ce95a6e962db8f41141a692ddc5d24eb *DESCRIPTION
d116de6f3ea180c07b88de9dc73fb917 *NAMESPACE
35fcb90a456a96bde286aeaac3966f03 *NEWS.md
3fafa08d73b959595c50a8ced6add40c *R/add_predictors.R
d19600c0d061199b9df49b1641da2557 *R/align_ids.R
352390b1fc9cb809eb78fce133d08048 *R/big_cbind.R
774379515d7f279824089e81a67004eb *R/coef-cv-plmm.R
b08ef99ef4ec3693cf73ed3c17e74473 *R/coef-plmm.R
938003d6df0dcab40e8caef9d3a3ad21 *R/construct_variance.R
bfef0b52886f4acaad50372367f9d227 *R/count_constant_features.R
6189ab4e63e3fbc8739951bd69863081 *R/count_cores.R
73dc822e2f22f244e0c6c76975dacfcc *R/create_design.R
7b00f233e2143351287942abb9591cfc *R/create_design_filebacked.R
39a34467a3ee4336abc68d068c0ce98e *R/create_design_in_memory.R
5382b3207bdc93b61764a100eca6d071 *R/create_log.R
50bc8690ad232d81b9bbd91bc7845a99 *R/cv-plmm.R
c7dd58e9f755e7ad58a57ff2ce65f914 *R/cvf.R
7395d690ee69e09f3e1867504d108e54 *R/data.R
11b962e8038d3cfcabfed25f9c832447 *R/eigen_K.R
7de99e04e2bb114167438a9e9c30c535 *R/estimate_eta.R
523fbadeb022cc224511802d815e68b9 *R/fbm2bm.R
fd60a8d05a5410024967f354b1664bb8 *R/find_example_data.R
fa009c6b667d44766d1dd0f17adce17e *R/get_data.R
b140008e23b88d9859174e2dfa4e37ef *R/get_hostname.R
2ce4a1c42ea1b4cd1020992b49d153ee *R/impute_snp_data.R
0ce5ec1b28315e58409d25a08115437d *R/index_samples.R
f159b618ba9c5cb1dad4f0fd44fee659 *R/lam_names.R
edd219e31afdc41178b3f3f91d443a18 *R/log_lik.R
87b47fff2094a38731fbdfbc00b1636a *R/loss-plmm.R
083ce1046ee23c41063ef898b1d37ddb *R/name_and_count_bigsnp.R
b19828a821003a49ed261c654f86396d *R/penalties.R
8ea98fc9f9844411e68098f2b9866b1b *R/plmm.R
b6422dc327580489aef7578f042adb8d *R/plmm_checks.R
b481211779450b2156b2ccf110fc1fa8 *R/plmm_fit.R
f72487c8956aca9cdb0483d82fe59932 *R/plmm_format.R
88b7c1c335eadbdecef8fca4969f3172 *R/plmm_prep.R
be1f166a3b0aee0f11124e684596e98c *R/plmmr-package.R
5f37fae50b595fb52d064666027a5488 *R/plot-cv-plmm.R
15bbea897123923a6b949d504f737b96 *R/plot-plmm.R
ec65424dc09726465f740ea2251dd31f *R/predict-plmm.R
8fcd3bbe0a00c6d0503012ff8f457ec9 *R/predict_within_cv.R
e17ab15104a7b27cbe0f5d04112109c5 *R/pretty_time.R
5a60f8f62b54924acc1cde5c6d6d9494 *R/print-summary-cv-plmm.R
e608c170f3479bba9cc58a6826a073ee *R/print-summary-plmm.R
6f5818db70f5045a2deb2bf0b64681ce *R/process_delim.R
ef1996a36bf77e3bd91becb36b9887ed *R/process_plink.R
a9f47645a73e87cae2ab6b2fea7e9e3e *R/read_data_files.R
a77fb0f1a983f0f21508ce3004a99f95 *R/read_plink_files.R
3b1803486ddfe09ab6b78bb4c4c79a13 *R/relatedness_mat.R
4b2e0ae6dd59162dad1f4b73718d4a97 *R/rotate_filebacked.R
d8ccd548bc94b2f399a9b719fcd798d2 *R/setup_lambda.R
e4d7e484fc4f65cd02c9315f46d5ed70 *R/standardize_filebacked.R
af3e973ca2db19ea1a6545c184a3fc70 *R/standardize_matrix.R
e1d750147321f7c524ddb98cdf7b620d *R/subset_bigsnp.R
3ec056c364a1d6673cd8bec2ff0d7f50 *R/summary-cv-plmm.R
9d6f651b32cea0640f36b0ed2099da79 *R/summary-plmm.R
f645456c695f483081d9cb0e79e8eba4 *R/untransform.R
846c94d85a85bffd04908a4b69811290 *R/untransform_delim.R
f77c300d2d6fe04e45cd2a0ac775f1b5 *R/untransform_in_memory.R
cd868b3e3b9337bbe434544c5b8c1955 *R/untransform_plink.R
5515c0444f137322a7c0db273a020510 *R/zzz.R
1269e3170b5fb1fe701867be4033cdab *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
560fa82d62be071ce107de902dab6b77 *build/vignette.rds
7121accff35c31ff88eee089bbfd72a7 *data/admix.rda
749a4b246f8352711b65c5e5e96ae544 *inst/CITATION
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3dbb7bbedbf278a3299a1b1cd0c13230 *man/MCP.Rd
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2faa512b2448934de17bb71253f9ecb2 *man/admix.Rd
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77a0148f45cc2f55e18a4701ad49f197 *man/coef.plmm.Rd
25dd468b5dfb8784225e8efb774ce58a *man/construct_variance.Rd
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385b3d0f487b80dc16f9717993c6ad40 *man/count_cores.Rd
2e0401782d8b1cea8c7ac5c5e061f2d1 *man/create_design.Rd
9966fcc98052048358b2be7ca888f6a4 *man/create_design_filebacked.Rd
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5fb77e601e4f6769ad3436e47c7485e1 *man/create_log.Rd
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aa74784b7adc87d15ee9c67da206f9ab *man/fbm2bm.Rd
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dcbe37c7fb56f19c05d3e4841b81f44a *man/get_data.Rd
9d2b74cf9934b30e6686e0034586a89a *man/get_hostname.Rd
93585990fe154dc9b2c62bd72c14eca4 *man/impute_snp_data.Rd
149c5e310345541cbb34a123df5d1d96 *man/index_samples.Rd
c805313af139da2dacd2dc35dc4e9303 *man/lam_names.Rd
5ecebca591af81f00935eaacdd2fbfa2 *man/lasso.Rd
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61dea0ad672cb993b06adb391d854623 *man/plmm_fit.Rd
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28f5a5a4cca1415986310334917e69d7 *man/plmmr-package.Rd
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6ab2b2ab50a79da672f7e1544afeb720 *man/predict.plmm.Rd
ca0993dce85646cfc68ac6b8a2f99056 *man/predict_within_cv.Rd
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4a4b014eee1438306d7ed7ba90f47af0 *man/print.summary.cv_plmm.Rd
98814146168ff2b70792f076e6afb201 *man/print.summary.plmm.Rd
77ec747cc092dbe4fa357fd9829f8d93 *man/process_delim.Rd
28edf287e23a9957a5e91a34db92fdf0 *man/process_plink.Rd
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537779ee245daf0fbc6a377f706c2173 *man/read_plink_files.Rd
6d62d143ba662f5d491faecfa7b7e976 *man/relatedness_mat.Rd
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737e985cf4b5a7b8ecacce3558144f18 *man/setup_lambda.Rd
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83601686de9dd476ffafd60c4c18dafc *man/subset_filebacked.Rd
9597c8e2c68a016ad096d7d318a3ca02 *man/summary.cv_plmm.Rd
9002a03f7709ff5a23a14a6264efb3a4 *man/summary.plmm.Rd
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37b67a67b17f5d41002879e0aa69b2fe *man/untransform_delim.Rd
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b9acc33996425189aec49530f2c06456 *man/unzip_example_data.Rd
e36daf0e2bbc265932539e68a0221aca *src/Makevars
7d63cfb73145573685f48855ec3a1356 *src/big_crossprod.cpp
3f3fb14167f4be94353964cc947a6de6 *src/big_sd.cpp
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11638bd377b58fa7af6b598db23113dc *src/defines.h
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6343d85cba11e26b0c756fe6eae12df8 *src/utilities.cpp
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e0e76ef36e5c58e44b726015641bd0ea *tests/test.R
7d29cd7068e35a337e64f1beabe324da *vignettes/getting-started.Rmd
