Last updated on 2026-01-08 14:50:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | 29.32 | 326.91 | 356.23 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 17.24 | 211.50 | 228.74 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 55.00 | 438.27 | 493.27 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 50.00 | 471.40 | 521.40 | ERROR | |
| r-devel-windows-x86_64 | 0.2.4 | 28.00 | 440.00 | 468.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.4 | 29.11 | 256.85 | 285.96 | ERROR | |
| r-release-linux-x86_64 | 0.2.4 | 24.62 | 259.32 | 283.94 | ERROR | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 17.00 | 423.00 | 440.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 39.00 | 413.00 | 452.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 20.00 | 377.00 | 397.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 50.00 | 536.00 | 586.00 | ERROR |
Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [125s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 17:37:10.839166 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 17:37:14.885158 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 17:37:18.796092 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 17:37:25.540976 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:37:29.059122 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:37:32.423425 gimli2 3474853 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3482049 on localhost:11919 at 17:37:32.833
2026-01-05 17:37:37.216291 gimli2 3474853 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.793 s.
2026-01-05 17:37:37.313059 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:37:41.187397 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:37:44.882318 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 17:37:49.131737 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:37:52.751737 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:37:56.360445 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:37:58.510903 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:37:58.554003 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:38:02.359997 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:02.391895 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:02.428478 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:02.466357 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:02.49845 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:02.5353 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:02.571473 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:02.59814 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:38:06.145725 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
starting worker pid=3489564 on localhost:11919 at 17:38:06.514
starting worker pid=3489563 on localhost:11919 at 17:38:06.620
2026-01-05 17:38:15.60015 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:38:19.20504 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:19.230483 gimli2 3474853 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 17:38:19.234597 gimli2 3474853 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3493171 on localhost:11919 at 17:38:19.633
2026-01-05 17:38:23.922529 gimli2 3474853 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.68599999999999 s.} ...
2026-01-05 17:38:23.924874 gimli2 3474853 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3494076 on localhost:11919 at 17:38:24.324
2026-01-05 17:38:28.025831 gimli2 3474853 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.10100000000001 s.
2026-01-05 17:38:28.028085 gimli2 3474853 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3494986 on localhost:11919 at 17:38:28.522
2026-01-05 17:38:34.080614 gimli2 3474853 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.053 s.
2026-01-05 17:38:34.083931 gimli2 3474853 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.853 s.
2026-01-05 17:38:34.089564 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:34.099823 gimli2 3474853 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 17:38:34.13809 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:34.151738 gimli2 3474853 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 17:38:34.257429 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:34.268487 gimli2 3474853 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 17:38:34.305341 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:38:37.192025 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:37.203069 gimli2 3474853 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 17:38:37.233983 gimli2 3474853 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 32
2026-01-05 17:38:37.242653 gimli2 3474853 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 17:38:37.30741 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 17:38:40.762481 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:38:44.202179 gimli2 3474853 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3499313 on localhost:11919 at 17:38:44.580
2026-01-05 17:38:48.552042 gimli2 3474853 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.349 s.
2026-01-05 17:38:48.554399 gimli2 3474853 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3500510 on localhost:11919 at 17:38:48.930
2026-01-05 17:38:53.698344 gimli2 3474853 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.14399999999999 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 17:38:53.802786 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:38:56.067628 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:38:59.610573 gimli2 3474853 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3503730 on localhost:11919 at 17:39:00.059
2026-01-05 17:39:04.054821 gimli2 3474853 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.444 s.
2026-01-05 17:39:04.109214 gimli2 3474853 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:39:07.786808 gimli2 3474853 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3506699 on localhost:11919 at 17:39:08.109
2026-01-05 17:39:13.846909 gimli2 3474853 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.05800000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [73s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 13:24:19.466663 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 13:24:24.163218 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 13:24:28.859035 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 13:24:37.208458 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:24:40.774426 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:24:44.899648 gimli1 681601 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=703522 on localhost:11360 at 13:24:45.240
2026-01-07 13:24:49.096287 gimli1 681601 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.197 s.
2026-01-07 13:24:49.123286 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:24:52.71522 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:24:56.770869 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 13:25:00.682675 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:04.946095 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:07.336179 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:09.789809 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:09.821629 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:14.022148 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:14.061 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:14.084882 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:14.121364 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:14.152984 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:14.178647 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:14.205038 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:14.233453 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:17.73947 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
starting worker pid=733892 on localhost:11360 at 13:25:18.130
starting worker pid=733893 on localhost:11360 at 13:25:18.184
2026-01-07 13:25:23.958456 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:27.387888 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:27.404313 gimli1 681601 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 13:25:27.407221 gimli1 681601 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=741965 on localhost:11360 at 13:25:27.770
2026-01-07 13:25:31.143276 gimli1 681601 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.732 s.} ...
2026-01-07 13:25:31.144967 gimli1 681601 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=744476 on localhost:11360 at 13:25:31.402
2026-01-07 13:25:34.377383 gimli1 681601 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.233 s.
2026-01-07 13:25:34.379319 gimli1 681601 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=746786 on localhost:11360 at 13:25:34.752
2026-01-07 13:25:38.232091 gimli1 681601 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.852 s.
2026-01-07 13:25:38.233679 gimli1 681601 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 10.829 s.
2026-01-07 13:25:38.240611 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:38.261304 gimli1 681601 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 13:25:38.274713 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:38.293382 gimli1 681601 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 13:25:38.375172 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:38.398007 gimli1 681601 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 13:25:38.414995 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:41.094141 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:41.11122 gimli1 681601 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 13:25:41.126605 gimli1 681601 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-06 r89281), detected cores: 64
2026-01-07 13:25:41.149414 gimli1 681601 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 13:25:41.187076 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 13:25:44.430703 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:47.966374 gimli1 681601 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=760141 on localhost:11360 at 13:25:48.360
2026-01-07 13:25:50.818879 gimli1 681601 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.852 s.
2026-01-07 13:25:50.820554 gimli1 681601 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=763870 on localhost:11360 at 13:25:51.205
2026-01-07 13:25:54.225025 gimli1 681601 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.404 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 13:25:54.265616 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:25:56.687492 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:26:00.256413 gimli1 681601 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=777249 on localhost:11360 at 13:26:00.530
2026-01-07 13:26:02.884798 gimli1 681601 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.628 s.
2026-01-07 13:26:02.899839 gimli1 681601 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 13:26:06.45767 gimli1 681601 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=785436 on localhost:11360 at 13:26:06.714
2026-01-07 13:26:10.589525 gimli1 681601 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.131 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [148s/266s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 09:46:23.709236 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 09:46:34.697957 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 09:46:42.643006 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 09:46:57.969079 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:05.557094 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:13.347102 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3922716 on localhost:11855 at 09:47:13.833
2026-01-05 09:47:21.765285 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 8.41800000000001 s.
2026-01-05 09:47:21.932159 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:30.215089 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:38.425941 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 09:47:47.025972 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:54.951175 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:04.057666 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:08.966644 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:09.012892 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:17.531778 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.621188 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.699775 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.797599 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.885784 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.996089 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:18.048639 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:18.132452 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:27.06988 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
starting worker pid=3928157 on localhost:11855 at 09:48:27.903
starting worker pid=3928159 on localhost:11855 at 09:48:28.020
2026-01-05 09:48:44.310732 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:51.770049 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:51.797215 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:48:51.814903 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3930093 on localhost:11855 at 09:48:52.485
2026-01-05 09:49:02.01143 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 10.189 s.} ...
2026-01-05 09:49:02.022075 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3930753 on localhost:11855 at 09:49:02.756
2026-01-05 09:49:11.746874 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.72499999999999 s.
2026-01-05 09:49:11.7516 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3931201 on localhost:11855 at 09:49:12.389
2026-01-05 09:49:19.912603 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 8.16 s.
2026-01-05 09:49:19.919873 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 28.123 s.
2026-01-05 09:49:19.937478 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:19.976138 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:20.038899 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:20.064098 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:20.267375 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:20.293799 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:20.343469 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:49:26.151195 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:26.181562 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:26.20961 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:26.230101 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:26.358172 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 09:49:36.310678 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:49:43.297617 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3932155 on localhost:11855 at 09:49:43.831
2026-01-05 09:49:52.963407 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.66499999999999 s.
2026-01-05 09:49:52.967907 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3932443 on localhost:11855 at 09:49:53.533
2026-01-05 09:50:02.254054 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 9.286 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 09:50:02.362058 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:50:07.716729 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:50:15.84552 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3934311 on localhost:11855 at 09:50:16.452
2026-01-05 09:50:23.208552 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 7.363 s.
2026-01-05 09:50:23.265082 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:50:30.776981 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3935002 on localhost:11855 at 09:50:31.266
2026-01-05 09:50:41.025531 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 10.244 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [142s/346s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-03 08:34:06.73367 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-03 08:34:20.269132 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-03 08:34:30.62967 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-03 08:34:47.635888 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:34:57.988268 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:08.016407 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1195763 on localhost:11437 at 08:35:08.561
2026-01-03 08:35:17.350611 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.33399999999999 s.
2026-01-03 08:35:17.547488 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:26.491516 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:35.733676 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-03 08:35:46.098705 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:55.270946 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:02.375742 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:08.468615 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:08.515654 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:18.895044 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:18.951343 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.008601 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.119817 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.189037 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.246526 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.309588 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.387205 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:30.648525 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
starting worker pid=1204902 on localhost:11437 at 08:36:31.437
starting worker pid=1204903 on localhost:11437 at 08:36:31.474
2026-01-03 08:36:56.776655 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:09.87984 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:09.964198 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:10.011706 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1214291 on localhost:11437 at 08:37:10.686
2026-01-03 08:37:22.126932 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 12.103 s.} ...
2026-01-03 08:37:22.135026 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1215630 on localhost:11437 at 08:37:22.953
2026-01-03 08:37:34.873498 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.739 s.
2026-01-03 08:37:34.878176 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1217201 on localhost:11437 at 08:37:35.401
2026-01-03 08:37:49.107587 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 14.23 s.
2026-01-03 08:37:49.115177 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 39.151 s.
2026-01-03 08:37:49.131002 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.155499 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.20553 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.229289 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.339863 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.363846 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.414392 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:56.6043 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.633393 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.68298 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.71309 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.833935 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-03 08:38:07.282704 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:18.375271 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1221451 on localhost:11437 at 08:38:19.028
2026-01-03 08:38:30.977238 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.601 s.
2026-01-03 08:38:30.981696 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1223815 on localhost:11437 at 08:38:31.976
2026-01-03 08:38:44.627997 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 13.646 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-03 08:38:44.84637 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:53.749221 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:04.146436 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1228863 on localhost:11437 at 08:39:04.873
2026-01-03 08:39:17.105902 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.959 s.
2026-01-03 08:39:17.167503 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:28.738544 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1232048 on localhost:11437 at 08:39:29.330
2026-01-03 08:39:40.705118 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 11.963 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [145s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 09:45:00.377953 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 09:45:06.579208 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 09:45:12.089938 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 09:45:20.893808 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:26.706987 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:32.390597 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=64548 on localhost:11519 at 09:45:32.636
2026-01-07 09:45:35.313287 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.92 s.
2026-01-07 09:45:35.359963 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:40.810236 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:46.427722 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 09:45:51.995621 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:57.396928 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:00.659471 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:04.628317 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:04.638464 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:10.41802 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.431782 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.446358 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.461432 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.476509 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.491818 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.507116 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.524061 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:16.122667 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
starting worker pid=35092 on localhost:11519 at 09:46:16.394
starting worker pid=61180 on localhost:11519 at 09:46:16.394
2026-01-07 09:46:23.464277 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:29.535601 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:29.538266 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:29.542183 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=103296 on localhost:11519 at 09:46:29.820
2026-01-07 09:46:32.704279 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.14999999999999 s.} ...
2026-01-07 09:46:32.706837 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=107688 on localhost:11519 at 09:46:32.959
2026-01-07 09:46:35.261713 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.57000000000001 s.
2026-01-07 09:46:35.265539 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=45152 on localhost:11519 at 09:46:35.506
2026-01-07 09:46:38.801665 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.53 s.
2026-01-07 09:46:38.804796 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.26000000000001 s.
2026-01-07 09:46:38.809965 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.813043 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.827097 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.829845 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.86132 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.864485 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.879274 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:43.509154 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:43.511426 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:43.521788 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:43.524313 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:43.555696 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 09:46:48.462633 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:53.787782 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=14444 on localhost:11519 at 09:46:54.054
2026-01-07 09:46:56.720936 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.92 s.
2026-01-07 09:46:56.723528 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=64252 on localhost:11519 at 09:46:56.969
2026-01-07 09:46:59.742616 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.03 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 09:46:59.799379 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:04.318071 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:10.139357 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=70692 on localhost:11519 at 09:47:10.395
2026-01-07 09:47:13.157881 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.02000000000001 s.
2026-01-07 09:47:13.19039 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:18.512842 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=45608 on localhost:11519 at 09:47:18.729
2026-01-07 09:47:21.928186 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.42000000000002 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/152s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 05:52:14.359857 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 05:52:20.045834 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 05:52:25.392892 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 05:52:34.357755 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:39.072313 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:43.563875 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3394364 on localhost:11956 at 05:52:43.935
2026-01-07 05:52:47.861479 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.297 s.
2026-01-07 05:52:47.951594 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:52.307539 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:57.765159 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 05:53:03.313407 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:08.207243 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:12.353824 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:15.707112 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:15.73402 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:20.245301 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.276569 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.297124 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.33072 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.354787 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.388278 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.429523 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.471643 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:24.65668 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
starting worker pid=3404209 on localhost:11956 at 05:53:24.972
starting worker pid=3404208 on localhost:11956 at 05:53:25.098
2026-01-07 05:53:33.402274 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:38.005343 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:38.013165 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:38.020826 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3407430 on localhost:11956 at 05:53:38.423
2026-01-07 05:53:43.297664 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.27500000000001 s.} ...
2026-01-07 05:53:43.300836 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3408703 on localhost:11956 at 05:53:43.714
2026-01-07 05:53:47.290467 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.98899999999999 s.
2026-01-07 05:53:47.292852 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3410376 on localhost:11956 at 05:53:47.670
2026-01-07 05:53:52.94118 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.64800000000001 s.
2026-01-07 05:53:52.943611 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.931 s.
2026-01-07 05:53:52.948986 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:52.963566 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:52.983352 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:52.992322 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:53.058511 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:53.067342 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:53.093966 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:56.814679 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:56.827197 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:56.852689 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:56.865293 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:56.929239 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 05:54:02.274351 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:07.719117 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3415269 on localhost:11956 at 05:54:08.123
2026-01-07 05:54:12.190488 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.471 s.
2026-01-07 05:54:12.192771 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3416351 on localhost:11956 at 05:54:12.611
2026-01-07 05:54:16.895272 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.702 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 05:54:16.960993 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:20.649861 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:25.366387 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3419951 on localhost:11956 at 05:54:25.696
2026-01-07 05:54:29.361293 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.995 s.
2026-01-07 05:54:29.415876 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:34.66923 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3422324 on localhost:11956 at 05:54:35.178
2026-01-07 05:54:41.229543 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.55700000000002 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/160s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-03 05:44:29.082076 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-03 05:44:34.806196 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-03 05:44:39.875712 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-03 05:44:49.355435 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:44:54.18401 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:44:59.041965 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3976251 on localhost:11408 at 05:44:59.513
2026-01-03 05:45:03.667814 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.626 s.
2026-01-03 05:45:03.762693 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:08.497214 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:14.152887 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-03 05:45:20.237874 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:25.662703 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:29.65236 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:33.023897 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:33.060222 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:38.085997 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.105462 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.138207 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.173842 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.21122 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.246883 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.276348 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.300142 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:43.258345 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
starting worker pid=3987415 on localhost:11408 at 05:45:43.802
starting worker pid=3987414 on localhost:11408 at 05:45:43.816
2026-01-03 05:45:52.363297 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:57.541566 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:57.555188 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:45:57.559301 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3990961 on localhost:11408 at 05:45:57.976
2026-01-03 05:46:02.385395 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.81999999999999 s.} ...
2026-01-03 05:46:02.387968 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3992179 on localhost:11408 at 05:46:02.793
2026-01-03 05:46:07.312619 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.925 s.
2026-01-03 05:46:07.315118 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3993786 on localhost:11408 at 05:46:07.697
2026-01-03 05:46:12.376384 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.06099999999999 s.
2026-01-03 05:46:12.378369 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.823 s.
2026-01-03 05:46:12.38217 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.394746 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.416452 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.430821 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.501802 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.51537 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.546135 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:16.437677 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:16.448217 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:16.478409 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:16.491296 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:16.520907 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-03 05:46:22.84798 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:28.499179 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3999710 on localhost:11408 at 05:46:28.961
2026-01-03 05:46:34.219338 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.72 s.
2026-01-03 05:46:34.229123 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=4000963 on localhost:11408 at 05:46:34.610
2026-01-03 05:46:39.4661 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.245 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-03 05:46:39.53447 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:43.184434 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:48.122644 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=4003547 on localhost:11408 at 05:46:48.533
2026-01-03 05:46:52.617395 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.495 s.
2026-01-03 05:46:52.67356 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:57.375579 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=4007188 on localhost:11408 at 05:46:57.864
2026-01-03 05:47:03.341136 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.96000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [146s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 09:21:17.114046 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 09:21:22.963045 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 09:21:28.917937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 09:21:37.906501 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:43.295393 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:48.5217 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=27524 on localhost:11772 at 09:21:48.807
2026-01-07 09:21:51.492925 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.97000000000001 s.
2026-01-07 09:21:51.572678 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:57.483563 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:03.252271 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 09:22:09.361009 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:14.96016 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:18.549809 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:23.108796 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:23.122847 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:28.440489 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.452898 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.461225 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.471676 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.480077 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.489696 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.500732 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.516936 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:33.534709 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
starting worker pid=82400 on localhost:11772 at 09:22:33.801
starting worker pid=33968 on localhost:11772 at 09:22:33.852
2026-01-07 09:22:40.92937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:46.552524 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:46.555454 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:46.559623 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=99404 on localhost:11772 at 09:22:46.820
2026-01-07 09:22:49.623891 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.05999999999999 s.} ...
2026-01-07 09:22:49.626153 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=105556 on localhost:11772 at 09:22:49.878
2026-01-07 09:22:52.388816 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s.
2026-01-07 09:22:52.391919 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=76496 on localhost:11772 at 09:22:52.702
2026-01-07 09:22:56.076346 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.68000000000001 s.
2026-01-07 09:22:56.079143 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.53 s.
2026-01-07 09:22:56.083799 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.086699 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.099104 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.101404 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.143046 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.145554 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.157861 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:00.46251 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:23:00.465065 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:23:00.476378 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:23:00.479095 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:23:00.517118 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 09:23:05.955452 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:11.266958 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=107288 on localhost:11772 at 09:23:11.526
2026-01-07 09:23:14.0467 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.78 s.
2026-01-07 09:23:14.049096 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=27816 on localhost:11772 at 09:23:14.321
2026-01-07 09:23:17.215913 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.16 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 09:23:17.269341 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:21.954476 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:27.52312 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57564 on localhost:11772 at 09:23:27.794
2026-01-07 09:23:30.289776 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.77000000000001 s.
2026-01-07 09:23:30.317935 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:35.670567 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=87672 on localhost:11772 at 09:23:35.908
2026-01-07 09:23:39.186142 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.5 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [206s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 16:57:23.62878 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 16:57:32.82465 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 16:57:41.360011 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 16:57:52.975546 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:01.455334 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:09.93103 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=26956 on localhost:11044 at 16:58:10.276
2026-01-05 16:58:13.740134 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.81 s.
2026-01-05 16:58:13.806471 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:21.393564 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:29.374142 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 16:58:37.271728 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:44.88705 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:49.915431 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:56.499752 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:56.512752 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:04.740577 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.756815 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.773356 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.791154 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.808977 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.826021 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.843517 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.857898 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:13.496917 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=80984 on localhost:11044 at 16:59:13.810
starting worker pid=84680 on localhost:11044 at 16:59:13.889
2026-01-05 16:59:23.145014 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:31.432715 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:31.43565 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:31.440607 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=11840 on localhost:11044 at 16:59:31.767
2026-01-05 16:59:35.084238 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.64000000000001 s.} ...
2026-01-05 16:59:35.08664 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=21596 on localhost:11044 at 16:59:35.437
2026-01-05 16:59:38.869814 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.78 s.
2026-01-05 16:59:38.872782 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=61816 on localhost:11044 at 16:59:39.139
2026-01-05 16:59:43.150226 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.28 s.
2026-01-05 16:59:43.15355 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 11.71 s.
2026-01-05 16:59:43.16102 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.165756 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.184282 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.18671 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.224996 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.229204 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.245437 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:50.067591 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.07189 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.091592 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.096234 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.145882 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 16:59:57.978731 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:05.671469 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=40176 on localhost:11044 at 17:00:05.955
2026-01-05 17:00:09.651378 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.96000000000001 s.
2026-01-05 17:00:09.654629 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=111168 on localhost:11044 at 17:00:10.016
2026-01-05 17:00:14.191393 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.54999999999998 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 17:00:14.24468 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:20.969078 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:28.496578 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=104596 on localhost:11044 at 17:00:28.779
2026-01-05 17:00:32.33652 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.84 s.
2026-01-05 17:00:32.373872 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:40.090548 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=66204 on localhost:11044 at 17:00:40.410
2026-01-05 17:00:44.82498 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.72 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64