Last updated on 2024-06-27 16:49:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.4 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 3.4 | 31.54 | 115.63 | 147.17 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.4 | 253.40 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.4 | 240.60 | OK | |||
| r-devel-windows-x86_64 | 3.4 | 33.00 | 138.00 | 171.00 | OK | |
| r-patched-linux-x86_64 | 3.4 | 36.79 | 150.66 | 187.45 | OK | |
| r-release-linux-x86_64 | 3.4 | 43.38 | 150.12 | 193.50 | OK | |
| r-release-macos-arm64 | 3.4 | 63.00 | OK | |||
| r-release-macos-x86_64 | 3.4 | 112.00 | OK | |||
| r-release-windows-x86_64 | 3.4 | 38.00 | 138.00 | 176.00 | OK | |
| r-oldrel-macos-arm64 | 3.4 | 72.00 | OK | |||
| r-oldrel-macos-x86_64 | 3.4 | 125.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.4 | 50.00 | 175.00 | 225.00 | NOTE |
Version: 3.4
Check: examples
Result: ERROR
Running examples in ‘QTL.gCIMapping-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ZhouMethod_single_env
> ### Title: The second step of Zhou method for single environment
> ### Aliases: ZhouMethod_single_env
>
> ### ** Examples
>
> data(F2data)
> readraw<-Readdata(file=F2data,fileFormat="GCIM",
+ method="GCIM-QEI",filecov=NULL,
+ MCIMmap=NULL,MultiEnv=FALSE)
> DoResult<-Dodata(fileFormat="GCIM",Population="F2",
+ method="GCIM-QEI",Model="Random",
+ readraw,MultiEnv=FALSE)
> ZhouMatrices<-ZhouF(pheRaw=DoResult$pheRaw,
+ genRaw=DoResult$genRaw,mapRaw1=DoResult$mapRaw1,
+ WalkSpeed=1,CriLOD=3,dir=tempdir())
--Read the following data:
49 individuals
100 markers
4 phenotypes
--Cross type: f2
> OutputZhou<-ZhouMethod_single_env(Model="Random",
+ pheRaw=DoResult$pheRaw,genRaw=DoResult$genRaw,
+ mapRaw=ZhouMatrices$mapRaw,CriLOD=3,NUM=1,
+ yygg=DoResult$yygg1,genoname=ZhouMatrices$genoname,
+ Ax0=ZhouMatrices$Ax0,Hx0=ZhouMatrices$Hx0,
+ Bx0=ZhouMatrices$Bx0,Ax=ZhouMatrices$Ax,
+ Hx=ZhouMatrices$Hx,Bx=ZhouMatrices$Bx,
+ dir=tempdir(),CriDis=5,CLO=2)
Error in serverSocket(port = port) :
creation of server socket failed: port 11801 cannot be opened
Calls: ZhouMethod_single_env ... single_locus_model -> makeCluster -> makePSOCKcluster -> serverSocket
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
WenS 7.716 0.159 10.324
QTL.gCIMapping 1.383 0.210 7.739
ZhouMethod 1.066 0.126 8.123
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.4
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
extdata 3.0Mb
libs 1.0Mb
Flavor: r-oldrel-windows-x86_64