Last updated on 2026-08-04 14:51:52 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 2.50 | 123.58 | 126.08 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 1.85 | 99.25 | 101.10 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 200.07 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 94.26 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 6.00 | 192.00 | 198.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 3.02 | 91.42 | 94.44 | ERROR | |
| r-release-linux-x86_64 | 0.1.3 | 2.37 | 60.29 | 62.66 | ERROR | |
| r-release-macos-arm64 | 0.1.3 | 1.00 | 82.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 2.00 | 223.00 | 225.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 7.00 | 82.00 | 89.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.1.3 | 1.00 | 84.00 | 85.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.3 | 2.00 | 157.00 | 159.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 8.00 | 273.00 | 281.00 | OK |
Version: 0.1.3
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp00KFYm’ ‘~/tmp/scratch/Rtmp03FZLh’
‘~/tmp/scratch/Rtmp04rdh6’ ‘~/tmp/scratch/Rtmp08a3ia’
‘~/tmp/scratch/Rtmp0SgILW’ ‘~/tmp/scratch/Rtmp0vleX8’
‘~/tmp/scratch/Rtmp0zmG5y’ ‘~/tmp/scratch/Rtmp1ee5et’
‘~/tmp/scratch/Rtmp23vvTR’ ‘~/tmp/scratch/Rtmp36FNWi’
‘~/tmp/scratch/Rtmp3DBhv8’ ‘~/tmp/scratch/Rtmp3DKopT’
‘~/tmp/scratch/Rtmp3NJE2K’ ‘~/tmp/scratch/Rtmp4y0NuY’
‘~/tmp/scratch/Rtmp5EA3Jb’ ‘~/tmp/scratch/Rtmp5Y2EW5’
‘~/tmp/scratch/Rtmp66zV3f’ ‘~/tmp/scratch/Rtmp68mbMA’
‘~/tmp/scratch/Rtmp6K95Io’ ‘~/tmp/scratch/Rtmp6VFfha’
‘~/tmp/scratch/Rtmp6aIdDB’ ‘~/tmp/scratch/Rtmp6eEVOq’
‘~/tmp/scratch/Rtmp7EkKlT’ ‘~/tmp/scratch/Rtmp7kirAC’
‘~/tmp/scratch/Rtmp82ElQE’ ‘~/tmp/scratch/Rtmp8KFmW6’
‘~/tmp/scratch/Rtmp8ws5o0’ ‘~/tmp/scratch/Rtmp9fGjCW’
‘~/tmp/scratch/RtmpA3eixj’ ‘~/tmp/scratch/RtmpAZEhqD’
‘~/tmp/scratch/RtmpAZvdo3’ ‘~/tmp/scratch/RtmpBsn94A’
‘~/tmp/scratch/RtmpD4tt9R’ ‘~/tmp/scratch/RtmpDHy5l6’
‘~/tmp/scratch/RtmpE7RHdg’ ‘~/tmp/scratch/RtmpEeqPFo’
‘~/tmp/scratch/RtmpH2sgfI’ ‘~/tmp/scratch/RtmpHCtPS0’
‘~/tmp/scratch/RtmpHqqv7S’ ‘~/tmp/scratch/RtmpI6BxFz’
‘~/tmp/scratch/RtmpITzCim’ ‘~/tmp/scratch/RtmpIcmMW7’
‘~/tmp/scratch/RtmpIsVq3i’ ‘~/tmp/scratch/RtmpKchlYi’
‘~/tmp/scratch/RtmpKer2u8’ ‘~/tmp/scratch/RtmpLYUSEe’
‘~/tmp/scratch/RtmpLcEdiu’ ‘~/tmp/scratch/RtmpLnzZbj’
‘~/tmp/scratch/RtmpLskRE9’ ‘~/tmp/scratch/RtmpMm30gA’
‘~/tmp/scratch/RtmpN7wFKg’ ‘~/tmp/scratch/RtmpNNjw4C’
‘~/tmp/scratch/RtmpNYyufE’ ‘~/tmp/scratch/RtmpNtj57e’
‘~/tmp/scratch/RtmpNvKuqi’ ‘~/tmp/scratch/RtmpO3mE49’
‘~/tmp/scratch/RtmpOC167g’ ‘~/tmp/scratch/RtmpOFQuQ5’
‘~/tmp/scratch/RtmpONcZU5’ ‘~/tmp/scratch/RtmpOS1vwg’
‘~/tmp/scratch/RtmpP7CkEl’ ‘~/tmp/scratch/RtmpPkCXFw’
‘~/tmp/scratch/RtmpPsSCx9’ ‘~/tmp/scratch/RtmpQdbORi’
‘~/tmp/scratch/RtmpT1h0jT’ ‘~/tmp/scratch/RtmpTBoTUz’
‘~/tmp/scratch/RtmpTFcTzh’ ‘~/tmp/scratch/RtmpTtOh26’
‘~/tmp/scratch/RtmpTv3w1a’ ‘~/tmp/scratch/RtmpUNN5M3’
‘~/tmp/scratch/RtmpUe1XIr’ ‘~/tmp/scratch/RtmpV2To7c’
‘~/tmp/scratch/RtmpV3usxg’ ‘~/tmp/scratch/RtmpV444NZ’
‘~/tmp/scratch/RtmpWVQofF’ ‘~/tmp/scratch/RtmpWiR5Uq’
‘~/tmp/scratch/RtmpWvqa40’ ‘~/tmp/scratch/RtmpXFiypk’
‘~/tmp/scratch/RtmpYDriQz’ ‘~/tmp/scratch/RtmpaD9oAp’
‘~/tmp/scratch/RtmpaL72IE’ ‘~/tmp/scratch/Rtmpai1uyG’
‘~/tmp/scratch/Rtmpb4SWEl’ ‘~/tmp/scratch/RtmpcTlhip’
‘~/tmp/scratch/RtmpcdAZwB’ ‘~/tmp/scratch/RtmpchujXw’
‘~/tmp/scratch/Rtmpd0eZDb’ ‘~/tmp/scratch/Rtmpd39GTu’
‘~/tmp/scratch/RtmpdDNWSo’ ‘~/tmp/scratch/RtmpdOPlvY’
‘~/tmp/scratch/RtmpdSZlJ3’ ‘~/tmp/scratch/RtmpduSBnp’
‘~/tmp/scratch/RtmpeHPgIC’ ‘~/tmp/scratch/RtmpeKYNFT’
‘~/tmp/scratch/RtmpeZadxU’ ‘~/tmp/scratch/RtmpeaEE2S’
‘~/tmp/scratch/RtmpfwmpB0’ ‘~/tmp/scratch/RtmpgSvPpN’
‘~/tmp/scratch/Rtmph7K0th’ ‘~/tmp/scratch/RtmphUV8sl’
‘~/tmp/scratch/Rtmpi7qwbA’ ‘~/tmp/scratch/RtmpihIVqX’
‘~/tmp/scratch/Rtmpj7Hshr’ ‘~/tmp/scratch/RtmpjJEOkd’
‘~/tmp/scratch/RtmpjnK1ZE’ ‘~/tmp/scratch/Rtmpjxscsk’
‘~/tmp/scratch/RtmpkJ17kP’ ‘~/tmp/scratch/RtmpkvKOUN’
‘~/tmp/scratch/Rtmpl6FxI4’ ‘~/tmp/scratch/RtmpmJzHwJ’
‘~/tmp/scratch/RtmpmxKEQc’ ‘~/tmp/scratch/RtmpnjEi3m’
‘~/tmp/scratch/Rtmpnrw6mU’ ‘~/tmp/scratch/RtmpobGqa3’
‘~/tmp/scratch/RtmppPHds1’ ‘~/tmp/scratch/Rtmppmyk5B’
‘~/tmp/scratch/Rtmpq9R8v0’ ‘~/tmp/scratch/Rtmpqa7Yar’
‘~/tmp/scratch/RtmpqqXo5J’ ‘~/tmp/scratch/Rtmpr6v0Bu’
‘~/tmp/scratch/RtmprajhDT’ ‘~/tmp/scratch/Rtmps3wejy’
‘~/tmp/scratch/RtmpsLajKQ’ ‘~/tmp/scratch/Rtmpse9mck’
‘~/tmp/scratch/RtmptSRO5L’ ‘~/tmp/scratch/RtmptaAug0’
‘~/tmp/scratch/RtmptdnX4h’ ‘~/tmp/scratch/Rtmpu3qVhC’
‘~/tmp/scratch/RtmpuFOc5q’ ‘~/tmp/scratch/RtmpulH10Y’
‘~/tmp/scratch/RtmpumPsXt’ ‘~/tmp/scratch/Rtmpumx4V7’
‘~/tmp/scratch/RtmpvR6Kfg’ ‘~/tmp/scratch/RtmpwfnQ80’
‘~/tmp/scratch/Rtmpwvk0Mn’ ‘~/tmp/scratch/RtmpwvumEQ’
‘~/tmp/scratch/RtmpxsWcJs’ ‘~/tmp/scratch/RtmpxuFwQB’
‘~/tmp/scratch/RtmpxvoZ0f’ ‘~/tmp/scratch/RtmpyeK8kL’
‘~/tmp/scratch/RtmpzcOYjJ’ ‘~/tmp/scratch/RtmpzdeIJt’
‘~/tmp/scratch/RtmpzsphGF’ ‘~/tmp/scratch/ccDlyoRF.s’
‘~/tmp/scratch/quarto-sessione48a53feec0e950d’
‘~/tmp/scratch/xvfb-run.0c5ZYB’ ‘~/tmp/scratch/xvfb-run.2BLZk8’
‘~/tmp/scratch/xvfb-run.2aVkKe’ ‘~/tmp/scratch/xvfb-run.3EHB0O’
‘~/tmp/scratch/xvfb-run.3FFG1L’ ‘~/tmp/scratch/xvfb-run.4PFFmC’
‘~/tmp/scratch/xvfb-run.5D2XvI’ ‘~/tmp/scratch/xvfb-run.6hTk0U’
‘~/tmp/scratch/xvfb-run.7BM5dV’ ‘~/tmp/scratch/xvfb-run.9h13qm’
‘~/tmp/scratch/xvfb-run.ALbGw9’ ‘~/tmp/scratch/xvfb-run.B1Ryl3’
‘~/tmp/scratch/xvfb-run.Bewcgj’ ‘~/tmp/scratch/xvfb-run.BgfzW3’
‘~/tmp/scratch/xvfb-run.C1lmlc’ ‘~/tmp/scratch/xvfb-run.C2DmJH’
‘~/tmp/scratch/xvfb-run.CRTlOe’ ‘~/tmp/scratch/xvfb-run.DxquDk’
‘~/tmp/scratch/xvfb-run.EzMnVS’ ‘~/tmp/scratch/xvfb-run.GuwkMF’
‘~/tmp/scratch/xvfb-run.HVZ6ME’ ‘~/tmp/scratch/xvfb-run.HkactV’
‘~/tmp/scratch/xvfb-run.IPuUgD’ ‘~/tmp/scratch/xvfb-run.LzuSm8’
‘~/tmp/scratch/xvfb-run.MHUP3c’ ‘~/tmp/scratch/xvfb-run.NORnPQ’
‘~/tmp/scratch/xvfb-run.QRICOB’ ‘~/tmp/scratch/xvfb-run.RZGSSq’
‘~/tmp/scratch/xvfb-run.RuXxiU’ ‘~/tmp/scratch/xvfb-run.SmRg5u’
‘~/tmp/scratch/xvfb-run.TGkkxC’ ‘~/tmp/scratch/xvfb-run.Tryfxy’
‘~/tmp/scratch/xvfb-run.UW4AaN’ ‘~/tmp/scratch/xvfb-run.YT9Wfz’
‘~/tmp/scratch/xvfb-run.ZU5dce’ ‘~/tmp/scratch/xvfb-run.btFcqJ’
‘~/tmp/scratch/xvfb-run.cG45AU’ ‘~/tmp/scratch/xvfb-run.cIIqIb’
‘~/tmp/scratch/xvfb-run.d9SQSR’ ‘~/tmp/scratch/xvfb-run.dZRSjh’
‘~/tmp/scratch/xvfb-run.eHVuq2’ ‘~/tmp/scratch/xvfb-run.fTJg54’
‘~/tmp/scratch/xvfb-run.faM3IA’ ‘~/tmp/scratch/xvfb-run.fnd6So’
‘~/tmp/scratch/xvfb-run.gMbynU’ ‘~/tmp/scratch/xvfb-run.gQ3zSi’
‘~/tmp/scratch/xvfb-run.gZxhR3’ ‘~/tmp/scratch/xvfb-run.glucET’
‘~/tmp/scratch/xvfb-run.hlwLvA’ ‘~/tmp/scratch/xvfb-run.j4ehdE’
‘~/tmp/scratch/xvfb-run.j50ZLf’ ‘~/tmp/scratch/xvfb-run.nLnKRd’
‘~/tmp/scratch/xvfb-run.nzyYvU’ ‘~/tmp/scratch/xvfb-run.osxZBG’
‘~/tmp/scratch/xvfb-run.qdEoBh’ ‘~/tmp/scratch/xvfb-run.tdN2RY’
‘~/tmp/scratch/xvfb-run.tge1A5’ ‘~/tmp/scratch/xvfb-run.uFERl7’
‘~/tmp/scratch/xvfb-run.v1BmfX’ ‘~/tmp/scratch/xvfb-run.vEWs7S’
‘~/tmp/scratch/xvfb-run.vKUAKA’ ‘~/tmp/scratch/xvfb-run.vZl05v’
‘~/tmp/scratch/xvfb-run.wNL27I’ ‘~/tmp/scratch/xvfb-run.yl4uK5’
‘~/tmp/scratch/xvfb-run.yoTMdM’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
--- finished re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following file failed:
‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
Quitting from bioutils-case-study.Rmd:72-76 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. └─BioUtils::load.geo.soft("", "GDS507", log.transform = TRUE)
2. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
3. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
4. └─GEOquery:::downloadFile(myurl, destfile, mode)
5. ├─base::tryCatch(...)
6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
9. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bioutils-case-study.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following files failed:
‘bioutils-case-study.Rmd’ ‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'bioutils-case-study.Rmd' using rmarkdown
Quitting from bioutils-case-study.Rmd:72-76 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. └─BioUtils::load.geo.soft("", "GDS507", log.transform = TRUE)
2. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
3. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
4. └─GEOquery:::downloadFile(myurl, destfile, mode)
5. ├─base::tryCatch(...)
6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
9. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bioutils-case-study.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building 'bioutils-case-study.Rmd'
--- re-building 'rcc-visual-analytics.Rmd' using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building 'rcc-visual-analytics.Rmd'
SUMMARY: processing the following files failed:
'bioutils-case-study.Rmd' 'rcc-visual-analytics.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64