Last updated on 2025-09-11 21:51:01 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 8.70 | 183.63 | 192.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 7.57 | 115.27 | 122.84 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 311.13 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 308.39 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 12.00 | 213.00 | 225.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 7.32 | 171.19 | 178.51 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 7.63 | 168.62 | 176.25 | OK | |
| r-release-macos-arm64 | 1.0.0 | 87.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 7.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.0 | 12.00 | 214.00 | 226.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 94.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 201.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 16.00 | 254.00 | 270.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PopPsiSeqR)
>
> test_check("PopPsiSeqR")
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 9 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot.R:26:5'): returns a plot ────────────────────────────────
Expected `mock.plot <- windowedFrequencyShift.plotter(mock_data)` to run without any errors.
i Actually got a <simpleError> with text:
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
── Error ('test-plot.R:27:5'): returns a plot ──────────────────────────────────
Error in `eval(code, test_env)`: object 'mock.plot' not found
Backtrace:
▆
1. ├─testthat::expect_true(ggplot2::is.ggplot(mock.plot@ggplot)) at test-plot.R:27:5
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ggplot2::is.ggplot(mock.plot@ggplot)
5. └─ggplot2::is_ggplot(x)
6. └─S7::S7_inherits(x, class_ggplot)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 9 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘PopPsiSeq_and_Helpers.Rmd’ using rmarkdown
Quitting from PopPsiSeq_and_Helpers.Rmd:120-124 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `validObject()`:
! invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
---
Backtrace:
x
1. +-ggplot2::autoplot(...)
2. \-ggbio::autoplot(...)
3. \-ggbio (local) .local(object, ...)
4. +-BiocGenerics::do.call(ggplot, c(list(data = object), list(aes.res)))
5. +-base::do.call(ggplot, c(list(data = object), list(aes.res)))
6. +-ggplot2 (local) `<fn>`(data = `<GRanges>`, `<ggplt2::>`)
7. \-ggbio:::ggplot.Vector(data = `<GRanges>`, `<ggplt2::>`)
8. \-ggbio::GGbio(gg, data = data)
9. +-BiocGenerics::do.call(...)
10. +-base::do.call(...)
11. \-methods (local) `<fn>`(...)
12. +-methods::initialize(value, ...)
13. \-methods::initialize(value, ...)
14. \-methods::validObject(.Object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PopPsiSeq_and_Helpers.Rmd' failed with diagnostics:
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
--- failed re-building ‘PopPsiSeq_and_Helpers.Rmd’
SUMMARY: processing the following file failed:
‘PopPsiSeq_and_Helpers.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggbio’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64