671fffbeb0f60145d87f32066fc20e6a *DESCRIPTION
6aae1a45e375fa04d84aa48d4978abe2 *NAMESPACE
24ef8f4c218ad08889d150b80ee59a6a *R/adjust_taxonomies.R
9d8d1a99de8123d36e4b070b3d30b3ad *R/binomial_test.R
61605bac18b1bfbff184c71c3d980b5a *R/blast_command_found.R
050882889fc6be531e96e1c7f4e757fb *R/blast_version.R
95f2dac771ae4dba1661bc9dff23f14d *R/circle.R
c78bf504f5597b5b9155b9ebfc949739 *R/contains_wildcards.R
d72d54dc21bd4c54fc5776684b613a44 *R/coordinates.R
3a59cde8944ed2d0cd2d7b166776999d *R/cor2cov.R
fc0f30921e757731605cf8c60f43d077 *R/dcopula.R
00d4a756374159a9cac0386d7b253a54 *R/ddirmult.R
8a47bbba6472ad2a0158da0f12a7da4c *R/decode_quality_scores.R
34332c6020eb7210bee78a4a52f44471 *R/detection.R
e0e904c3c925a540519a2f4e87891ef1 *R/dissimilarity.R
a3bd7f940ed163e7b11898e56d2a6942 *R/diversity.R
44d3ff1ecca39a86e856db52ff058999 *R/djsdm.R
a784dc506b9a7b7368e6c34dee002150 *R/dmWAIC.R
6e1152c4b4a4795cffb53df2a6b68be4 *R/dmpredict.R
44f20a2568754c2b16ea12feff9e9466 *R/dmreg.R
ad08190193ae0a0a4e7859a45f6458b5 *R/dmvlogis.R
32120a49d87faf9310400baca1877262 *R/expand_taxonomies.R
7269056843a8c02fe50c8b182d1a670d *R/filter_sequences.R
69790705de50be64ca6abc0de6fc4c53 *R/format_reference_database.R
27c6a88300879dae41e549d57d4b5b27 *R/get_consensus_taxonomy.R
a80f8562256f2332ccc3be3b1fcdc0e2 *R/get_taxonomic_level.R
50b233f006576b47a916cdad8817d215 *R/get_taxonomies.IUCN.R
6f807c73bc1e56b9f8e345c24194b899 *R/get_taxonomies.species_binomials.R
eba49340b71471a85bfad42b860df344 *R/isolate_amplicon.R
26f5323df085bbd43a5b143898eab5e6 *R/local_taxa_tool.R
572b69aa1d7469be1ad12af34a96274c *R/merge_pairs.R
1fb747bdfcdccd163f36f3e873b4d59e *R/mlWAIC.R
676883bfb299d22ab1c586071b40b257 *R/mlcoef.R
49e1dfb78d139eaaef2985cc26d40f39 *R/mlcor.R
10eda46a2d8b7433bfc7e079ff3c15f3 *R/mlformat.R
140ad8eea2703d3aa41df3664f6870a5 *R/mlpredict.R
f16485a5a0ab0e33b212936896ad141e *R/mlreg.R
fb95e0331b258caf656859b9f4fc672c *R/normalize.R
3d2d712d418877a2302ec612bb634a1b *R/proportion.R
d0995774f859267af62c240509bb1b1e *R/read.fasta.R
8a3745c2a6201f95b8e940d231a688c8 *R/read.fastq.R
ccd82123897bae8b9a7a91cb077c7d66 *R/reverse_complement.R
4411f73880482a0101ee227979eb6fcf *R/richness.R
3a2d6d28864eb94a9f3792aba28df15f *R/sector.R
e9cadf4afffce91f4baea38f907a35fa *R/singular.detection.R
a29628a79556f2cbaa9fc6b735be7765 *R/singular.proportion.R
f960613a3e9a1b3a5eb246da90120970 *R/softmax.R
4a276bf82f93809dbd58ce90991e5b00 *R/substitute_wildcards.R
d38ee5b5831d682997c2846103f2b2d4 *R/summarize_quality_scores.R
4d228f67d7a29b2409379756ee4a0052 *R/template.R
193d42b76dd54e888879a0a88fb47b7a *R/trim_sequences.R
ef3527188e1afa6cf80bdce569cc545a *R/truncate_and_merge_pairs.R
d5aa11b4e5b4bc6ee2bdacad17cef52c *R/truncate_sequences.length.R
3e74accce994263e799194841c4e4a63 *R/truncate_sequences.probability.R
57b4faba6b8f940b808ab481ede4bd77 *R/truncate_sequences.quality_score.R
d5948eb8efef2c1f3e3c559cd0aed6f1 *R/waic.R
e8167d9be98f552d3415ccf9a2e13d26 *R/write.fasta.R
1683c0f515b6d5021a62bbe1f2dbbb4c *R/write.fastq.R
1407e7af8437764d14e7b47d8fe2d65b *R/zzz.R
2f66bdb92fad3d47af99a3105b744bdd *README.md
98bc76452dffebc018e7c2551abe0007 *inst/CITATION
b78017a6debbbb37761ca8b378a8a381 *inst/extdata/S01F.fastq
5162de14e9cc2b7f59fc36403e49f0e6 *inst/extdata/S01P01.fasta
a1befaeda6203713b3f362a248e125db *inst/extdata/S01P02.fasta
f44143d36e3a9045b84ffeb680859c40 *inst/extdata/S01P03.fasta
8ba9ff3c52e8b70e6afaa20877f4f725 *inst/extdata/S01R.fastq
12fa7823c1e3534375b3fe83722ca68a *inst/extdata/S02F.fastq
9f17f54b36aa081d921f57938f86badf *inst/extdata/S02P01.fasta
c3cc70a5554d128db1ea17ac6c6e82b5 *inst/extdata/S02P02.fasta
47645b73ae0d85ee6ed99d47b703b909 *inst/extdata/S02P03.fasta
c811e9a8dda76243422d2549befb9b7f *inst/extdata/S02R.fastq
b0cb6df12624d497d9bbad53abd9a0b2 *inst/extdata/S03F.fastq
9f1fef723b6943853da2f97945148281 *inst/extdata/S03P01.fasta
9753293c7af08bc6f02dad13bee6cc49 *inst/extdata/S03P02.fasta
02a83e5d455c6c1f1f0794f7e9642b08 *inst/extdata/S03P03.fasta
164d468071dabce8aef74cf2e0d15755 *inst/extdata/S03R.fastq
4116fe953417c96aa6b5f4581096b5ae *inst/extdata/example_blast_database.fasta
90cfa52759fcf97f7aac46ff9001897c *inst/extdata/example_blast_database.fasta.ndb
a6c045b9f619ca27d68cbdc710d3891c *inst/extdata/example_blast_database.fasta.nhr
71f437617cb571ce64fc41c85293148b *inst/extdata/example_blast_database.fasta.nin
b7c16f35ec906eff3e7f22701415997d *inst/extdata/example_blast_database.fasta.not
83c514df785e460d5e11ac071118c9bc *inst/extdata/example_blast_database.fasta.nsq
de1250813f0c7affc6d12dac9d0fb6bb *inst/extdata/example_blast_database.fasta.ntf
b343d3640e56a107008f04630a460498 *inst/extdata/example_blast_database.fasta.nto
db3d0613b7600659a6f31cf230421bfb *inst/extdata/example_common_names.csv
1aa366b99ccef489753e0d0c3a978d16 *inst/extdata/example_local_taxa_list.csv
3fbad5981c4e9b9418a963a451473afc *inst/extdata/example_mvlogistic_data.rds
3570285febc3175bcfa98627fcd3bae6 *inst/extdata/example_query_sequences.csv
c07017c772f70e4519ef2e3949827811 *inst/extdata/example_query_sequences.fasta
7251149a80e7d61497d4ed3204620c65 *inst/extdata/example_query_sequences.fastq
e83c2611ced7672af5acdf0e274d0ad3 *inst/extdata/example_reference_sequences.fasta
25ea8e7baf3fdebe58b936ffad44c25d *inst/extdata/example_regression_data.rds
ec9c5e377134b2c268a384766a04424e *inst/extdata/example_species_binomials.csv
da827bf3e7e29871a827b9e0daa64ce7 *inst/extdata/example_taxonomy.csv
db277eeaf7316333b846b40decb4e85a *inst/extdata/example_taxonomy_edits.csv
a548c1dc941e1759615233d95bc058d6 *inst/intdata/dmreg_h0.stan
24f989853a0f83d1e61fcf8e36774e52 *inst/intdata/dmreg_h1.stan
f7d4fe74c60e393a792a80501bdcb84e *inst/intdata/dmreg_h2.stan
f42e68e799aaef675a4b6c03c4c9e542 *inst/intdata/dmreg_h3.stan
0453186cd42f8c4433d7a018b2428464 *inst/intdata/dmreg_h4.stan
45ffd51566681511ff0076168ebc960d *inst/intdata/mlreg.stan
e216b22dd49e23ee9551422d68292758 *inst/intdata/ulreg.stan
0a530e88afb87443229232dde302eba4 *man/adjust_taxonomies.Rd
4e7ae8ca583f0651067be3e451e3bef2 *man/binomial_test.Rd
a06f98408a32b8381123c1f46727a43e *man/blast_command_found.Rd
9334dbe53536808ca548e5029499df1e *man/blast_version.Rd
f8787557e30363191b53d804403d9442 *man/circle.Rd
e61fd33a1e065c2839dfb039588f4702 *man/contains_wildcards.Rd
4354fbb7eab8ccbce3733ffaf80747ec *man/coordinates.Rd
e7ddcf54405f71fd6e27515445a270bb *man/cor2cov.Rd
cf599fa62e67383c9da39f6129daf2a7 *man/dcopula.Rd
2c076e06a88f76f7530edd080abde08f *man/ddirmult.Rd
f0daf8ef686dbe8e84b89b353ce59f20 *man/decode_quality_scores.Rd
550642eb49dec06b8c627000638219a5 *man/detection.Rd
b8c9edc90d8ed388b48a6285572b76a9 *man/dissimilarity.Rd
5b76ba0d559c6d5707c1348a78e4d9a8 *man/diversity.Rd
029ca1ed98f8c7e55326b213db2598c2 *man/djsdm.Rd
8877b4f1c4b53e6ce7062a9890a7a3eb *man/dmWAIC.Rd
c2b19a9d7821a99a9254c5c6cd22617c *man/dmpredict.Rd
6c42e6a5da64d2d1f344908be6f49591 *man/dmreg.Rd
3366cdc406df0409d23d2f3d188676ea *man/dmvlogis.Rd
713a64450a165a960c4d7e9efb22d454 *man/expand_taxonomies.Rd
ff1c9e1a526ba0b43b2b1a9a1f830367 *man/filter_sequences.Rd
03c17b7d93c7194037546560f483d0b5 *man/format_reference_database.Rd
d82947d642a60e50fe0e3eac88dcfb98 *man/get_consensus_taxonomy.Rd
81425b7ea371e61f5c84d4b3b896c219 *man/get_taxonomic_level.Rd
ef5b4895cf14136a964ee70fb81b93bd *man/get_taxonomies.IUCN.Rd
eb5c95696ef6987cc454405cfc8a49fd *man/get_taxonomies.species_binomials.Rd
e5677d1520129e32a36fea152f6932d3 *man/isolate_amplicon.Rd
31c1f9994019c780b2c2056559f5f717 *man/local_taxa_tool.Rd
94e4188049f96e5960db729de9fa9558 *man/merge_pairs.Rd
ac5fa09f0b98442e39b3505765acfa22 *man/mlWAIC.Rd
e0485247d0761642ed0adbf02a6ff315 *man/mlcoef.Rd
455d3f9f0dd2b54a1d9dac675cdb8920 *man/mlcor.Rd
751459cfdc0de26dee2421fea4e57971 *man/mlformat.Rd
4bf6a241347e6ed3a64d4fa82f16af96 *man/mlpredict.Rd
7fabb86946d2e63c91bb57af587fcc01 *man/mlreg.Rd
333f23422054cb868022ea583d8e87dd *man/normalize.Rd
0417699661c026580eb1aec898cc4a93 *man/proportion.Rd
1d70f326fb7205c31d611b73cf41b862 *man/read.fasta.Rd
cfa0c7fae06986d8882ae1c25840d0f3 *man/read.fastq.Rd
0b19f39f50b663cb9fc8895fbfa787e7 *man/reverse_complement.Rd
2b586911acecfb7207f28f57ae0a61c1 *man/richness.Rd
e4cfa7f86056b39dda70ea0a3c8ca015 *man/sector.Rd
b5872657ee05e18a422caf686e237140 *man/singular.detection.Rd
2dac5f8f51fc6223d5dfee50ec1dc7a9 *man/singular.proportion.Rd
3e93700fe76bf6ad0ca53b26066c4de2 *man/softmax.Rd
8334ba35cd06bc5f286386568437c5c0 *man/substitute_wildcards.Rd
8430ff67d24807c008960afc8e9af403 *man/summarize_quality_scores.Rd
646bd04d50737886fc80457237b09e6c *man/template.Rd
234cec7aaf5124ded3392b895838444b *man/trim_sequences.Rd
bd7605a5c81ce2e9f42213b05698d56e *man/truncate_and_merge_pairs.Rd
d0403ef21e4e78cbd633d6b0853ff369 *man/truncate_sequences.length.Rd
6c4ae740231901cc5a997afdff5dbda3 *man/truncate_sequences.probability.Rd
c5307330b410ce6b2426ce1722cccafc *man/truncate_sequences.quality_score.Rd
9e21bd8780cde64fbf4c6d4e47392d51 *man/waic.Rd
fd4939bb06dc44e597d4b4c54ff4a5fd *man/write.fasta.Rd
f174d65df94c289e002c2e737febf1ee *man/write.fastq.Rd
