df6aed5bb235285603842f549e25e42a *DESCRIPTION
e746c0a415abfadd67161298b888d736 *LICENSE
b3e9aa71122bb25bd6ab90f10b23df1f *NAMESPACE
0c1f5ff5424f4a16a6ff9ec178c2ddcd *NEWS.md
7af569934334615e81b8f7e68b235d5c *R/boot_lucid.R
6b5956ea31e189bf2ea5552766b3fb78 *R/data.R
15e16ec16c4e552ddf0df9519caad05c *R/density_helpers.R
e7195a4445cf909196685ab6b90f58bd *R/early_integration_em.R
4d9f4759d6ec67923a384e1f95bc308b *R/early_integration_family.R
6b8165c268d9a863f21f1ccfbb131ab6 *R/em_utils.R
8d9634bb5705778d03034fb84d6c447f *R/estimate_lucid.R
9571a6adc767880a206461dff3be1b91 *R/g_computation_utility.R
dc7df3ebad0aa9f69e4225eed60e25cf *R/input_validation.R
9f7b8301a1aa4003f04f625f8e471e1a *R/lucid.R
943e41750abbdac6ff438ecea948d63f *R/missing_data_diagnostics.R
6303502b77df512501d2ac46daf9aef1 *R/missing_data_em.R
584c47ce3e78a0f118c94d9a6d731daf *R/model_extractors.R
508c15abf55f2f9d97d321a39f57b7f6 *R/outcome_utils.R
c79e75d85575f48bb04acef933c7f22c *R/parallel_estep.R
8c2d7b528fb1a55905249746ecd3191e *R/parallel_mstep.R
9982abd3f5186a3376f341a40e3297bc *R/plot_cluster_omic_profile.R
dc1ac2b25eda4a901fb3a15dbcce525d *R/plot_lucid.R
2eac48f3fa8c4b5c80f3c408b473b2b8 *R/predict_lucid.R
e5c19bae06ffdc282258798dcebb7c84 *R/stability_utils.R
0aab380224cc4e7f6869db87f23357c5 *R/summary.R
671e199031d06be93004fdd7bab5c174 *R/tune_lucid.R
a0b9b1946c80c66059e6d6404ac8998a *build/vignette.rds
e1b7e42bbb3f026b3e81c672f6fe1c46 *data/sim_data.rda
0a931f13375442ad14a229dcb7b9447d *data/simulated_HELIX_data.rda
454284b9f561191f3bdf0f99833459e0 *inst/doc/lucid_3models_binary_outcome.R
e121fa7bf60c096e3dbb77e072ed0c48 *inst/doc/lucid_3models_binary_outcome.Rmd
b615ca0c2ceedcca5c510d8227f16bf4 *inst/doc/lucid_3models_binary_outcome.html
46c8ad8e071f04528d46f2a2404829da *inst/doc/lucid_3models_normal_outcome.R
6a84172074e2dc67efcb9b4c24be8794 *inst/doc/lucid_3models_normal_outcome.Rmd
9a6c5efad5844f1299ddd0df17917118 *inst/doc/lucid_3models_normal_outcome.html
232b3ce999d6d628594e55360a843a62 *inst/doc/lucid_early_sankey_top_omics_tutorial.R
b540c1a2a5be7b17340e031d8fbd43a4 *inst/doc/lucid_early_sankey_top_omics_tutorial.Rmd
5c657c42f7ec437880e06a03eaff5334 *inst/doc/lucid_early_sankey_top_omics_tutorial.html
362a93e7c28428616464b2d7b5671620 *inst/doc/lucidus_full_functionality_guide.R
9d8f19c9d79817ce6f7cd940350135c6 *inst/doc/lucidus_full_functionality_guide.Rmd
26cdc4386fd6264c35b5eb2fedad8f3b *inst/doc/lucidus_full_functionality_guide.html
3d44ac6a4095a5bab893379aef3e8608 *inst/doc/serial_6stage_parallel_monotone_missing_tutorial.R
5c897c2d3b91e294ba9893b1dd89efea *inst/doc/serial_6stage_parallel_monotone_missing_tutorial.Rmd
59b9c16e3f58c8c4c6d896406c12f571 *inst/doc/serial_6stage_parallel_monotone_missing_tutorial.html
76dc181b146fced23bbf8bc289e5404d *man/analyze_missing_pattern.Rd
48536c5c38de2c8008a5c86404b45451 *man/boot_lucid.Rd
608f7e1ee4c4177c18e4f8c6417757ca *man/check_imputation_quality.Rd
46170c4d2eb627c9a9b67e3d7d63f045 *man/check_na.Rd
4a3ccb74d7197b56f3d730e2072d3ab4 *man/estimate_lucid.Rd
7806024a4ced40d5b90ef61075c648c2 *man/figures/README-profile-1.png
09b55f4547c2983ad4972271b80762f1 *man/get_cluster_assignment.Rd
9209baf1e9024dd03c5093bf0b2424b8 *man/get_selected_G.Rd
a8046ef51b8c1c190bb05872827b4914 *man/get_selected_Z.Rd
686c046dec4fe858ee2f27fe228c493c *man/get_top_omics_features.Rd
928e41ff4bf08049eb40a956660cd095 *man/lucid.Rd
211fe62121a0305a3827a2f5bbc882a6 *man/plot.early_lucid.Rd
3dc70d6597dd544c3b47dc0b5944d215 *man/plot.lucid_parallel.Rd
c0dab8aba4f8e9f32304073df405ae8c *man/plot.lucid_serial.Rd
d510c5fa1f100e3028e80ed8f82c3734 *man/plot_cluster_omic_profile.Rd
a86f84cf8701dbf7a263af84803edcc5 *man/predict_lucid.Rd
3f83d78428f72099a03ce8dc19ea97e5 *man/print.sumlucid_early.Rd
a397da580b2abb0f6bfc887d8eadc1d2 *man/print.sumlucid_parallel.Rd
0e0dd613bcd2c21294f0e8ec1d492e05 *man/print.sumlucid_serial.Rd
ba3716690fa15e15a33b402727268558 *man/safe_impute.Rd
f50b579858b1b05ecdbe28c4d593a8bd *man/sim_data.Rd
201fe8386574effdfb9f307a2e0f9e1e *man/simulated_HELIX_data.Rd
75781c9aa95b96f94a42382a82aaa640 *man/summary.lucid_parallel.Rd
98c746d7a2c88c9a4e9a916c9994e218 *man/summary.lucid_serial.Rd
0dabf714e27ff3a7fe9bc2b4ce647740 *man/summary_lucid.Rd
151413d3dbce600f7edb2ae21cd828d0 *man/tune_lucid.Rd
3d6ee8c3f2d0b906d0eb42b45527d56c *tests/testthat.R
de9f9167420a44b75dd52cd1fa7b8b3d *tests/testthat/helper-oracle.R
42c929ba16ef3877397d0a47b2fcd519 *tests/testthat/helper-sim.R
a8b271b365cf07249b7cdf7454b2c083 *tests/testthat/test-Serial-binary-missing.R
96fcf8c39417e33a69d7f315ec750ec8 *tests/testthat/test-Serial-binary-summary.R
9b8e459ad6a378151f7f0529204b86ef *tests/testthat/test-Serial-normal-missing.R
5a5ae5628a53c154626acbdf0f2ce963 *tests/testthat/test-accuracy-ci-coverage.R
64390d9f550398017c8a3c001a1ad613 *tests/testthat/test-accuracy-imputation.R
c8098cde83d9cfdd8d647cd0b5d82a54 *tests/testthat/test-accuracy-recovery.R
514c80d4564e70c8d06deb252e875be8 *tests/testthat/test-accuracy-selection.R
e24488a65cdc326d836a073d1435fdf1 *tests/testthat/test-boot-lucid-early.R
2d3547edae46535c70087f280e0c143c *tests/testthat/test-boot-lucid-parallel.R
0dc35d1346f55cca230325ad0b939117 *tests/testthat/test-boot-lucid-qc.R
3c88bed07ef822ea6f497a7fea350f3f *tests/testthat/test-boot-lucid-serial.R
66296f03c1cd94a19764c7ee516cbc23 *tests/testthat/test-check-K-validation.R
88b28ddcdf3a2f0fe89a2e9727fd0d6e *tests/testthat/test-convergence-monotonicity.R
1a1e35146c63952c16bb84c0986e1970 *tests/testthat/test-defect-init-model-null.R
8f2af60c1692193258c0d01d77264506 *tests/testthat/test-defect-regressions.R
9cc7a70aeecee49941002d84935c4360 *tests/testthat/test-early-robustness.R
dfe034543ec190f9984051f8382b626c *tests/testthat/test-em-restart-guard.R
4809beb8c91d913f62582856d724a021 *tests/testthat/test-extreme-edge-cases.R
be4fbe19e7bfe1e8c1274b1c7d7a1451 *tests/testthat/test-g_comp-binary-3-layers.R
21aec4d4591d92f2338a0c569da56c3e *tests/testthat/test-gcomp-binary-1-layer.R
6d6bcdaf8ecebc6df18b7e3be74c64b1 *tests/testthat/test-gcomp-early-parallel-contract.R
da0f01e64b86ee0608e6d9a718bde061 *tests/testthat/test-gcomp-serial-normal-5-layers.R
edb5d93e01c19b1905b872a3296d3cce *tests/testthat/test-grid-fit-sanity.R
8154f162cb8766e42eea84d548b08c74 *tests/testthat/test-grid-missingness-invariants.R
ada1258cb96fefd8f2da403e59674850 *tests/testthat/test-grid-predict-modes.R
aa9f269d949e4c5e1581f8374aae202d *tests/testthat/test-invalid-input.R
939c24e1cfbf3c9dc38991c3cd90d00f *tests/testthat/test-label-switching.R
6e5b99ef1832adaa405c16055e9cc992 *tests/testthat/test-lucid-binary-1-layer.R
764397ff00323eddaff6393f9369b61a *tests/testthat/test-lucid-binary-3-layers.R
8fd43ed61dc2396e4987d8240d39666f *tests/testthat/test-lucid-binary-5-layers.R
bf8d97263af97b552b82239584160277 *tests/testthat/test-lucid-model-default.R
e37e48a7b2985b3ead8a192a1e1d255c *tests/testthat/test-lucid-normal-1-layer.R
9b72450f3df2a0cf4de3463bd98e7ec0 *tests/testthat/test-lucid-normal-3-layers.R
b5bcd2f17a3c7eee2471119c78a90107 *tests/testthat/test-lucid-normal-5-layers.R
7a65aee906ba8fecefd109fb5812b1e5 *tests/testthat/test-missing-binary-1-layer.R
03024b176b72addaad2b27a8e1c242d9 *tests/testthat/test-missing-binary-5-layers.R
c16dfaf0482f67e6b23696a20b041163 *tests/testthat/test-missing-data-mechanism.R
803596fd42158856eb607f0663354ee2 *tests/testthat/test-missing-normal-1-layers.R
c9e728f38737a3dd13f92572c7e7d9ff *tests/testthat/test-missing-normal-3-layers.R
99f2274c1af98fafdd54e22fa22399d9 *tests/testthat/test-model-extractors.R
c7303a1af881dd621d4c91d89bf89170 *tests/testthat/test-outcome-integration-regressions.R
ef262510eb6e776856a4f2f1d85d5568 *tests/testthat/test-outcome-parameterization.R
eafcf3be7335cc6e41aaee7bddea119e *tests/testthat/test-paper-equations-oracle.R
6597042d3865fd15d564ef867a8d2fe2 *tests/testthat/test-paper-likelihood-bic.R
ffcc8f8eee3112b3d48773f9ba7665e1 *tests/testthat/test-paper-missing-equation17.R
daf763cd5c6da32e2bf5b3794671bfcf *tests/testthat/test-paper-outcome-mstep.R
f00877a76c08ac6bc30ec06f9f1047d8 *tests/testthat/test-paper-parallel-arbitrary-layers.R
f3e9db3e32cb87c9b230312cb02725ff *tests/testthat/test-paper-simulation-recovery.R
b6dbb0e18218542e3eedae501f0dea7c *tests/testthat/test-parallel-p0-regressions.R
ce7ed5544f5923eacaf9aa7c74de6369 *tests/testthat/test-parallel-p1-plumbing.R
7587ed6e2a338f2720883ca800f992ed *tests/testthat/test-parallel-robustness-extra.R
468daea1c1e64194e8a48efd6e471f6f *tests/testthat/test-parallel-selection-impute.R
5e5787c992cc3ec57d217e3085687d98 *tests/testthat/test-parallel-tuning-penalty-grid.R
e51a9220a87d6522e965cdc59a7a6db8 *tests/testthat/test-plot-cluster-omic-profile.R
e4ac4cfa83370ac121585be67915c018 *tests/testthat/test-plot-profile-generalizability.R
40171889eeb7ebea535da973763a4beb *tests/testthat/test-plot_lucid_1_layer.R
5279edb977617203f667b67533c3ec92 *tests/testthat/test-predict-argument-modes.R
f50c4497175cd43ca81aff8a10473877 *tests/testthat/test-predict-binary-1-layer.R
1543f553073057fa249669cd4ca6cf5f *tests/testthat/test-predict-binary-3-layers.R
313b72d64b7e801d0d891e7a70f2a8b8 *tests/testthat/test-predict-binary-5-layers.R
ae1565b7dc31928fbb418827684a2435 *tests/testthat/test-predict-normal-5-layers.R
20788ed5193929d123e9cce29e659a31 *tests/testthat/test-predict-serial-binary-5-layers.R
02dd5351bcba3fdb7287a53fdd949151 *tests/testthat/test-predict-serial-normal-5-layers.R
724799f962648a77b7d5eefe50b7282e *tests/testthat/test-predict_normal_1_layer.R
880bd9976c8566758b319f60f6d09968 *tests/testthat/test-rho-g-exposure-only-consistency.R
cf4072a01f73b62b6eed8223bdb39328 *tests/testthat/test-serial-6stage-parallel-smoke.R
d019d167b99df16fbfcbf977e10109dd *tests/testthat/test-serial-em-control.R
db31a4dd3b2fd66e35be05bca49e6b01 *tests/testthat/test-serial-fit-missing-robustness.R
be3b3bc37a94c93889abcdfb2f93ee85 *tests/testthat/test-serial-reproducibility.R
fc2f0587c6172fe77adaee66eaafabfb *tests/testthat/test-serial-select-and-likelihood.R
27e78554f0528d066220545f35a31267 *tests/testthat/test-serial-summary-context-labels.R
82c7cc6aeb5b616bac7aac912ec24fb5 *tests/testthat/test-serial-summary-shape.R
0188186cb2317eb95c2c246bf4314a77 *tests/testthat/test-summart-binary-5-layers.R
af4f5adbaa175b034a11235f0a27fb8f *tests/testthat/test-summary-missing-profile.R
5cfbae2b7bfb506570d9c4189cd0eaea *tests/testthat/test-summary-normal-5-layers.R
68ca327cab8792bfc0c7aef7184b1d2f *tests/testthat/test-summary-output-correctness.R
5c88635884a464f05552e0c44227a874 *tests/testthat/test-summary-significance-stars.R
0f92dd7d6acf52ba962f004ea459722a *tests/testthat/test-tune-Serial-binary.R
df84021a56fbdcaf10cb2db9e3cfaf22 *tests/testthat/test-tune-Serial-normal.R
eb73bc0c5a1c1e69be35b6e0d54222e4 *tests/testthat/test-tune-binary-2-layers.R
a83d0661a7922b0227df2098eafedec5 *tests/testthat/test-tune-lucid-serial-robustness.R
0d3d623167fbf0cf87e692161066c5a8 *tests/testthat/test-tune-normal-2-layers.R
13e8f3beaa0b7117b9f592adf8ffb4a9 *tests/testthat/test-tune-penalty-fail-guard.R
2350babdf90bf039b07602c993fd2e09 *tests/testthat/test-tuning-verbose.R
a759a900bf3f71a41732343479d5fbc4 *tests/testthat/test-verbose-fit-logging.R
bfbb9ee2c216d9e3d4b2060c06672a07 *tests/testthat/test-workhorse-p0-p1-regressions.R
e121fa7bf60c096e3dbb77e072ed0c48 *vignettes/lucid_3models_binary_outcome.Rmd
6a84172074e2dc67efcb9b4c24be8794 *vignettes/lucid_3models_normal_outcome.Rmd
b540c1a2a5be7b17340e031d8fbd43a4 *vignettes/lucid_early_sankey_top_omics_tutorial.Rmd
9d8f19c9d79817ce6f7cd940350135c6 *vignettes/lucidus_full_functionality_guide.Rmd
5c897c2d3b91e294ba9893b1dd89efea *vignettes/serial_6stage_parallel_monotone_missing_tutorial.Rmd
