Last updated on 2026-08-04 14:52:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.4.0 | 86.42 | 194.46 | 280.88 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.4.0 | 64.54 | 131.16 | 195.70 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.4.0 | 131.00 | 297.10 | 428.10 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.4.0 | 87.00 | 136.17 | 223.17 | NOTE | |
| r-devel-windows-x86_64 | 2.4.0 | 109.00 | 223.00 | 332.00 | NOTE | |
| r-patched-linux-x86_64 | 2.4.0 | 94.53 | 176.43 | 270.96 | OK | |
| r-release-linux-x86_64 | 2.4.0 | 100.00 | 178.26 | 278.26 | OK | |
| r-release-macos-arm64 | 2.4.0 | 21.00 | 53.00 | 74.00 | OK | |
| r-release-macos-x86_64 | 2.4.0 | 60.00 | 186.00 | 246.00 | OK | |
| r-release-windows-x86_64 | 2.4.0 | 107.00 | 324.00 | 431.00 | OK | |
| r-oldrel-macos-arm64 | 2.4.0 | 17.00 | 50.00 | 67.00 | WARN | |
| r-oldrel-macos-x86_64 | 2.4.0 | 62.00 | 155.00 | 217.00 | OK | |
| r-oldrel-windows-x86_64 | 2.4.0 | 139.00 | 304.00 | 443.00 | OK |
Version: 2.4.0
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
TreeTools/tests/testthat/test-AddTip.R (.Dim: 1)
TreeTools/tests/testthat/test-DropTip.R (.Dim: 3)
TreeTools/tests/testthat/test-ImposeConstraint.R (.Dim: 1, .Dimnames: 1)
TreeTools/tests/testthat/test-ReadTntTree.R (.Dim: 1, .Dimnames: 1)
TreeTools/tests/testthat/test-Splits.R (.Dim: 8)
TreeTools/tests/testthat/test-TotalCopheneticIndex.R (.Dim: 1)
TreeTools/tests/testthat/test-consensus.R (.Dim: 1)
TreeTools/tests/testthat/test-parsers.R (.Dim: 1, .Dimnames: 1, .Label: 1)
TreeTools/tests/testthat/test-phylo.R (.Dim: 1)
TreeTools/tests/testthat/test-tree_numbering.R (.Dim: 5)
TreeTools/tests/testthat/test-tree_properties.R (.Dim: 1)
TreeTools/tests/testthat/test-tree_rearrange.R (.Dim: 11)
TreeTools/tests/testthat/test-tree_shape.R (.Dim: 1)
TreeTools/tests/testthat/test-tree_write.R (.Dim: 1)
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.
'.Label' should be changed to 'levels'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.4.0
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp054mQ0’ ‘~/tmp/scratch/Rtmp1gPZBf’
‘~/tmp/scratch/Rtmp1juatb’ ‘~/tmp/scratch/Rtmp1kTC4Q’
‘~/tmp/scratch/Rtmp1rKYkD’ ‘~/tmp/scratch/Rtmp2NrWiy’
‘~/tmp/scratch/Rtmp3FubGy’ ‘~/tmp/scratch/Rtmp3OIAf8’
‘~/tmp/scratch/Rtmp3fDlGq’ ‘~/tmp/scratch/Rtmp3pornq’
‘~/tmp/scratch/Rtmp4lCc4j’ ‘~/tmp/scratch/Rtmp5GPxU0’
‘~/tmp/scratch/Rtmp5R3CHe’ ‘~/tmp/scratch/Rtmp5gnkaF’
‘~/tmp/scratch/Rtmp61977G’ ‘~/tmp/scratch/Rtmp65oUhS’
‘~/tmp/scratch/Rtmp6UK7YW’ ‘~/tmp/scratch/Rtmp6dD0jG’
‘~/tmp/scratch/Rtmp6vRMyz’ ‘~/tmp/scratch/Rtmp77vXyc’
‘~/tmp/scratch/Rtmp7yJYQM’ ‘~/tmp/scratch/Rtmp80vRPp’
‘~/tmp/scratch/Rtmp8LKb41’ ‘~/tmp/scratch/Rtmp8a0zMS’
‘~/tmp/scratch/Rtmp9BZwZF’ ‘~/tmp/scratch/Rtmp9Kkp0h’
‘~/tmp/scratch/Rtmp9MUQLz’ ‘~/tmp/scratch/RtmpA0x9Yn’
‘~/tmp/scratch/RtmpA4ux33’ ‘~/tmp/scratch/RtmpAcEckO’
‘~/tmp/scratch/RtmpDc8UGE’ ‘~/tmp/scratch/RtmpDm4lmQ’
‘~/tmp/scratch/RtmpDqKnZg’ ‘~/tmp/scratch/RtmpE81wpQ’
‘~/tmp/scratch/RtmpEdtbDD’ ‘~/tmp/scratch/RtmpGDMvZi’
‘~/tmp/scratch/RtmpGQHX7n’ ‘~/tmp/scratch/RtmpHKwmgZ’
‘~/tmp/scratch/RtmpHz188F’ ‘~/tmp/scratch/RtmpID5XKF’
‘~/tmp/scratch/RtmpIQrwzW’ ‘~/tmp/scratch/RtmpIWtIQD’
‘~/tmp/scratch/RtmpIdYKyO’ ‘~/tmp/scratch/RtmpJ1KKvO’
‘~/tmp/scratch/RtmpJVkBcq’ ‘~/tmp/scratch/RtmpKIqmrS’
‘~/tmp/scratch/RtmpKdwBU7’ ‘~/tmp/scratch/RtmpMLlKdB’
‘~/tmp/scratch/RtmpN1OvfD’ ‘~/tmp/scratch/RtmpN7PUxc’
‘~/tmp/scratch/RtmpNF2AbX’ ‘~/tmp/scratch/RtmpOalnwo’
‘~/tmp/scratch/RtmpOxydiH’ ‘~/tmp/scratch/RtmpP5TLif’
‘~/tmp/scratch/RtmpP6yjxL’ ‘~/tmp/scratch/RtmpPIsCyf’
‘~/tmp/scratch/RtmpPkMHBK’ ‘~/tmp/scratch/RtmpQWTM7x’
‘~/tmp/scratch/RtmpQr65kQ’ ‘~/tmp/scratch/RtmpQxI7ML’
‘~/tmp/scratch/RtmpRrx44E’ ‘~/tmp/scratch/RtmpRyxQqG’
‘~/tmp/scratch/RtmpS466HA’ ‘~/tmp/scratch/RtmpT5yBzk’
‘~/tmp/scratch/RtmpTSqLdE’ ‘~/tmp/scratch/RtmpTWDH7K’
‘~/tmp/scratch/RtmpTzgZwB’ ‘~/tmp/scratch/RtmpV2mxBZ’
‘~/tmp/scratch/RtmpVAX1yh’ ‘~/tmp/scratch/RtmpVvo7JT’
‘~/tmp/scratch/RtmpW36WhI’ ‘~/tmp/scratch/RtmpW4WZXG’
‘~/tmp/scratch/RtmpXTPXqY’ ‘~/tmp/scratch/RtmpXlX2gH’
‘~/tmp/scratch/RtmpYJOMhz’ ‘~/tmp/scratch/RtmpYWSyzG’
‘~/tmp/scratch/RtmpYe5yud’ ‘~/tmp/scratch/RtmpYfQ9pc’
‘~/tmp/scratch/RtmpYpGcPi’ ‘~/tmp/scratch/RtmpZ828MW’
‘~/tmp/scratch/RtmpZAXzTB’ ‘~/tmp/scratch/RtmpZefIQB’
‘~/tmp/scratch/RtmpZgjiGg’ ‘~/tmp/scratch/RtmpZw8SyT’
‘~/tmp/scratch/Rtmpc7Qs1o’ ‘~/tmp/scratch/RtmpcajOlc’
‘~/tmp/scratch/RtmpcgrVjm’ ‘~/tmp/scratch/RtmpdOnPAE’
‘~/tmp/scratch/RtmpdqBADG’ ‘~/tmp/scratch/RtmpeLcgpQ’
‘~/tmp/scratch/RtmpeS42ri’ ‘~/tmp/scratch/RtmpeXBco1’
‘~/tmp/scratch/RtmpeYm8xw’ ‘~/tmp/scratch/RtmpfR06mk’
‘~/tmp/scratch/RtmpgeiY0y’ ‘~/tmp/scratch/Rtmph1cTcc’
‘~/tmp/scratch/RtmphNWzuq’ ‘~/tmp/scratch/RtmphOEwrh’
‘~/tmp/scratch/RtmpiBsJ3p’ ‘~/tmp/scratch/RtmpiPAUbK’
‘~/tmp/scratch/RtmpiSiwME’ ‘~/tmp/scratch/Rtmpic1Gol’
‘~/tmp/scratch/RtmpicbsAz’ ‘~/tmp/scratch/RtmpihTY6A’
‘~/tmp/scratch/RtmpikjqNp’ ‘~/tmp/scratch/RtmpjJ3AIs’
‘~/tmp/scratch/RtmpjvmqJF’ ‘~/tmp/scratch/RtmpkTbhfE’
‘~/tmp/scratch/RtmpkjqVuU’ ‘~/tmp/scratch/Rtmpl8ytip’
‘~/tmp/scratch/RtmplFYlE7’ ‘~/tmp/scratch/RtmplWRybO’
‘~/tmp/scratch/Rtmplt2GQt’ ‘~/tmp/scratch/Rtmpmc9Xsl’
‘~/tmp/scratch/Rtmpn6kA6v’ ‘~/tmp/scratch/RtmpnLvNU0’
‘~/tmp/scratch/RtmpnPZGhU’ ‘~/tmp/scratch/RtmpnvdEAz’
‘~/tmp/scratch/RtmpoUyGCs’ ‘~/tmp/scratch/Rtmpoutuu6’
‘~/tmp/scratch/RtmppWGsP3’ ‘~/tmp/scratch/RtmpqEOsNQ’
‘~/tmp/scratch/RtmpqMQFcy’ ‘~/tmp/scratch/RtmpqVbAIL’
‘~/tmp/scratch/RtmpqZxYfs’ ‘~/tmp/scratch/RtmpqpCAsA’
‘~/tmp/scratch/RtmprW9xw5’ ‘~/tmp/scratch/RtmproHQtM’
‘~/tmp/scratch/RtmpsNf8tI’ ‘~/tmp/scratch/RtmpsUxw22’
‘~/tmp/scratch/RtmpsiZO0V’ ‘~/tmp/scratch/Rtmptx4RIG’
‘~/tmp/scratch/RtmpugBANq’ ‘~/tmp/scratch/Rtmpv6WEMI’
‘~/tmp/scratch/RtmpvYBabv’ ‘~/tmp/scratch/Rtmpvqg6Pn’
‘~/tmp/scratch/RtmpwLEryr’ ‘~/tmp/scratch/RtmpwLsFOU’
‘~/tmp/scratch/RtmpxRPS4g’ ‘~/tmp/scratch/RtmpxUs76b’
‘~/tmp/scratch/RtmpySYijs’ ‘~/tmp/scratch/RtmpydifnG’
‘~/tmp/scratch/quarto-sessionb820c155debd841a’
‘~/tmp/scratch/xvfb-run.0uVX9R’ ‘~/tmp/scratch/xvfb-run.0zYH2R’
‘~/tmp/scratch/xvfb-run.1ZWrnK’ ‘~/tmp/scratch/xvfb-run.2tdKQk’
‘~/tmp/scratch/xvfb-run.3mtkfe’ ‘~/tmp/scratch/xvfb-run.46HsMZ’
‘~/tmp/scratch/xvfb-run.4cs9mR’ ‘~/tmp/scratch/xvfb-run.5V7cj5’
‘~/tmp/scratch/xvfb-run.6d6MuE’ ‘~/tmp/scratch/xvfb-run.77iRwx’
‘~/tmp/scratch/xvfb-run.7WCRQA’ ‘~/tmp/scratch/xvfb-run.8YPMP8’
‘~/tmp/scratch/xvfb-run.9fJcwy’ ‘~/tmp/scratch/xvfb-run.9oUbWu’
‘~/tmp/scratch/xvfb-run.9xYZV8’ ‘~/tmp/scratch/xvfb-run.AVDkvC’
‘~/tmp/scratch/xvfb-run.BQftxN’ ‘~/tmp/scratch/xvfb-run.CxmCuD’
‘~/tmp/scratch/xvfb-run.HOkctK’ ‘~/tmp/scratch/xvfb-run.Hu5Mwb’
‘~/tmp/scratch/xvfb-run.IAVtSW’ ‘~/tmp/scratch/xvfb-run.J6ILTu’
‘~/tmp/scratch/xvfb-run.JDJv8O’ ‘~/tmp/scratch/xvfb-run.Kutc9a’
‘~/tmp/scratch/xvfb-run.LYjR2g’ ‘~/tmp/scratch/xvfb-run.Mf56UB’
‘~/tmp/scratch/xvfb-run.OeRPl2’ ‘~/tmp/scratch/xvfb-run.PEwjJV’
‘~/tmp/scratch/xvfb-run.RYJ9GZ’ ‘~/tmp/scratch/xvfb-run.RZtp8H’
‘~/tmp/scratch/xvfb-run.RqKJSH’ ‘~/tmp/scratch/xvfb-run.WDPWYS’
‘~/tmp/scratch/xvfb-run.Wck4Yw’ ‘~/tmp/scratch/xvfb-run.WdAfvb’
‘~/tmp/scratch/xvfb-run.Wsv8CW’ ‘~/tmp/scratch/xvfb-run.WzTxIW’
‘~/tmp/scratch/xvfb-run.ad7XF9’ ‘~/tmp/scratch/xvfb-run.anIpmS’
‘~/tmp/scratch/xvfb-run.ctq1hv’ ‘~/tmp/scratch/xvfb-run.eemPF4’
‘~/tmp/scratch/xvfb-run.ei6UEH’ ‘~/tmp/scratch/xvfb-run.f2beCM’
‘~/tmp/scratch/xvfb-run.gAoWwa’ ‘~/tmp/scratch/xvfb-run.gFMfwr’
‘~/tmp/scratch/xvfb-run.hkpmKP’ ‘~/tmp/scratch/xvfb-run.k6DqgV’
‘~/tmp/scratch/xvfb-run.kF73iz’ ‘~/tmp/scratch/xvfb-run.l6atPo’
‘~/tmp/scratch/xvfb-run.lkEdPn’ ‘~/tmp/scratch/xvfb-run.ltNt1C’
‘~/tmp/scratch/xvfb-run.nGConC’ ‘~/tmp/scratch/xvfb-run.omA1sH’
‘~/tmp/scratch/xvfb-run.oupcWP’ ‘~/tmp/scratch/xvfb-run.u0T9Ij’
‘~/tmp/scratch/xvfb-run.u5zxYc’ ‘~/tmp/scratch/xvfb-run.vY6PGP’
‘~/tmp/scratch/xvfb-run.vmal06’ ‘~/tmp/scratch/xvfb-run.wphiYf’
‘~/tmp/scratch/xvfb-run.xbhFAo’ ‘~/tmp/scratch/xvfb-run.z17byk’
‘~/tmp/scratch/xvfb-run.zWopTE’ ‘~/tmp/scratch/xvfb-run.zxlmPt’
‘/dev/shm/0d10ac10-0fcf-4671-bd2e-374051628659’
‘/dev/shm/0d10ac10-0fcf-4671-bd2e-374051628659_counter’
‘/dev/shm/1b17a7cb-54b7-4dd4-b131-ef81121ce06e’
‘/dev/shm/1b17a7cb-54b7-4dd4-b131-ef81121ce06e_counter’
‘/dev/shm/2a58f230-a656-45bb-9964-3dd672cfbf0b’
‘/dev/shm/2a58f230-a656-45bb-9964-3dd672cfbf0b_counter’
‘/dev/shm/3d6a52c7-b598-48b6-a011-59ca313ce291’
‘/dev/shm/3d6a52c7-b598-48b6-a011-59ca313ce291_counter’
‘/dev/shm/4128e3bb-f9c1-4489-9847-69c921b4bdee’
‘/dev/shm/4128e3bb-f9c1-4489-9847-69c921b4bdee_counter’
‘/dev/shm/4f1b627a-aaca-4312-8682-97a3ba71b4dd’
‘/dev/shm/4f1b627a-aaca-4312-8682-97a3ba71b4dd_counter’
‘/dev/shm/77198dc1-f792-402e-a587-d0d3d2e941d1’
‘/dev/shm/77198dc1-f792-402e-a587-d0d3d2e941d1_counter’
‘/dev/shm/8572bfd7-524e-48d7-aad5-51638e9ba8eb’
‘/dev/shm/8572bfd7-524e-48d7-aad5-51638e9ba8eb_counter’
‘/dev/shm/8587029b-7b1d-41a6-87a2-93032985b18f’
‘/dev/shm/8587029b-7b1d-41a6-87a2-93032985b18f_counter’
‘/dev/shm/8e320a81-7a76-4e43-ad61-41d9bc209fd1’
‘/dev/shm/8e320a81-7a76-4e43-ad61-41d9bc209fd1_counter’
‘/dev/shm/9b4dde39-9d71-44ed-a517-f2539c4f3c55’
‘/dev/shm/9b4dde39-9d71-44ed-a517-f2539c4f3c55_counter’
‘/dev/shm/ac7fe6f2-992f-4568-bd1f-7cf2cff58dcd’
‘/dev/shm/ac7fe6f2-992f-4568-bd1f-7cf2cff58dcd_counter’
‘/dev/shm/b8456cd4-efc0-4343-8ef5-563b95fc72d5’
‘/dev/shm/b8456cd4-efc0-4343-8ef5-563b95fc72d5_counter’
‘/dev/shm/bcc2ac55-2b0a-4b08-8cbc-ef88c7dcb083’
‘/dev/shm/bcc2ac55-2b0a-4b08-8cbc-ef88c7dcb083_counter’
‘/dev/shm/d26d3e27-15ac-4182-a60a-24a25aa6dd34’
‘/dev/shm/d26d3e27-15ac-4182-a60a-24a25aa6dd34_counter’
‘/dev/shm/ef6f3d6c-6c97-47d8-8f97-af72ab3e0ed8’
‘/dev/shm/ef6f3d6c-6c97-47d8-8f97-af72ab3e0ed8_counter’
‘/dev/shm/sem.0d10ac10-0fcf-4671-bd2e-374051628659_bigmemory_counter_mutex’
‘/dev/shm/sem.1b17a7cb-54b7-4dd4-b131-ef81121ce06e_bigmemory_counter_mutex’
‘/dev/shm/sem.2a58f230-a656-45bb-9964-3dd672cfbf0b_bigmemory_counter_mutex’
‘/dev/shm/sem.3d6a52c7-b598-48b6-a011-59ca313ce291_bigmemory_counter_mutex’
‘/dev/shm/sem.4128e3bb-f9c1-4489-9847-69c921b4bdee_bigmemory_counter_mutex’
‘/dev/shm/sem.4e149c04-9902-4ac2-81a1-2cd98e77dbef_bigmemory_counter_mutex’
‘/dev/shm/sem.4f1b627a-aaca-4312-8682-97a3ba71b4dd_bigmemory_counter_mutex’
‘/dev/shm/sem.77198dc1-f792-402e-a587-d0d3d2e941d1_bigmemory_counter_mutex’
‘/dev/shm/sem.8572bfd7-524e-48d7-aad5-51638e9ba8eb_bigmemory_counter_mutex’
‘/dev/shm/sem.8587029b-7b1d-41a6-87a2-93032985b18f_bigmemory_counter_mutex’
‘/dev/shm/sem.8e320a81-7a76-4e43-ad61-41d9bc209fd1_bigmemory_counter_mutex’
‘/dev/shm/sem.91156269-33a1-4367-8a67-f2cf1cb5abf6_bigmemory_counter_mutex’
‘/dev/shm/sem.9b4dde39-9d71-44ed-a517-f2539c4f3c55_bigmemory_counter_mutex’
‘/dev/shm/sem.ac7fe6f2-992f-4568-bd1f-7cf2cff58dcd_bigmemory_counter_mutex’
‘/dev/shm/sem.b6c187f4-6e50-40fc-ad43-9b6783d5fe00_bigmemory_counter_mutex’
‘/dev/shm/sem.b8456cd4-efc0-4343-8ef5-563b95fc72d5_bigmemory_counter_mutex’
‘/dev/shm/sem.bcc2ac55-2b0a-4b08-8cbc-ef88c7dcb083_bigmemory_counter_mutex’
‘/dev/shm/sem.bd13d726-f7c1-424a-bc37-65c03974f9a4_bigmemory_counter_mutex’
‘/dev/shm/sem.d26d3e27-15ac-4182-a60a-24a25aa6dd34_bigmemory_counter_mutex’
‘/dev/shm/sem.ef6f3d6c-6c97-47d8-8f97-af72ab3e0ed8_bigmemory_counter_mutex’
‘/dev/shm/sem.f48cea97-192b-41a2-a5fb-d48dca4e7b69_bigmemory_counter_mutex’
‘/dev/shm/sem.fe06888a-bc80-4aef-89e3-c98c20565edb_bigmemory_counter_mutex’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.4.0
Check: Rd files
Result: WARN
2026-06-03 09:26:43.684 R[6872:153327] XType: Using static font registry.
Flavor: r-oldrel-macos-arm64