6a6f476e66e1b56b *inst/NEWS.Rd
5f8bb2a1c7536b0a2e5d3d9984fb9723 *inst/THANKS
7f1e3893af66b7dc39359827748d7504 *inst/doc/glrnb.R
959d94590efeddc8d255ee1d330c6016 *inst/doc/glrnb.Rnw
5e8567774b1e4f9807946fbf3e35039b *inst/doc/glrnb.pdf
4dc34c5cdff8e50a2746827d1e50c13c *inst/doc/hhh4.R
5ce9bb45a94b620a94c76a25b8a939a1 *inst/doc/hhh4.Rnw
a1d43c6b2a733bc6269f98d10bb95467 *inst/doc/hhh4.pdf
6d866b97db314f37f61199d24f13e269 *inst/doc/hhh4_spacetime.R
e157e06dba435f04ed8ad51d3790397c *inst/doc/hhh4_spacetime.Rnw
624f245361489242867968d359897f67 *inst/doc/hhh4_spacetime.pdf
fe06b714006d430d35b2172ad03b0d27 *inst/doc/monitoringCounts.R
733ec2308167dd712579a8cbd82a0ce4 *inst/doc/monitoringCounts.Rnw
1398d2f677afcfd05a5b77faf86cd300 *inst/doc/monitoringCounts.pdf
e4723096379b7f3398e761e578ae0fe4 *inst/doc/surveillance.R
df303888be863f9a8995fb32d79fff8e *inst/doc/surveillance.Rnw
b71126ad229c8f9aff7de613826063c0 *inst/doc/surveillance.pdf
fe0cf08a224669c084910c5c19f6ff4a *inst/doc/twinSIR.R
0287a987ccc27126a3449cc3c99a0039 *inst/doc/twinSIR.Rnw
db4a19b2a74bffc7b2ac78c79c54630a *inst/doc/twinSIR.pdf
9e81710f4add944902aaa52c72c47281 *inst/doc/twinstim.R
1dfaf487f2efe8ee828ac255cfb21088 *inst/doc/twinstim.Rnw
ae4c7396d8132147a8fff396c5dae339 *inst/doc/twinstim.pdf
01e880f0dcb85b78a1c2be29862d464f *inst/extdata/counts_flu_BYBW.txt
7475135b03ccdf173429ee21b85ca4f8 *inst/extdata/h1_nrwrp.txt
6b1da7976e5a3a83fa4aef34a85fbc3b *inst/extdata/k1.txt
8df0eec6b4370d8fb4474939bd468f75 *inst/extdata/m1.txt
36acb8eadf4088b4df254363e491c93e *inst/extdata/m2.txt
7dcfecd167561244cce073f26508cc65 *inst/extdata/m3.txt
fa4c5c3940fadaa326d71e557c0fa769 *inst/extdata/m4.txt
987da7f7150baa5224cf002ff433cedf *inst/extdata/m5.txt
695773a46addc3189753d7b00bf2cec9 *inst/extdata/n1.txt
d1cfd8d70ad90c0588b5ecab843d6a44 *inst/extdata/n2.txt
7368155ea8525f22a4039c99101fa209 *inst/extdata/neighbourhood_BYBW.txt
57facd5cc2cdaadf18538e6742158b88 *inst/extdata/population_2001-12-31_BYBW.txt
242a2683b7480faf8755ecee88e640f2 *inst/extdata/q1_nrwh.txt
fc7bf5a597d4ddaab36faa6b02f682c5 *inst/extdata/q2.txt
cbe1b1190400f7029f24c761c100fddb *inst/extdata/s1.txt
a8cf8716b32896d394ce1a1528763d2d *inst/extdata/s2.txt
403ff1cd7ad4649f141448b45c244036 *inst/extdata/s3.txt
3cfa159d1f9810e948068fb7831fdc2c *inst/extdata/salmonella.agona.txt
f4730e000238c07501367e4aa0ffd42c *inst/jags/bhpm.bugs
61faaa303d7c5e4e88278dc1026f1463 *inst/shapes/berlin.dbf
6d61b4a4e2ba0197aed611390250f5a8 *inst/shapes/berlin.sbn
4215c8c5fc9aa22fa9277267cbe20746 *inst/shapes/berlin.sbx
57a46753e569f12f8aa48540429444d4 *inst/shapes/berlin.shp
2a29a0fdf04dc5a01a3614ef1096f7e5 *inst/shapes/berlin.shx
aaba0229b93bd6fac056f5081a3e1f35 *inst/shapes/districtsD.RData
f57304050e5f7426989f2dac453b6861 *man/LRCUSUM.runlength.Rd
da3bc824858d6e87e0431999212fd5b9 *man/MMRcoverageDE.Rd
51f04d87f0e9af96027769b730af8abe *man/R0.Rd
d06359352b489a019d950775693eabbc *man/abattoir.Rd
e3726fd4ca78288fe89db6e3a62a08ab *man/addFormattedXAxis.Rd
81ed4b504edd3ff054223a111a598e4b *man/addSeason2formula.Rd
b65347920ac7f8914c5eb4b50a602f79 *man/aggregate.disProg.Rd
85b2aedb900efa03116659050d5a8bec *man/algo.bayes.Rd
f8b6ab06e4d27d44a58be803b578faad *man/algo.call.Rd
6c3d0d8d5d210f92020399259f359fdd *man/algo.cdc.Rd
8a2406825225cbd7b94519dac6ce3820 *man/algo.compare.Rd
5b937a700198de09efdf616cf95ea079 *man/algo.cusum.Rd
af69fa541c543b390986355df2a3ea59 *man/algo.farrington.Rd
ddcf60189b825884760b09415b2f3ab0 *man/algo.farrington.assign.weights.Rd
7bb1f601a5b9c9f0066794189b8b9e17 *man/algo.farrington.fitGLM.Rd
eb25344d041f96e3caa276d0f03cce9c *man/algo.farrington.threshold.Rd
09314090be9985980c742a5abad296cd *man/algo.glrnb.Rd
328f9c86d5ec8b9f03a044ebdde890d5 *man/algo.hhh.Rd
b026ec58b86d0c9cf15262ba13f5149e *man/algo.hhh.grid.Rd
b506a2cf3085ee2494dda7d51d96346c *man/algo.hmm.Rd
ca52ac0d3d2f3029adc029f72fa99ab7 *man/algo.outbreakP.Rd
a03ce41b3d94f8e29938eb451f65e540 *man/algo.quality.Rd
9096bbf5427952ef3c593acac7d664bc *man/algo.rki.Rd
5c38f42e4626e55e202f0dde78124994 *man/algo.rogerson.Rd
f4f6d4df5bf74c1f371a618c27760603 *man/algo.summary.Rd
3a822ba5ef9fe15475276f2055211def *man/algo.twins.Rd
eeaee3c5d0e839ef8d6ef83358ffc575 *man/all.equal.Rd
d3822596ea8c07c0ba128f7f70f2140f *man/animate.Rd
2f342e80d91a6dbe78e7e24537c6d3fd *man/anscombe.residuals.Rd
785860fc36b43605c8b250287cd51081 *man/arlCusum.Rd
c27621642e806325dead2ed992692420 *man/backprojNP.Rd
09fb22575940aa22c3c155be4ea1ffc8 *man/bestCombination.Rd
18d47004e3cbf37b8d21c55f138d4282 *man/boda.Rd
8d16a3531ecbb9f8e3abbb9a664c1236 *man/bodaDelay.Rd
0874769b413334054106966019cf51b9 *man/calibration.Rd
e8c2d163f664e9fb251e4c501cf9f4b9 *man/campyDE.Rd
0ceca7097b23645fc2fb4f8401851836 *man/categoricalCUSUM.Rd
df6455aa6be9dfc476040bf1b9fb999c *man/checkResidualProcess.Rd
5d88a6b64a591a16ff7ae3bb6d0640d9 *man/clapply.Rd
27ef79270ab1c247cc00247a25d96b65 *man/coeflist.Rd
0234cdbffd05f89964e8a55d2359f395 *man/compMatrix.writeTable.Rd
546e42ec52f56113f05ec066084a618e *man/correct53to52.Rd
0e12d409a9eab25d226f71311603d264 *man/create.disProg.Rd
57960afd921a3657b0b48f8ab35b2af5 *man/create.grid.Rd
dda9e5df2c4f4d37b805888fc3c98896 *man/deleval.Rd
c629a963f9544c4a04d5317179f49c89 *man/disProg2sts.Rd
80329fe7efe094d8833545c66af03bae *man/discpoly.Rd
7e557bf7fb1f3dbe5a489e40d68a325c *man/earsC.Rd
128836aedbbfe59b4db9e531034acab0 *man/enlargeData.Rd
3f409b03fa65826c3eb63684fa38f4cc *man/epidata.Rd
24a03ed81abba29642a3c5ee10e092dc *man/epidataCS.Rd
84f262ed2bd30d05529caba023cd9f2f *man/epidataCS_aggregate.Rd
3500bb6ef894b6898e1fae3ca8c45ad4 *man/epidataCS_animate.Rd
13db8505c5a7bcf6b345fb2d17529412 *man/epidataCS_permute.Rd
a9faa4c44614649ff8791acbea8649ac *man/epidataCS_plot.Rd
7bcbfeb759bc26af095d44f5f91b4352 *man/epidataCS_update.Rd
f1c76e4069650e3851d137e0b2c3de15 *man/epidata_animate.Rd
8ca4152e399c901f20b736cf1d9ee5d7 *man/epidata_intersperse.Rd
52ca198e4209900e91aa5ca1bdc62255 *man/epidata_plot.Rd
b1c1a7796cdca7984d7d0a1091f9ab1d *man/epidata_summary.Rd
f660b9a5c95cb8dccef722142b27d61c *man/estimateGLRNbHook.Rd
cd8d6bd836b367c1677fbf4d29a213f1 *man/farringtonFlexible.Rd
08907427c5e4283cebd965c020e5c314 *man/find.kh.Rd
3c3d71c027b25bd7e483d9a1d67bc46b *man/findH.Rd
02198b044625da79eea751c4ee82481f *man/findK.Rd
abe061a58b88854cba95f25bf80ca5f3 *man/fluBYBW.Rd
c5abd4fb24364663f13b98295ac4c169 *man/formatPval.Rd
a09153f7f82a39eafc90268e1ffd8c7c *man/glm_epidataCS.Rd
c8aae79f4385684280d38708bb18c928 *man/ha.Rd
9dc97327372e2156f059d2d7ae8be832 *man/hagelloch.Rd
27b4d245e1d15316d0c8650e798ea38e *man/hcl.colors.Rd
1b75015e5a9c1c5711ffd5374dd584f4 *man/hepatitisA.Rd
bb1679d51f459823b85a8d9e9bf439cc *man/hhh4.Rd
47002640e34e9b0bf744e9e184c77c9f *man/hhh4_W.Rd
f9e8e43bedfa2dfeb84960c46eb1d3f9 *man/hhh4_W_utils.Rd
fdca3cebc9604fb81337f01f95814376 *man/hhh4_formula.Rd
55cb7018dc49e8f0e6e49b6749488d3e *man/hhh4_internals.Rd
0441897313e50b0819a1290956315d63 *man/hhh4_methods.Rd
901e674615fe610807a1fee563d79548 *man/hhh4_plot.Rd
4a4fa202f05de5855e78a9fa2269ade1 *man/hhh4_predict.Rd
62f5c7765bd90e5f1fa36de3f81bca82 *man/hhh4_simulate.Rd
6d351f90d031154312a27a570a2f7434 *man/hhh4_simulate_plot.Rd
abf006951556a14a77138747dbd76f9a *man/hhh4_simulate_scores.Rd
8445683f04a3f6f9298f40fcfa826cad *man/hhh4_update.Rd
8e8e7adee4d02a04f156f2efb3563ec0 *man/hhh4_validation.Rd
cab05dc600878bc5c88de81bc11aaace *man/husO104Hosp.Rd
9214d9944521f0535cb901bba88d544e *man/imdepi.Rd
5d7b82d061f9e9ff4c9d9a40e0b1b78f *man/influMen.Rd
0a357ea0865d70111f7baee6b09d5f7e *man/inside.gpc.poly.Rd
df35457995a21853415e9af9e3ada813 *man/intensityplot.Rd
2b609124840577c36396c103047b97f9 *man/intersectPolyCircle.Rd
9d04dc30b863d2a5961247f906ec770c *man/isScalar.Rd
2f6b29fc3737a7c1483a19dac5a2d546 *man/isoWeekYear.Rd
b6103783e1cfbdf5b185b75c198a473c *man/knox.Rd
679aeaee52f1b1a521cf846ebf1f8ec9 *man/ks.plot.unif.Rd
11a9c37d74443482dfc40621e25a9bee *man/layout.labels.Rd
9bdc53c14ce1a1221c02a710b3298a5d *man/linelist2sts.Rd
9e4c3c24668d0df6db81a71e134f28c9 *man/loglikelihood.Rd
5a5a554ba39f3c30e485537d6dcc92a0 *man/m1.Rd
0c62e6c940083da35c3fb5bb57405b10 *man/magic.dim.Rd
d3cd5027d6855d53fa673df3be1a79a5 *man/make.design.Rd
3460786c170f7d4f1ea700c089a90843 *man/makeControl.Rd
2df1b0730b9b1d167f59f6b3ce7198ec *man/makePlot.Rd
098c1e1193138d967f8f56321dc0b2ff *man/marks.Rd
bef389c9a09e6869c4940dcab30a2f39 *man/meanResponse.Rd
bf6ae45afda840d3bccc78505d4b185a *man/measles.weser.Rd
1945d87b3b66228a58087ca1f06b448e *man/measlesDE.Rd
f4a18ebcd09b7ef61ef79b3a1c6f4037 *man/meningo.age.Rd
a7cae0c53967b9bd0dc517e722f1f82e *man/momo.Rd
bec2e83ec1953e0fe360232444e9467c *man/multiplicity.Rd
5e06f4206765bb00b93758db7df46ec6 *man/multiplicity.Spatial.Rd
0c66f14de0b9d7713536fbc4d621319b *man/nbOrder.Rd
09285be24cb7467c784296e17b812202 *man/nowcast.Rd
1f08d88233045759479cd47ab0069291 *man/pairedbinCUSUM.Rd
897395823d1a865d57bf5c2be2b6bb4d *man/permutationTest.Rd
02e96803eb1a617627ca2eded466a414 *man/pit.Rd
44d63f2f2c26cedc8ad8870cee11f5d3 *man/plapply.Rd
1132b404312195dc55bc1e05c602431f *man/plot.atwins.Rd
f18ea46d3d51816c6f6584d2524e2533 *man/plot.disProg.Rd
6027547080b6c42ce00a138607483726 *man/plot.survRes.Rd
41a6f183cc51a1bcac4a03243cf8ee05 *man/poly2adjmat.Rd
48cdc7c2ff6188011fdd8d2b80c0b1af *man/polyAtBorder.Rd
0c8a9ab7280fcf4d54fb01e3cc3cd035 *man/predict.ah.Rd
8fcfd9d601274b15b0a2f2caa71b218c *man/primeFactors.Rd
747966188aa39b5600347f2d98d32aae *man/print.algoQV.Rd
78f3fabce93aef267799a0528c84ed69 *man/qlomax.Rd
172a18b1405eeafce04a8e024987d8a3 *man/ranef.Rd
b7f7f7300755ff02a161efd8072537be *man/readData.Rd
b46adeab66b32aa5d6b491505fc5e2a3 *man/refvalIdxByDate.Rd
07534c84bffe65b8388cc28214b50a7c *man/residuals.ah.Rd
a2d53834ab2cc44be0e0cdd4d13d836b *man/residualsCT.Rd
537e8a06ee05be6d4020ab4309655171 *man/rotaBB.Rd
8e2f897034179b074dfc583386fa89eb *man/runifdisc.Rd
0ff1d115b9bccf8173562c946911bc56 *man/salmAllOnset.Rd
e64b7bc88b794bafa2676e77ca0618e7 *man/salmHospitalized.Rd
e2e64c60307cc99f0a1c5cd4fef1c086 *man/salmNewport.Rd
88281097eee429efba0848a940880151 *man/salmonella.agona.Rd
13b2a4a417b50c7b4dbb1903dfab6f68 *man/scale.gpc.poly.Rd
b5343cb71a8d2875cf9c73679f3f7277 *man/scores.Rd
acf59e5dabab8a86cb00b1b02f2b5ee8 *man/shadar.Rd
592d20b928f1012b932aaac27d3c1d5c *man/sim.pointSource.Rd
7b234e3fd1d07a268a6e33ffe065f21f *man/sim.seasonalNoise.Rd
f390eae983d4b6046f3432b87fc9d12c *man/simHHH.Rd
019130af35b4f79d4ac62189121d778c *man/stK.Rd
bb60b62230fdc91b7f6ad6a09d9bfc02 *man/stcd.Rd
1541cd96e24e49a63f5af6139ef13b0e *man/sts-class.Rd
df11d292c31aaed59447d20b2c72fc43 *man/stsAggregate.Rd
df53a0b596017c56bb4250406a18caf4 *man/stsBP-class.Rd
d4bc0f219c87e0f18697449e89115793 *man/stsNC-class.Rd
3ce59ca4c559df7119fb5135ea0982ca *man/stsNClist_animate.Rd
77a5306de5c8b7f6ce4679920f3e952e *man/stsNewport.Rd
12f381b8971e40942556064737297adb *man/stsSlots.Rd
bd422b571337f471e6277b897c6251cb *man/stsXtrct.Rd
14d0070b6ce87409feed6d4aa4ef6e3e *man/sts_animate.Rd
ec3c953d05a8f16d4adb6c425c90d3f4 *man/sts_creation.Rd
b07c08895d125ed0a44471254de3a621 *man/sts_observation.Rd
3281c5636e2cbf792caeb084dd52a580 *man/stsplot.Rd
3210146e5e0abf7f228a4bc0023ed1d9 *man/stsplot_space.Rd
53ff4e9c5cb0828295d4691c9eac102f *man/stsplot_spacetime.Rd
78b2ef1aa112ed986abbdcd930fe3136 *man/stsplot_time.Rd
7a51052cfe961bb040b176c81339441b *man/sumNeighbours.Rd
050d76a17390cf53bc8a3c33be00e969 *man/surveillance-package.Rd
f630ff7277dc3556bef3d06b770d8725 *man/surveillance.options.Rd
3df514b4c79a7eadcddd9b32b6045737 *man/test.Rd
347bc3f27c4373396564176975670ee9 *man/testSim.Rd
2a85f9252fe5f3f0ab21e15509ce5a4f *man/toFileDisProg.Rd
08e59c722bf3ff72c4322cba99bf78e9 *man/toLatex.sts.Rd
36449795c2488cb17cea1c5b0cde1435 *man/twinSIR.Rd
7a7c977c0e0b512e2c30b096d05377de *man/twinSIR_cox.Rd
6280e2664c88cf671dc5414ac37799fd *man/twinSIR_exData.Rd
2839801c44661621a9f766ff855bef0f *man/twinSIR_intensityplot.Rd
988f4ba0b08e25e156823c30978f8618 *man/twinSIR_methods.Rd
dc7cada5e58e3a181d27b5f18f4e845e *man/twinSIR_profile.Rd
f03ac9a34d8a4fe346755f37be68dbea *man/twinSIR_simulation.Rd
644d0f403ac061b963f448f3177e2baf *man/twinstim.Rd
1b227521c0ca5f857486ab7df962f4d2 *man/twinstim_epitest.Rd
97cc114c9162d5fa3776ddbf150d77a8 *man/twinstim_iaf.Rd
64af818d69a2d1b67801af21f612d705 *man/twinstim_iafplot.Rd
c1be6580ef6ec47eb4577be7c9b3fb5e *man/twinstim_intensity.Rd
112eb274b4e4c4c8156d98f5d95058b4 *man/twinstim_methods.Rd
30954d87702654fac94fb92a7170e848 *man/twinstim_plot.Rd
deccdbc7fadc8a8ab8f543917de0df87 *man/twinstim_profile.Rd
b855e3b6b307ac0933aa0e1f4e473944 *man/twinstim_siaf.Rd
915638d0d0866d5baa65c760c942e937 *man/twinstim_siaf_simulatePC.Rd
92e68ae63a5f0434ebdd3eda32dae123 *man/twinstim_simulation.Rd
fbe1dba9b0d30afdeda1e42773c3394d *man/twinstim_step.Rd
3977925a2d40feb47561093bd350f57b *man/twinstim_tiaf.Rd
f2c66d064b8d81b3b07c10464c338120 *man/twinstim_update.Rd
6df6bf11745b7358ca3c3d9a3f5ecd13 *man/unionSpatialPolygons.Rd
29cefd90ca41a27173395cbac785a99b *man/untie.Rd
8551613f7522ada65503a8842aa22898 *man/wrap.algo.Rd
ce6f1e7c93f38a57ebc8d23784649d77 *man/xtable.algoQV.Rd
382c0cb7667e12641bbe5fd11a082880 *man/zetaweights.Rd
b3ed706bf0713966f6fa59bc8c79ccbd *src/RcppExports.cpp
b03b552e9456a164ef4b99a3a73f1e24 *src/backproj.cc
ae5151fbc75f1dc0886caff8ce56db88 *src/determineSources.cc
591f53f4e940f79fae3422b45238e815 *src/gsl_wrappers.h
ceb454ba74a54203d4bcb0205598fdf9 *src/init.c
5fc6609f34a21da62930ea7f90fefaeb *src/ks.c
b88cfaeae45fcb3d8c9d4a5e3e2a27ed *src/stcd-assuncaocorrea.cc
c7e10733c5a4a27293f72ae939935163 *src/stcd-assuncaocorrea.h
a84e49b0891032b6966245d928d3ad18 *src/surveillance.c
3d2fd19412d9ebc374e6d3197680ff94 *src/twins.cc
583433b4e099ed0cb8832f36267bb18a *src/twinstim_siaf_polyCub_iso.c
00862f9b1d4e443d92f7a1c1426d2f87 *tests/testthat.R
0a5ff8b81a012b221245d3ed117e00f9 *tests/testthat/test-algo.glrnb.R
60ef91ae1644f77a78421bc167836b0a *tests/testthat/test-bodaDelay.R
65fe94672dc5a141562bf5800b112adf *tests/testthat/test-calibration.R
9492931b3e65b4bbceac4be6222e163e *tests/testthat/test-createLambda.R
220d17007747ef51c8e3d04f04bceee3 *tests/testthat/test-determineSources.R
192d042f92c8f67fa4a4ab3c1153044a *tests/testthat/test-earsc.R
e2415755d81be3201b5565e4a69455cc *tests/testthat/test-farringtonFlexible.R
9815b459b6e7a451cc98e4fedf2d7bbd *tests/testthat/test-formatDate.R
54f7e2d4384b24dafa6f3fb1b42cdf27 *tests/testthat/test-hhh4+algo.hhh.R
b395815d92dd6ad1c112ef1cab023447 *tests/testthat/test-hhh4+derivatives.R
e14fb292c7c8d198cdb4ba419ca1ec0b *tests/testthat/test-hhh4_ARasNE.R
16afff9a2c16f9c280568fdc7ca7ea28 *tests/testthat/test-hhh4_NegBinGrouped.R
96ca6abb7df9823cf14ca582882c5db8 *tests/testthat/test-nbOrder.R
2859de753c985ea8a85bfc1ee268c804 *tests/testthat/test-plapply.R
41cf6811c841d98eedafd5ff1631f1b0 *tests/testthat/test-siafs.R
2a13697789d0d3b4bc37b6b5bb080bec *tests/testthat/test-sts.R
f967f1699eea4d3d2cb1ebdeb2795213 *tests/testthat/test-tiafs.R
8e3f86ab6f83cc1479feb44ef5ca36aa *tests/testthat/test-toLatex.sts.R
48a8bb6c518e33e8fd5c43af73e729fe *tests/testthat/test-twinstim_score.R
959d94590efeddc8d255ee1d330c6016 *vignettes/glrnb.Rnw
b1c985ebb611614fc547c4c9ce227985 *vignettes/hhh4-cache.RData
5ce9bb45a94b620a94c76a25b8a939a1 *vignettes/hhh4.Rnw
71a631c17142aaba9f6efe3c2a848215 *vignettes/hhh4_spacetime-cache.RData
e157e06dba435f04ed8ad51d3790397c *vignettes/hhh4_spacetime.Rnw
43c3b4074388679a849f509aebbc8a7e *vignettes/monitoringCounts-cache/boda.RData
dc51a8fe04b5371505ce0f4bfba469d6 *vignettes/monitoringCounts-cache/boda.covars.RData
e96ace90d8c7da6ca841b64e38c6fb05 *vignettes/monitoringCounts-cache/pMC.RData
4a4e3a07341972e333a16615c1687f1e *vignettes/monitoringCounts-cache/pMarkovChain.RData
b17c5546c383d603c5a9824db248b1d5 *vignettes/monitoringCounts-cache/rlsims-multinom.RData
733ec2308167dd712579a8cbd82a0ce4 *vignettes/monitoringCounts.Rnw
aafa3c727f8d58b7cc14d84c808f3330 *vignettes/monitoringCounts.bib
d6a3abcb25c86e8b5f3308bb2d3a0878 *vignettes/references.bib
3e456dc01a1189e7f6f2005b0cc4bd54 *vignettes/surveillance-cache.RData
65b084cb5e73de92bf39ef4ae57d3cb5 *vignettes/surveillance-hmm.pdf
df303888be863f9a8995fb32d79fff8e *vignettes/surveillance.Rnw
01099bf54aeaf8a031440283443e994a *vignettes/twinSIR-cache.RData
0287a987ccc27126a3449cc3c99a0039 *vignettes/twinSIR.Rnw
a9e735298fdf52f29f601f35d620a373 *vignettes/twinstim-cache.RData
1dfaf487f2efe8ee828ac255cfb21088 *vignettes/twinstim.Rnw
