# Generated by roxygen2: do not edit by hand

S3method(print,summary.SNPDataLong)
export(FImputeRunner)
export(Subset)
export(as_snpmatrix)
export(cbind_SnpMatrix)
export(check.call.rate)
export(check.ibs)
export(check.identical.samples)
export(check.identical.samples.by.block)
export(check.mendelian.inconsistencies)
export(check.mendelian.inconsistencies.pair)
export(check.sample.call.rate)
export(check.sample.heterozygosity)
export(check.snp.chromo)
export(check.snp.hwe)
export(check.snp.hwe.chi2)
export(check.snp.maf)
export(check.snp.mgf)
export(check.snp.monomorf)
export(check.snp.no.position)
export(check.snp.same.position)
export(combineSNPData)
export(doPCA)
export(exploratory.plots)
export(genoToDF)
export(get.correl.fc)
export(get.gender)
export(get.hwe.chi2)
export(getGeno)
export(ibs.pair)
export(importAllGenos)
export(importFImputeResults)
export(import_geno_list)
export(pairs2sets)
export(plotPCAgroups)
export(qcSNPs)
export(qcSamples)
export(qc_header)
export(rbindSnpFlexible)
export(rbind_SnpMatrix)
export(read.fimpute)
export(runAnticlusteringPCA)
export(runFImpute)
export(run_admixture)
export(saveFImpute)
export(saveFImputeRaw)
export(savePlink)
exportClasses(FImputeExport)
exportClasses(FImputeRunner)
exportClasses(SNPFileConfig)
exportClasses(SNPImportList)
exportMethods(Subset)
exportMethods(getGeno)
exportMethods(importAllGenos)
exportMethods(qcSNPs)
exportMethods(runFImpute)
exportMethods(saveFImpute)
exportMethods(summary)
importClassesFrom(snpStats,SnpMatrix)
importFrom(MASS,isoMDS)
importFrom(Rcpp,evalCpp)
importFrom(dplyr,"%>%")
importFrom(dplyr,select)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(graphics,hist)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,text)
importFrom(methods,as)
importFrom(methods,new)
importFrom(stats,hclust)
importFrom(stats,pchisq)
importFrom(stats,prcomp)
importFrom(stats,sd)
importFrom(utils,read.table)
importFrom(utils,write.table)
useDynLib(SNPkit, .registration = TRUE)
