c89d672aea25190ce35b8059f1d7e8a4 *DESCRIPTION
4ad27f43f7291ebf43c19a71ca84b75a *LICENSE
b57b3264ae977f5287ae6397e26d275e *NAMESPACE
87647b25a352b9b605df6c303d0df6e2 *NEWS.md
a8aff4f8cc3eb250ac3e15b471b04966 *R/ASRgenomics-package.R
e4135fee8c9339d82a14ee48505c1428 *R/G_inverse.R
1496a6fdf679328b54ae925ccf463ce9 *R/G_matrix.R
47a84d34d5e9fa719753b7223e3e6749 *R/G_predict.R
3afbdb78f73870816e2e40e02362a9db *R/G_tuneup.R
434b0ee4bb9353f342648603423c5fbc *R/H_Inverse.R
e9d56316fe18a4d07c8e6f8914dacd60 *R/H_matrix.R
4acdf0a93c5b7c3a9818b2c61695fa61 *R/Kinship_heatmap.R
01ab759bad59dc46ad28b998fdf4f339 *R/Kinship_pca.R
4a585716f013cac60446bcf91326a3c9 *R/auxiliar.R
e597fdec67b6f98da452f62214cc6b93 *R/check_args.R
645dec453c313d74c8d25171db93badc *R/full2sparse.R
71f8f475b985595b22dc1bbb0817e278 *R/geno_apple.R
9a8b0c569fd0129bd2e7a1d22bbd335e *R/geno_pine655.R
90732a6b41c6db6a5b889bafba3f3e79 *R/geno_pine926.R
be949021d326d4f721f5b38421c7dfda *R/geno_salmon.R
03505ba32b86ea9e2920e33f267ad846 *R/genomic_summaries.R
498c1bedb03eb3b020c0452a14acfd79 *R/kinship_diagnostics.R
d06a2f86a1ee89f73d9aeaf0af886349 *R/match_G2A.R
81f1aec9148d481d463b86b4d9ee8f16 *R/match_kinship2pheno.R
264aaaeb569d69ccf92cecb8409ba13d *R/ped_pine.R
4916c121f22fb315269861b8d72be882 *R/ped_salmon.R
623d825a01a3e894e66830c191be9e25 *R/pheno_apple.R
b7245df080dc8d0a545231c3e02db1d0 *R/pheno_pine.R
6d0099f6f50830ed9ea5a6509003cbe6 *R/pheno_salmon.R
bae583afe1f21b0150919b3529d272b9 *R/qc_filtering.R
47adc2fc7ce8d1db71e8691939a95c93 *R/snp_pca.R
70b63c9d5dd6454491eb22397ca4e59b *R/snp_pruning.R
897051ca5d0059f4574bf7ef93cf7c73 *R/snp_recode.R
b7d41e78933d2d0f54db148434cf3d16 *R/sparse2full.R
203a427521ca06867193ec552111886a *R/synthetic_cross.R
75d7de73e62ec7621cd20c2de234ad0f *README.md
ac9bc378b429e585e165783d4b44a0f7 *data/geno.apple.rda
4b5f9e5777ec9aecd5c8c1c4d735dcd3 *data/geno.pine655.rda
9427d6c79b1fdceb5f74293e00e51fa5 *data/geno.pine926.rda
36239152a1b0d5a93d374a85ab059a56 *data/geno.salmon.rda
7b32d5967fa8935cc7ec43b09a9ee954 *data/ped.pine.rda
af79b29911ea53d8b8c261ad7548ca9c *data/ped.salmon.rda
4f0116e084cfcbde97b2d30b71d16562 *data/pheno.apple.rda
7cef699478b5c6dca64ba222fdce8719 *data/pheno.pine.rda
3c4a80e7f8737229347074256a54f6bd *data/pheno.salmon.rda
b56cf62b5f04e49bff1b2bf8e0a4ec5f *inst/CITATION
cb0c67030b99dd650b539fb33038c535 *inst/WORDLIST
b96d87a2b76e0d81699a6928b020cf0e *inst/docs/ASRgenomics_Manual_summary.pdf
ff3900ae92f3815ff93a7004c1d3bc4b *man/ASRgenomics-package.Rd
8611ae30c8f24d279ddd74005d24d363 *man/Fis.Rd
5269e550af6bf722497cdcdcef6f5494 *man/G.inverse.Rd
0da14a8f69eec95f0fad7783fb844cd2 *man/G.matrix.Rd
c55bf99db5ed0fa33374d0cd26d1dff5 *man/G.predict.Rd
a82a83481105758c58d2a542e1b649f5 *man/G.tuneup.Rd
ebd9add2979e3d331b6ad165a6b021d9 *man/H.inverse.Rd
7be9bd648680769ed1620b059fbed468 *man/H.matrix.Rd
18adde6bd5f837c0ceb68977a62fc3fa *man/Kinv.condition.Rd
17a7f736c677d1c7dbb4fac8e48fe054 *man/callrate.Rd
bb9671186fcfa605051083d619f8b03e *man/check.args_.Rd
b1561829b94e7735e584003725903e2e *man/check.data.mode_.Rd
bf79143c9eb4866f0eb79792dfa14fa4 *man/check.data_.Rd
8616db25a930c81ce10f927fd55908dc *man/check.logical_.Rd
dce28f460d4d3ebc2d3a9d8f8929e2ab *man/dummy.map_.Rd
b02d92a72ff3df46db41e16434f2fa83 *man/full2sparse.Rd
4f496c90d4c02db06d9eaccd50125363 *man/geno.apple.Rd
619985b70690f18c49c33f32c71b932c *man/geno.pine655.Rd
bd2a110922aedad18f25e90b590cd396 *man/geno.pine926.Rd
cf07211d48e7baa0dbed06a6cdd125f6 *man/geno.salmon.Rd
afe171d7daa8ddfe4a03b79794e105d4 *man/heterozygosity.Rd
6e560cbafe5661c26ce22f6d8c4d1acd *man/kinship.diagnostics.Rd
50c8472dd5a6ffe8fd5368a3c038c41c *man/kinship.heatmap.Rd
84ed67cf8c5ae2ae0d18ab25d5ed66c4 *man/kinship.pca.Rd
743ecc4cfc610179e0aead1cbd9c35ec *man/maf.Rd
b61e08a95d92ca10adbb4a808dea8424 *man/match.G2A.Rd
f6783209fbd532249d0732cc93ce919a *man/match.kinship2pheno.Rd
9c6e2c9ecfae40bd6749ca4d9f960f32 *man/ped.pine.Rd
8ace23b1f4cd71ce774f6cc9bac988a6 *man/ped.salmon.Rd
f82aecf1089ba725f3d7d7da7feec15e *man/pheno.apple.Rd
2dec0976c96bc7c0fdd42c7d3ed027ee *man/pheno.pine.Rd
bea6252f34e54bfaa842f531f41304bd *man/pheno.salmon.Rd
3c9dc009f274dd2297cae5687e0d75c8 *man/qc.filtering.Rd
0df796ef8746e54b95531bf7f473a115 *man/silent_.Rd
1d50fe8acbb2000d86c7207c46499612 *man/snp.pca.Rd
efb71232361222ec0a55be892df0c17c *man/snp.pruning.Rd
5c45532f69aa47b1b53ae06e482280a7 *man/snp.recode.Rd
0a1f315906433b9eba9b5d9321295aaa *man/sparse2full.Rd
685b7a841738a3f8a7addb2efdb2cb08 *man/synthetic.cross.Rd
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
1e3a742e672b0d6e4b403e15a95f7ba6 *tests/testthat.R
0d5399a345a2301f02dc5f39f85ca0af *tests/testthat/Rplots.pdf
35e5f338251a7e958d0a5c89842aee5f *tests/testthat/test-Ginverse.R
6ec2d45a87835a8d848f2908062d5ea9 *tests/testthat/test-Gmatrix.R
93ce4ab93c51fba76b84fb0296aa21f1 *tests/testthat/test-Gpredict.R
5fe39d604322c8188afe1de9ae52aca3 *tests/testthat/test-Gtuneup.R
f632ca034648fc97524dc8e5086000ca *tests/testthat/test-Hinverse.R
ac63f32781753a089e13d89c4987d915 *tests/testthat/test-Hmatrix.R
ed2f32c5815d5a6e44e816daffb4df3b *tests/testthat/test-checkargs.R
843257ee3ab21546a54a6bef22cbddd0 *tests/testthat/test-internal.R
ebdb93c89ba0b37b66db9fb4a6f9653e *tests/testthat/test-kinshipdiagnostics.R
39739e4abae7343b18780512a8ff69e6 *tests/testthat/test-kinshipheat.R
1d744a84b93d4da0f377812a1a9ab3e1 *tests/testthat/test-kinshippca.R
4482d587f1ea71da42e88445d9c67522 *tests/testthat/test-matchG2A.R
d5db239a066e0f70770ebfb54655de22 *tests/testthat/test-matchK2pheno.R
ff240b7fe9e215fe238c2c465281ddc3 *tests/testthat/test-qc.R
23e093a94939d4636349fb3812ee029f *tests/testthat/test-recode.R
01d525b802179d679bad940b6e589d7e *tests/testthat/test-snpPCA.R
406ebfd869f39e8ebf0a140399cfc975 *tests/testthat/test-snppruning.R
fd7de90ca9a4031bc1c0fc70a67457b5 *tests/testthat/test-sparseandfull.R
7bc66eb941268752cc0e08d5ae85be90 *tests/testthat/test-syntheticcross.R
