d252a9b49e0df1951e670b138cd8e1f3 *DESCRIPTION
896ef8cb58fced987690f16baefa46f1 *LICENSE
1ad0d59f6e8b32fb7e465dabf4dd46b6 *NAMESPACE
63b76eebc8c23bfae790f4ed73232137 *NEWS.md
4450f0aadd26885df5d663acdb997126 *R/addAnimalsWithNoRelative.R
bdac63b69f3999a6c88cff2957d084fb *R/addBackSecondParents.R
5e5f1bb74d9015867b16576589eb0013 *R/addErrTxt.R
8fd929549a90947556a4f4ef2fbc107b *R/addGenotype.R
d5ae7dcd72ac662e89c54c2814b90304 *R/addGroupOfUnusedAnimals.R
7b267130f21198f8ce828552f2801da1 *R/addIdRecords.R
bb0a60ec54abb2ce485e36a13c1042d0 *R/addKinshipValueCount.R
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12653596f612568841b3155e84760429 *R/addSexAndAgeToGroup.R
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f21b7a9b4c1735b9751447d6398056da *R/affectedConditions.R
a1c5a3bfa84a025ad9d74e6127172c26 *R/allTrueNoNA.R
ff2af5a8f219969a1d1804f8a7d34858 *R/alleleFreq.R
7a5b4b27e2cf1f37bd61be4aef199544 *R/ancestryOverrides.R
61e8e46c0eeccd195354306372c35222 *R/appServer.R
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566b84887577adaff7e83463073b6fb0 *R/appendColonySnapshot.R
369de38dcce75d499d09e7f17c98fca1 *R/applyKinshipOverrides.R
2100dd265b28a056f90f2b88dfad83b5 *R/applyKinshipOverridesToMatrix.R
79e819df1204e97b6a2ec697a97f0ab9 *R/assertFileType.R
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4402fb3f5458569bb4567afa357ec8b7 *R/backfillColonyFacts.R
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2c3dcca6aed8586f5f8b844e0eba5914 *R/breedingGroupLabels.R
30c39de94ebd1bfc70de0a6f8d3241ca *R/buildMarkerGenotypeMatrix.R
e7b6396e750233332689fe8103fd1246 *R/calcA.R
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4f7f472ed95f019a6624f94c65e48850 *R/calcFE.R
11c0eaa93209c28eb5df412a42f5703c *R/calcFEFG.R
0b58c90e30433177829c67f1ae821327 *R/calcFG.R
b2ec0aa28883fc55ccbdf004432bca2c *R/calcFGSE.R
44ae7f8650471f89aa851acf83dfe509 *R/calcFounderContributions.R
70aba107f501cf4b0a6fa943c5aafd52 *R/calcGU.R
b7ee5839cecf65257033a69d8447d519 *R/calcGUSE.R
c3f12c7884fe0e6686eeb9ba432e8ea7 *R/calcGeneDiversity.R
34a8367a503da50ef5509bb3deb6037d *R/calcKurtosis.R
0d7f94fba2fa417f9ca77dc5950fed3f *R/calcNeSexRatio.R
bd9a5c462a5b7a05fe3048ca15ed051a *R/calcNeVariance.R
6f7721d7519f1b9efbccd21400fd1692 *R/calcRetention.R
1861412d24f9515847c32df42fd6c2e9 *R/calcSkewness.R
b3cc0813c07d1632a3170c0e0040752c *R/calcSnapshotDeltas.R
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ee3c7b593860787143e6396897a6f1fd *R/checkAncestryRules.R
312d31e86e30bb0f1c85a34df3029ce4 *R/checkChangedColAndErrorLst.R
9d52225061bc8597320c241fc6bc86a9 *R/checkChangedColsLst.R
9eec11560a61f6343c39018d6f1401b1 *R/checkCrossCenterMapping.R
babf90110aa8e9dbd365e5a632d1951d *R/checkErrorLst.R
62b5fc8090ccdf04a8c4dc905382a1f6 *R/checkFgDegeneracy.R
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788e32633f8d88c36f1b2f264f475352 *R/checkKinshipOverrides.R
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021ff2f9738d91aadd3a7999dc7e1cba *R/checkLocusMetadata.R
51701f03d6b870812c22c6cf526c4ab2 *R/checkMarkerGenotypeFile.R
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4a21931095f7746a7c606187cdd88ee7 *R/checkSequenceGenotypeFile.R
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9c7fad684b4a80ffc9f94ee759c4c2e2 *R/chooseAllelesChar.R
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8b7f0426f434a9062486123f9f03797b *R/createPedOne.R
2c2ad50bd5f2ab9735a0aab5cb0c17fe *R/createPedSix.R
11430aa22439ee613d4c76a13c69a6ca *R/createPedTree.R
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7be2893e9b5784f70b49b798a244e4a0 *R/cumulateSimKinships.R
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4481c2bc1c6f1075a998bc82be5a8a50 *R/filterAge.R
ddba9b81faca501445c6a8424da55648 *R/filterKinMatrix.R
82545a19a5b90fb515849c5d04279ee9 *R/filterPairs.R
5562dc9069a79822d3e74c089d279069 *R/filterReport.R
5c325bc2a6d16169d275124fbe6061ea *R/filterThreshold.R
7257062dad2d7efd9d40434d3ccf51be *R/findGeneration.R
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14927fd6595fee9a62c1eb711daa1870 *R/findOffspring.R
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9db96596b043d29b63c1b3a03313d968 *R/fixColumnNames.R
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2688142d77ab6fd976133553c0d6fdb2 *R/geneDrop.R
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6a1e9bd1ca331890c357aecc87d29071 *R/getAnimalsWithHighKinship.R
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a832953bb833325bbd39df4c01da1fba *R/getGVGenotype.R
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82082efdb191ab144c55787fd012ffd9 *R/getGeneticDiversityStats.R
291918adb64dccbd640f23a2e1aca225 *R/getGenoDefinedParentGenotypes.R
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8b28db3ff70a5d32d1e060d06e835dd4 *R/getIdsWithOneParent.R
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0fc4660b987853827fc6ee0d0d8defc3 *R/getIndianOriginStatus.R
485efb1c604d3d3b3ab51c1511a0e932 *R/getKinshipWithMaleStatus.R
94b37154ef81941fb107256ef82fafe9 *R/getLivingBreeders.R
17533757a61e9e84c141b28b5e08c234 *R/getLkDirectAncestors.R
35e368ae6709f2d0df7e046ec971d269 *R/getLkDirectRelatives.R
908775ce38b76c3d1268819db0018119 *R/getMaxAx.R
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1cc94f44928ccc68957f965305e6dcf7 *R/getPedigreeSource.R
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64e2d94a36af56a110ee3be72dd3cc6e *R/getPotentialSires.R
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17b2a9db2d9d882f10f2d5325c60450a *R/getPyramidAgeDist.R
17dabca7aebb503657f8654b10b927a8 *R/getPyramidPlot.R
34df0fd743741772a581d1f9f06fd44a *R/getRecordStatusIndex.R
026989788147546cb4538cb0e675d21f *R/getRequiredCols.R
401f05ef810be69301bc5df343fd3ef4 *R/getSexRatioWithAdditions.R
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214436d09ab143bf95228132e4b547ca *R/getSpeciesGestation.R
cfb8ead8f3a558f5783be8a02ea39078 *R/getSpeciesMinBreedingAge.R
445eb5cdfaa051c791a19f74cfb7e0af *R/getSpeciesOverridesPath.R
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4df3a46e34a9ec7f45e24877b8ea81fd *R/groupMembersReturn.R
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