64919fed7149394fe9da0de62f6c6256 *DESCRIPTION
4c9cc146da80bc769502905711e91a30 *NAMESPACE
981ebdb36c8e0a7f9df47e492bd30a8f *NEWS.md
8cc075ce7082038769ff3f9fb21750ba *R/CheckDiemFormat.r
cde8e97ccc9d9e22daeee45aa565db86 *R/ModelOfDiagnostic.r
ff4d746677bb9535457e4a3eb65aa1e9 *R/diem.r
b5d60014d198d89dd5cc93c16cdefd0b *R/emPolarise.r
af92621050c454b3fbd1ad3ee64a02f0 *R/extdata.r
22ef3799dff382a4d36e7311daf44d47 *R/importPolarized.r
33420b5b81c74d3aae5313c8e1ac0138 *R/internal.r
1b3d54b64c9a8aaba355d1d3746da69c *R/pHetErrOnStateCount.r
87b3718854f9c28af32c74dbecc2a75b *R/plotDeFinetti.r
86007fa2107758a4487cf5363fbbf6f3 *R/plotMarkerAxis.r
36e1909243042dcb84e03a1b80a392a0 *R/plotPolarized.r
50fc0b68cc0634be14d9b7bc877eaf25 *R/rank2map.r
3be3331573f5a9954478e198bb5674bc *R/sStateCount.r
16d04ab86f319c1635b117dc5352f610 *R/smoothPolarizedGenotypes.r
c99d910010d79eb4fcf94f158383e0be *R/vcf2diem.r
89d659d9e8b8a380e835490af4b1d324 *build/vignette.rds
62f40a252d9907d9557947ec13f7a006 *inst/CITATION
bf5ed8d0211e30a3e18c08ffbb2c1246 *inst/doc/Importing-data-for-genome-polarisation.R
1d086ab37f064460fe61560b6a81cfe2 *inst/doc/Importing-data-for-genome-polarisation.Rmd
27d7634781c6fdd14220afe8e2c50fbe *inst/doc/Importing-data-for-genome-polarisation.html
03ed78ba30051f289a928aa8ba47def0 *inst/doc/Understanding-genome-polarisation-output-files.R
97313c5eb9d612104957e6dad2361192 *inst/doc/Understanding-genome-polarisation-output-files.Rmd
6df3ea087fac0e9d918bf47a92795cdc *inst/doc/Understanding-genome-polarisation-output-files.html
52eba2c19f663111410c3f337e5aebd0 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.R
c43ee82deec4f0638b017f2c1f7f5095 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd
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67e554b1c00509ebeb65d8447c6d4d87 *inst/extdata/brenthis.vcf
06575e9e6a223a800c78ade995220bc8 *inst/extdata/data7x10.txt
b8f49ea8d12ffb825b82e4f25619553a *inst/extdata/data7x3.txt
495549483e4157b4105c8053357170b5 *inst/extdata/myotis.vcf
59d690166d08a2ccd4bb5910ecbebcea *inst/extdata/testdata.vcf
137b08fa9b0f2e4585e5d7b080605c5b *man/CheckDiemFormat.Rd
2dc7d34729ec3cd227f15f49a0c1c2e7 *man/ModelOfDiagnostic.Rd
c5302a20650013ab385cf3a43c919401 *man/brenthis.Rd
7fe9515daf448a0dc4d94f446eb24684 *man/diem.Rd
1500d8b91eab46424c18c919789dbac5 *man/emPolarise.Rd
3b57bd1912a242c1b48a39bbdc969f8b *man/importPolarized.Rd
a827f6e87a5f8cdb8124920992bd2436 *man/myotis.Rd
d658b0e5c00768c6768706d0fd941f4e *man/pHetErrOnStateCount.Rd
1d5ee4495adccccaad198074ac707446 *man/plotDeFinetti.Rd
df601e0bae1a37f9c255b65d68d65700 *man/plotMarkerAxis.Rd
8d6c3aa253603d61ccd4c11f829d20a4 *man/plotPolarized.Rd
bf3685cafc4188c43518bdb06a862896 *man/rank2map.Rd
60d28fbd537c27e23b27c1900675ddf7 *man/sStateCount.Rd
05ba7eeeb9c4780879542bcdf7ca3097 *man/smoothPolarizedGenotypes.Rd
2e7317858013a54e72c8f72e32a1982e *man/testdata.Rd
c0e34fc1e4c116939bf895475dd7c2ee *man/truncatedLaplace.Rd
f202b8eb70860f2ffe38db77bcf3d4a2 *man/unbiasedWeightedStateChoice.Rd
34ceb29d5e343226b107d5ddac047b5a *man/vcf2diem.Rd
dc2dfdb6f5e44147dfd11b24055b3bbd *tests/testthat.R
7332d4caa92a36bb0b8aefddc828218e *tests/testthat/_snaps/vcf2diem.md
db1a2d705998bed4e8b9d54dde4a426d *tests/testthat/test_CheckDiemFormat.r
ef912b613937ebd7461498dbb34c73ae *tests/testthat/test_ModelOfDiagnostics.r
0112b705d9ec1615bf78fccd276e7613 *tests/testthat/test_emPolarise.r
c26d4cf96f070766cf471957a70d5ea8 *tests/testthat/test_importPolarized.r
a4633d1e3e9f6e414bce94be1939c59d *tests/testthat/test_internal.r
b8373702cfb746c2dae849195cfa2bd4 *tests/testthat/test_pHetErrOnStateCounts.r
0178c19388788f62661e8332dbb6d4bf *tests/testthat/test_plotPolarized.r
e21f6ed1d6eb1d003036e9f64a706285 *tests/testthat/test_vcf2diem.r
1d086ab37f064460fe61560b6a81cfe2 *vignettes/Importing-data-for-genome-polarisation.Rmd
97313c5eb9d612104957e6dad2361192 *vignettes/Understanding-genome-polarisation-output-files.Rmd
342ac9c0978ec5b576eaa114bd2d03b9 *vignettes/diemOutput.png
c43ee82deec4f0638b017f2c1f7f5095 *vignettes/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd
ada6c5be0db8ab45f3d09cba52421af2 *vignettes/refs.bib
