a476e91979395ed2b69721abe376b32f *DESCRIPTION
66580fa24c1d3687cf3dc112f04027ba *NAMESPACE
f323a122d441f13c02a8fbe6fbbc9cb0 *R/RcppExports.R
89e58f2910e1c86eab4d223ec5ae1758 *R/SNPkit-package.R
aaeede4ad1e0531b590923c9b5710772 *R/admixture.R
b3506f1909d19a7af8166c37c3b85228 *R/build_fimpute_runner.R
7349010b3c3fa9a4dc632564272cdd61 *R/classes.R
39d5800a77347b260ccdb58f2d5535c9 *R/combine.R
94b018d0e990c5c446096c8f77b6739b *R/fimpute_runner.R
46796aa5de6e469272e7568c6feface3 *R/getGeno.R
3860ccbcc8958d1ca4c5e01004e6534a *R/import_batch.R
a697e37998a7eff15eb32996dedd8c76 *R/mat2SnpMatrix.R
1ee882ac9c30bd658a18b69537bb7553 *R/qcSNPs.R
28a52061a1746d7ef3ca2505ff692f07 *R/qcSamples.R
b6fd68afbb4c09fcbca2315ca2216693 *R/readFimpute.R
3ed380cb49c27e92f0c70e11d2adb3ad *R/save_fimpute.R
bd1ffe604fb716bd6c39209da41df400 *R/save_plink.R
f56bc6807393e4fe1f5f87b77e6bd1ba *R/summary.R
1fee825f91a52d8838ae9d5befc828bc *R/utils_anticlustering.R
11837fa16414ba05644f7ee07c623c7b *R/utils_display.R
143cc172edc0c6c4531ce0f595db4a60 *R/utils_fQC.R
2e5f5447b289c5933897c78dd65ee58a *R/utils_geno.R
93f910d855be431be27bf6b64a33610a *README.md
a5fa006de75dce73b97a5ed60168b338 *build/vignette.rds
f7aed632432ef79f4077c315706d5b8f *inst/CITATION
85b60f597473b4b36770eb305bed7549 *inst/doc/Introduction.R
5c16b1a6151e8b60570510083e0ec854 *inst/doc/Introduction.Rmd
9632f82fcb3f2989083f906b926f2586 *inst/doc/Introduction.html
ef66a2654370e6b0db8b645fa9c22344 *man/FImputeExport-class.Rd
8f2535b7a18db785517b2a488a34408b *man/FImputeRunner-class.Rd
af1a0877b33a8f9c9169dc0068689739 *man/FImputeRunner.Rd
d914441a4d2622d9dc524f4c9c2e24bc *man/SNPFileConfig-class.Rd
faffc1fc1af19232862dfc09c7066202 *man/SNPImportList-class.Rd
6577dbdcf8fdeca34c15addfdbc6d41a *man/SNPkit.Rd
e671ed2ed16862cff23679fb81defc3a *man/Subset.Rd
cd7f64517b617f59983246c9c84b7fb7 *man/as_snpmatrix.Rd
515007c2e23225aa4065d9aa3e9e218b *man/cbind_SnpMatrix.Rd
b569e19750a9844c689e9b2bca9ec095 *man/check.call.rate.Rd
c1ac479904a3fd953aeb893cd79d4ec2 *man/check.ibs.Rd
e987e3802402a95ad7956f5dc473b372 *man/check.identical.samples.Rd
235bedb067b5b7e20c515d6f75ea0fc6 *man/check.identical.samples.by.block.Rd
37550a6216bbbb68749c5bb29d18f528 *man/check.mendelian.inconsistencies.Rd
0b774a94553a39bb4e56da477a772f5c *man/check.mendelian.inconsistencies.pair.Rd
db4550e69bb963029ec9357efbe1ec42 *man/check.sample.call.rate.Rd
b86d4e84647bb2e1b4025af2262eee31 *man/check.sample.heterozygosity.Rd
d448d59cb54bb493f908ebee197bdb9f *man/check.snp.chromo.Rd
5aaa50f60f03981c2503212eafaf99f5 *man/check.snp.hwe.Rd
f8c9daca1f170740b582965a8f8e44ff *man/check.snp.hwe.chi2.Rd
6abe9ac239670f503dac24b398f4b506 *man/check.snp.maf.Rd
364f83efd9beb016182b7cd28d36a177 *man/check.snp.mgf.Rd
613c4d75e13231cc69e76f4fb344ed82 *man/check.snp.monomorf.Rd
227d7cdd0ccdb512e1fb3552b85d9ee3 *man/check.snp.no.position.Rd
ac50a88b80936e41c95dea7bd5a08d9b *man/check.snp.same.position.Rd
56a1ed250238954dbc7a6df38a23aa8d *man/combineSNPData.Rd
b5f068da0ab47b7cc03327cfe6fa0912 *man/doPCA.Rd
b773390312d4bebdb7f7f2e85a20c1bf *man/exploratory.plots.Rd
d1897f41434c55286a83687796128142 *man/figures/logo.png
a189c0e583e31bb9874e26cda331e884 *man/genoToDF.Rd
ecdc6b0253caf77437b4f866b23a5304 *man/get.correl.fc.Rd
49924410fa3241d7397b358f81952050 *man/get.gender.Rd
021044247a777f0fe77f2df474f92309 *man/get.hwe.chi2.Rd
c357f00ce7579fe740166b6f1b5b9bef *man/getGeno.Rd
f5e7799cba72495a5262fc98e62e0ead *man/ibs.pair.Rd
0da22d42cb5d1a909b300749ffbe8509 *man/importAllGenos.Rd
a46de9a0d688a704d4ecddbc32d2c90a *man/importFImputeResults.Rd
ac38a78e0f61b1cda31aa2a6d2fa7f7c *man/import_geno_list.Rd
909f64c514ff42f2d81ae835e963c919 *man/pairs2sets.Rd
d4ae3a66955f6fb7368e67a2d5b3df33 *man/plotPCAgroups.Rd
d7e799e43df88667e4117608a79a8ab9 *man/print.summary.SNPDataLong.Rd
d82e7e9d7984ac4c1768dfefc4fda456 *man/qcSNPs.Rd
c7c5c756828be6c20140e4936a44cd88 *man/qcSamples.Rd
def8316d7df096028537f640f271d80d *man/qc_header.Rd
edf09408c69e7d63c09abb573084d419 *man/rbindSnpFlexible.Rd
0275c209f24716373a997a897a3fb8bb *man/rbind_SnpMatrix.Rd
e504b8b8fba726cfe6607b98b43dd7c7 *man/read.fimpute.Rd
7b552fe4011359c871d4ac3ab0085ef9 *man/runAnticlusteringPCA.Rd
d174fa2054e5c1226e804e0559fc0828 *man/runFImpute.Rd
a8aa5744a35ad92a077b1047c7de3586 *man/run_admixture.Rd
97b9955fd070146e24501e45dc42e73c *man/saveFImpute.Rd
5f820a3522b0f1016a6588aae5b4842f *man/saveFImputeRaw.Rd
3878766f5a2fa1f8622f3ac58182458f *man/savePlink.Rd
5555f213ef7c94572c6a4e46f08ee6f5 *man/summary-SNPDataLong-method.Rd
bb60d50f206efca2f106d1cf3f361ab6 *src/RcppExports.cpp
b1d6109186ed46d6132f348504e104b6 *src/fimpute_cpp.cpp
81e2b982c0a79e25462f5070cdf621c1 *src/read_fimpute.cpp
5c16b1a6151e8b60570510083e0ec854 *vignettes/Introduction.Rmd
