9d146f60954c09f2b14802b004b73364 *DESCRIPTION
d822e37dc537e399f272fa453b9fa420 *NAMESPACE
e347190bf4e5d85d998af7855eb5f356 *R/clone.R
23f213c1f3b8666ae18423e6952cae32 *R/data.R
35ed279f41dc168038ea46413fa1cc30 *R/generate_instances.R
1d1bcd54d49a3ec6e4a657328380ca94 *R/phylotree_class.R
2340815c639e2c46c1d515148044ef40 *R/tree.R
f6eaf02ae8a06d07399267c4c26b4314 *R/utils.R
15ad2607166ef95434d6f3a7293d0422 *README.md
12ee4aab37fd171e2f297ed89f0ba159 *build/vignette.rds
93685f97e15e35847479659058090bc4 *data/B_mats.rda
6b488a4b9bc8df501301173b9ddcaf61 *data/palettes.rda
c0e24d90859545fb997c89d2558f2cfe *inst/doc/models.R
1c9659868f79b9c727662b42267156cc *inst/doc/models.Rmd
ec069280675ba188ebfc83dbaf5923a1 *inst/doc/models.html
65110430093bd44acb0fd57ac44e95f4 *inst/doc/usage.R
cb2730d804053363861cf2e4c9abc00b *inst/doc/usage.Rmd
0ea531f7130f485e593fac9867fb5b75 *inst/doc/usage.html
cd7533656c94847cf281b42e3d531766 *inst/extdata/GeRnika.png
6679a8833b3680450914e10211641ce3 *man/B_mats.Rd
c5d042997d05203855ce2ab1a2a2eeab *man/B_to_phylotree.Rd
19b0798e9bc1f6e43432a7f632624ce7 *man/Phylotree-class.Rd
729399b8be50ad44219e0e810d712f8e *man/add_noise.Rd
7cb2749d7bb06294321f4a0d8adbb994 *man/combine_trees.Rd
45ed756191351c2bae8309ea069ef11c *man/create_B.Rd
54e99244723e979d3c001b1993535808 *man/create_F.Rd
a5c33b7a39d561b9499c76bea1fea36f *man/create_U.Rd
ec47afb8d311b7344be609bdee738850 *man/create_instance.Rd
ac47dfbf8f5bfa190a4e552dfcdc0f3b *man/create_phylotree.Rd
43f5d03609c42159bb3012f95ec56cd2 *man/equals.Rd
586c480c479065757be40178a4d1fde6 *man/find_common_subtrees.Rd
34f3cc8b91c84ab4e90acd28921f55a8 *man/palettes.Rd
da04e8eb0cb9a923a4719e941aa5761f *man/plot.Rd
8e9dd66be3cc500f1c9cc879f20fe4ba *man/plot_proportions.Rd
4c69ea97a59979eae950427b7ce9abd0 *vignettes/figs/clone_distance.png
c36c1a5d9e284fe72f4b4743aa9480f1 *vignettes/figs/model_summary_goodqual.jpg
a37fc40356c14e627971f1c44cceb320 *vignettes/figs/noisy_F_error.png
a3f60681a1c7bfd30d56f00810447425 *vignettes/figs/ternary_plots.png
664367689a89b978b8307ec2cea90016 *vignettes/figs/tumor_model_k.png
1c9659868f79b9c727662b42267156cc *vignettes/models.Rmd
46179146e8a4d2194d9b70f4a513dc5a *vignettes/references.bibtex
cb2730d804053363861cf2e4c9abc00b *vignettes/usage.Rmd
