639e540f302e6854a15dc7cfdf1461d6 *DESCRIPTION
83436a0798071295f53d277455175c5b *NAMESPACE
a090f7117093a38b10441a70e15b4b21 *NEWS.md
111a3c3682985f33afe8b1deee2e2af5 *R/app_config.R
a8193ca00bc2bf136be13bc091b14fd4 *R/app_server.R
67581f9a4bf3ed3c2b47475688682153 *R/app_ui.R
96888f80773a35b7439aebc1cc38b1f0 *R/functions_map.R
b1fe51c35f81a405e5d0b5e3a58fc9de *R/functions_qtl.R
b91a1e44c830055f3ee45cb1461b83d6 *R/functions_upload.R
0c81624e34b340ee96bfe0e1bfa708f0 *R/mod_genes_view.R
c997d49b519067ef5f2ab9086adbcb1f *R/mod_map_view.R
108b8d2429fb97fc75adb2e2d8c7898c *R/mod_qtl_view.R
2cd541fec58484a314369304d9e077bb *R/mod_upload.R
e42d7a51cb51ba1d8356a8ca35021899 *R/run_app.R
7c99020f79640a73378d9c8935fa43d6 *R/utils_helpers.R
5b0d23ed5a1136525d8bb0103cf3b9e9 *README.md
4c003e79ceb69b6d2709ba4981af2cca *build/partial.rdb
619e09c3514536387d445d05fc823889 *inst/WORDLIST
1de0576206b115c46e4f4300c17aafd9 *inst/app.R
97f756b4c78bb6e7f99f080140897652 *inst/app/www/logo_white.png
70ccb9e5589e27c1d8b1c1a92a5afd6f *inst/app/www/viewpoly-flowchart.png
58f8a4e5c3cba64ab9424bd5f46f3cf8 *inst/ext/about.Rmd
7443ff2d510c602e4a2be48a8b87c522 *inst/ext/beta.hat.tsv.gz
78d01b608a54a6cdab912a3e27173a73 *inst/ext/blups.tsv.gz
f02d7eec5d08631e57b87051d23a508f *inst/ext/dosage.tsv.gz
d6f908354a8a2bbeb39aa7d1b6f262f2 *inst/ext/effects.tsv.gz
0d02c4021be39ec680a22aecae68a2e6 *inst/ext/functions4tests.R
a797eaf563c4dc5a5cce555c31798471 *inst/ext/golem-config.yml
250d17ddf0dedd3728cd3f5e4c8b400f *inst/ext/include.html
0b6510142bc4f72db0433c29997f5aef *inst/ext/map.tsv.gz
f5e539105fb93f96a8c03fb600947387 *inst/ext/phases.tsv.gz
717d5ebefc04dc78f384e4ed044601c9 *inst/ext/probs.tsv.gz
580d0c4a5e08dc82d88747b049cac2ba *inst/ext/profile.tsv.gz
445c49025cb75b4553237aa8f603a888 *inst/ext/qtl_info.tsv.gz
0ef76419d1f7f2f8ce81ea5f8e33c122 *inst/ext/selected_mks.tsv.gz
08ca7bda6a0aaec145b1c4ca610b0d96 *inst/ext/viewmap_tetra.rda
3e7d5976d1c86ebb305da9550ff9b22a *inst/ext/viewqtl_tetra.rda
f7cae16072eadba557bc6ea10f636c0a *inst/golem-config.yml
2eef27c387e7aaf57578f7850d09f82f *man/breeding_values.Rd
f80f514b8ecc5321c416cd7dd975b95a *man/calc_homologprob.Rd
1033eb93e730583e1bc8fffb23331ea2 *man/check_viewmap.Rd
d0ebe01913b71710354cd830a634fbbc *man/check_viewpoly.Rd
b2f5a0ff110da91a763d09e09ff8d039 *man/check_viewqtl.Rd
3c0f8895311cf031362b8e5836ab4fcf *man/coord_radar.Rd
25503981f7fa56b96d79b4686b20dc09 *man/data_effects.Rd
5168eb6b7b789357b33445c80462afd9 *man/dist_prob_to_class.Rd
2ffff83ba57708bb4996b90e4529429d *man/draw_map_shiny.Rd
af70ea0ed25a208e7f3f9963a262df99 *man/filter_non_conforming_classes.Rd
7ff9c06ef37ae24f2a3397b2c34aed0b *man/get_LOD.Rd
5cd56d63f50f2a2771d68f7e6c968208 *man/gg_color_hue.Rd
abff300943164d074d213dfdb586f157 *man/imf_h.Rd
ff61e085acbfc48cedb9910893c8fa16 *man/import_data_from_polymapR.Rd
cab6b69f91671280b1aa4a7a260d1f75 *man/import_phased_maplist_from_polymapR.Rd
c8acd47a8f81936ce024c5293d766bfe *man/is.prob.data.Rd
225fb869f83c6a054957548da5e21388 *man/map_summary.Rd
aa8b8f4037c7f67c2e07e5cef1f18c0e *man/mf_h.Rd
850cc6d971376506316093efaaf9a420 *man/mrk_chisq_test.Rd
aaf1b49f59eb63c3655539629034b3bd *man/only_plot_profile.Rd
2a4abf07336a3d5e2d43b91c78a8c7c8 *man/ph_list_to_matrix.Rd
dce3187af8ba56a656005c6b5212dc52 *man/ph_matrix_to_list.Rd
615a00df274fa710da6f4836b32fd284 *man/plot.mappoly.homoprob.Rd
60d7d5b7c8e6a5cd8a0a8cd0acd0ebe1 *man/plot_cm_mb.Rd
685db64f30391844aeec2818245b95d6 *man/plot_effects.Rd
ad8a3fadeaa4d6c9d3e870016303e904 *man/plot_map_list.Rd
9f69078efb370c4548b7d9446228b4c9 *man/plot_one_map.Rd
ccf1e391ea313bd10389646ec399e391 *man/plot_profile.Rd
f555995dbd17ef131403487685c57edf *man/prepare_MAPpoly.Rd
76fa17fb9576971fda7e9363a40d39cb *man/prepare_QTLpoly.Rd
ea64b617ae107199be9b1d62fa86a4db *man/prepare_diaQTL.Rd
387b78fcdb6b9ed678344c607e3b540b *man/prepare_examples.Rd
84e96411f75d74a0ef922517ad80f728 *man/prepare_map.Rd
e3e3c1a0831bef069b2c051dbb174da6 *man/prepare_map_custom_files.Rd
81eae747515bd796842cf81906a9d57a *man/prepare_polymapR.Rd
b761eb65d3d3fe8bd154b8bc206f794e *man/prepare_polyqtlR.Rd
e188abcd9fa5d6b667feb5610ae421cd *man/prepare_qtl_custom_files.Rd
274d618bfe853199a92eded85dd87e9d *man/run_app.Rd
c19b691623782dcc950124da2a084ac5 *man/segreg_poly.Rd
a22693f49f0b39a7c0aec2d1b033e3e6 *man/select_haplo.Rd
d8b195464eddf51f8ff41b4d82f8304b *man/summary_maps.Rd
61ded2efb13cecfb67cbf8fb335bbaa8 *tests/testthat.R
41b807fcc6518776b8d07ca389562179 *tests/testthat/_snaps/tetra_example/effects-bar.svg
e800a2a8fea636e5b29548b85e61fae0 *tests/testthat/_snaps/tetra_example/effects-circle.svg
42b2e861151757fbdd299bdea25e0433 *tests/testthat/_snaps/tetra_example/effects-digenic.svg
e544ebc7cbb9f1cc73d0b4a03466ee87 *tests/testthat/_snaps/tetra_example/linkage-map-draw-names.svg
6e67fb5cea565ba37c70bebe99f57aaa *tests/testthat/_snaps/tetra_example/linkage-map-draw.svg
45c27353b02416ba87185036ad402f7c *tests/testthat/_snaps/tetra_example/plot-map-list.svg
7b601ff97a842458b1093a87f82b9195 *tests/testthat/_snaps/tetra_example/qtl-plot.svg
a15bfe52078567df1c3e0c784e3e3a52 *tests/testthat/test-custom_files.R
30b3e58a3efc26504296601696279275 *tests/testthat/test-golem-recommended.R
77633b2fd7d2e7763466760ccf265bab *tests/testthat/test-tetra_example.R
