d81f8ea40fff9ab551f675236e181d3d *DESCRIPTION
3904bbf7300dcea15c373f93b35e6cb2 *NAMESPACE
2aadf9aa660756476d541d38ee7e5128 *R/AAmass.R
6d80e284364e793ca2969a530638f67a *R/AucRoc.R
beb3e709a2297660a57554f34ce8827c *R/VolcanoPlotW2.R
e5b7b312823743a0926b681741d5d830 *R/cleanListCoNames.R
cbf71009fa00fb95a101e59bde8d7806 *R/combineMultFilterNAimput.R
02b4be7bf287e9b94811fa69c9dce52f *R/convAASeq2mass.R
9d3dcc93a0a7298e5208dff73e268435 *R/corColumnOrder.R
38ba1abf085087aee5a84472d31a7abd *R/countNoOfCommonPeptides.R
c06c7a4a9ae82c5e19326300ad27feb9 *R/extrSpeciesAnnot.R
ff9d0ca0f0e031084dc3c61d8db3dfe5 *R/extractTestingResults.R
95c02c0f5c8d2afa28c17469c5dee7b0 *R/foldChangeArrow2.R
9e1b3281d98d8f3a74b3aad8a6314f7d *R/isolNAneighb.R
25c36d43f7a60dbe4266af3ae59fbb19 *R/massDeFormula.R
b43d16f7c918d8b73b9cb302e25de356 *R/matrixNAinspect.R
489622e2fe8418b0b23222ccb0d0d1a0 *R/matrixNAneighbourImpute.R
9b4ec4a038fd8e92a7f4a02e54750c04 *R/plotROC.R
cdfcd4586637cfcff4dad0519c7980a0 *R/razorNoFilter.R
c7f9369ba9fda353283ca634c3b2a6c2 *R/readFasta2.R
0da4609b8f7481f6601efd167b8aa38c *R/readFragpipeFile.R
c022943de8466a7cd511f09708432c94 *R/readMassChroQFile.R
ad3637983b07275cfe646506bc81747c *R/readMaxQuantFile.R
b6e236ebe73e77de07a1abba53f3d3f8 *R/readMaxQuantPeptides.R
cedace2d951d7284a40b9e4381988a0f *R/readOpenMSFile.R
01f29103bf5eb6cc8258c54b471075ea *R/readProlineFile.R
f69289c0833c205066ee6e4c621c0705 *R/readProtDiscovFile.R
d313a4214fdc89adbb21b0f4fe9058b2 *R/readProtDiscovPeptides.R
30d7bac61e3a2e3be1aa1c2b460cc4b3 *R/readSampleMetaData.R
b6e9ad9d2c4226be3ff24a7e8d773427 *R/readSdrf.R
7cc0e3edab9d3d4dfc2e5f34210af07d *R/readUCSCtable.R
2e95f8298eae2cccf1a32753d69613c3 *R/readUniProtExport.R
de751a2a8ceb294e168565d00de9cc08 *R/removeSampleInList.R
097847aa93ee820cdbafd2d604aae703 *R/replMissingProtNames.R
30f8492c07721a4d2145a6f0515b978a *R/summarizeForROC.R
ed769b82f137634392c6897e96864288 *R/test2grp.R
c8ec172b6a0120ff2010216dc59da928 *R/testRobustToNAimputation.R
9099802e3ee610847bcc6f1fb268cc02 *R/writeFasta2.R
b727bbfc82ef0036430bd06e7c054e35 *build/vignette.rds
1f14b576b5dc6edee6b9497072e2fc64 *inst/doc/wrProteoVignette1.R
7432604b1d2a1069044b60747ee185e9 *inst/doc/wrProteoVignette1.Rmd
21cce826c032dcaf593af6cc5e79b3cd *inst/doc/wrProteoVignette1.html
9165ebb7ac5484034f3fc8e8e7ffc461 *inst/doc/wrProteoVignetteUPS1.R
e94faf258f07833a3f800df22c6ee9b9 *inst/doc/wrProteoVignetteUPS1.Rmd
2cba8d8e638fc372bdc762fbf1f6541b *inst/doc/wrProteoVignetteUPS1.html
5a36dae79d2427c12f424b7b63273b63 *inst/extdata/OpenMS_tiny.csv.gz
fa4ddbca3647427a25de3ca91325b01d *inst/extdata/UCSC_hg38_chr11extr.gtf.gz
972ead93de7417ee0e26aa687f5027e2 *inst/extdata/conta1.fasta.gz
ecce9c03a56859d9d2e35f6a8c7ac3c7 *inst/extdata/deUniProt_hg38chr11extr.tab
fd088c93fc9d4ce11d75cdccb3e51fcf *inst/extdata/exampleProlineABC.csv.gz
ef3a127cb7bd36499883856839d3b989 *inst/extdata/exampleProtDiscov1.txt.gz
3339337d25ff8813704da6921997476e *inst/extdata/parameters.txt.gz
c3cbb00e063cbb974e7f197a076c512d *inst/extdata/peptides_tinyMQ.txt.gz
903b0a68307c4e9541c89ecd39941cfe *inst/extdata/proteinGroups.txt.gz
359b295c744d24f3af38275d661c6e59 *inst/extdata/proteinGroupsMaxQuant1.txt.gz
393f403f2829db9fe4ff28794a423633 *inst/extdata/pxd001819_PD24_Proteins.txt.gz
a91db83677978169a0576c7a4ca3e749 *inst/extdata/pxd001819_PD_InputFiles.txt.gz
cfc7e9ff9779723c2871262ce1ebac39 *inst/extdata/pxd001819_PL.xlsx
5244b011e37cd5fc0a53ec480d01c3b8 *inst/extdata/summary.txt.gz
16d4e227fb74166e15d9ef132aaf9daa *inst/extdata/tinyFragpipe1.tsv.gz
bf47bf530aa4861f0cc3aa05c7420091 *inst/extdata/tinyMC.RData
4ce3b64b9a16c21aebb640440016c6d3 *inst/extdata/tinyPD_allProteins.txt.gz
f7fbb3f3e55715fe24aa4ed2c012b4dc *man/AAmass.Rd
3d03929514e01499b9d5fea11ba1b609 *man/AucROC.Rd
540612acb75d03d907644834b37c406f *man/VolcanoPlotW2.Rd
f3f50ee0caa515a1c3235adbe1bb8881 *man/cleanListCoNames.Rd
e6e9868546ae5201949565707336fa24 *man/combineMultFilterNAimput.Rd
3a3ada0e10c0a28266820259d271152b *man/convAASeq2mass.Rd
4510738347d65d5e482acdfd77a9d9d8 *man/corColumnOrder.Rd
69c09430ebf0d0721deae1886d17e293 *man/countNoOfCommonPeptides.Rd
0eb56799678702b364bfb6324fb87a92 *man/extrSpeciesAnnot.Rd
23476d5c108850509f077ca6acd0d033 *man/extractTestingResults.Rd
b7f7e9a6f00658d335599b1181e1a85f *man/foldChangeArrow2.Rd
52ac445ef8e303109e010d2fedc38d39 *man/isolNAneighb.Rd
e346fea2c6743b904b7c230759349ab3 *man/massDeFormula.Rd
f44c40700f284e7609d952fcd0690f64 *man/matrixNAinspect.Rd
64fbe83d9ec9dad1bc19a77879c29a7d *man/matrixNAneighbourImpute.Rd
ff1d01e333e7d36b2f3ac4846dda28fc *man/plotROC.Rd
0ba20822222822566bd2a8c0084b9ae4 *man/razorNoFilter.Rd
429d683573e32ba41d5e57fce947a5e7 *man/readFasta2.Rd
690d00b32664349b6abeea45695e5555 *man/readFragpipeFile.Rd
8e6d7fe7299ed09347305ea3b7b39174 *man/readMassChroQFile.Rd
008082cf31a3f3e878338d725a51b3d6 *man/readMaxQuantFile.Rd
011db363c3ba01fcbf0a390403114789 *man/readMaxQuantPeptides.Rd
b61b827b1518a1fb1de365f30a08d7a2 *man/readOpenMSFile.Rd
978c1be33cd2442a048a20d83c268237 *man/readProlineFile.Rd
2c07c9d648ac9d71114330e47c20c5d3 *man/readProtDiscovFile.Rd
68a957ce8dd8536be482264832b6db6f *man/readProtDiscovPeptides.Rd
48a3d3c4ba972362db712185529001ef *man/readSampleMetaData.Rd
8c910a97b60568f65ef9cd5d00144b98 *man/readSdrf.Rd
2606a2c281c14bfbaa3a909f1ebec3c3 *man/readUCSCtable.Rd
e8d08ad7a711807ec345db87adfc1589 *man/readUniProtExport.Rd
55c99394886e5b3aae13728cff543406 *man/removeSampleInList.Rd
a62318cd92df81e3063cdc47603388d9 *man/replMissingProtNames.Rd
02cf9ef9b59ff7fd4ea781cca9232d82 *man/summarizeForROC.Rd
0d9ec920c0b46de9fdad4437a371e2b7 *man/test2grp.Rd
34496704d974ca785759ef2dc9cdd332 *man/testRobustToNAimputation.Rd
bd016406fc9b8f673d40ae2469552bdd *man/writeFasta2.Rd
7432604b1d2a1069044b60747ee185e9 *vignettes/wrProteoVignette1.Rmd
e94faf258f07833a3f800df22c6ee9b9 *vignettes/wrProteoVignetteUPS1.Rmd
