Package: AiES
Type: Package
Title: Axon Integrity Evaluation System for Microscopy Images
Version: 1.0.0
Authors@R: c(
    person("Shinji", "Tokunaga", email = "tokunaga@ncnp.go.jp", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-8398-3054")),
    person("Masabumi", "Funakoshi", email = "funakoshi@ncnp.go.jp", role = "ctb"),
    person("Toshiyuki", "Araki", email = "taraki@ncnp.go.jp", role = "ctb", comment = c(ORCID = "0000-0003-3625-2042")),
    person("National Center of Neurology and Psychiatry", role = "cph")
    )
Description: Provides tools for the quantitative analysis of axon integrity
    in phase-contrast microscopy images. 'AiES' (Axon integrity Evaluation
    System) implements image pre-processing, adaptive thresholding, feature
    extraction, and support vector machine-based classification to compute
    indices such as the Axon Integrity Index (AII) and Degeneration Index
    (DI). Two built-in models are provided, and classifiers can be re-trained
    on user data. The package is designed for reproducible and automated
    analysis in neuroscience research.
License: BSD_3_clause + file LICENSE
Copyright: 2025 National Center of Neurology and Psychiatry
Encoding: UTF-8
RoxygenNote: 7.3.3
URL: https://github.com/BreezyCave/AiES
BugReports: https://github.com/BreezyCave/AiES/issues
Depends: R (>= 3.6.0)
Imports: EBImage, e1071, stats, fs, utils, data.table, rstudioapi, tiff
Suggests: knitr, rmarkdown, tcltk, svDialogs
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-11-02 13:56:28 UTC; 20040
Author: Shinji Tokunaga [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8398-3054>),
  Masabumi Funakoshi [ctb],
  Toshiyuki Araki [ctb] (ORCID: <https://orcid.org/0000-0003-3625-2042>),
  National Center of Neurology and Psychiatry [cph]
Maintainer: Shinji Tokunaga <tokunaga@ncnp.go.jp>
Repository: CRAN
Date/Publication: 2026-11-02 16:40:23 UTC
