Last updated on 2025-11-16 00:48:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 11.03 | 125.97 | 137.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 7.50 | 92.06 | 99.56 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 63.00 | 155.34 | 218.34 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 97.00 | 120.22 | 217.22 | OK | |
| r-devel-windows-x86_64 | 0.3.0 | 13.00 | 121.00 | 134.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 11.14 | 116.11 | 127.25 | OK | |
| r-release-linux-x86_64 | 0.3.0 | 8.47 | 100.73 | 109.20 | ERROR | |
| r-release-macos-arm64 | 0.3.0 | 4.00 | 44.00 | 48.00 | OK | |
| r-release-macos-x86_64 | 0.3.0 | 7.00 | 90.00 | 97.00 | OK | |
| r-release-windows-x86_64 | 0.3.0 | 14.00 | 118.00 | 132.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | 5.00 | 46.00 | 51.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.0 | 7.00 | 76.00 | 83.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.0 | 16.00 | 149.00 | 165.00 | OK |
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cellpypes)
>
> test_check("cellpypes")
Saving _problems/test-pseudobulk-21.R
Saving _problems/test-pseudobulk-65.R
[ FAIL 2 | WARN 4 | SKIP 0 | PASS 53 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-pseudobulk.R:10:3'): class_to_deseq2 example working ─────────
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
Install DESeq2 to use class_to_deseq2 function.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-pseudobulk.R:10:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─cellpypes::class_to_deseq2(obj, meta_data, "T", ~treatment) at test-pseudobulk.R:20:7
── Error ('test-pseudobulk.R:61:3'): class_to_deseq2 stops gracefully if class has zero cells. ──
Error in `class_to_deseq2(dds, meta_data, "T", ~treatment)`: Install DESeq2 to use class_to_deseq2 function.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-pseudobulk.R:61:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─cellpypes::class_to_deseq2(dds, meta_data, "T", ~treatment)
[ FAIL 2 | WARN 4 | SKIP 0 | PASS 53 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64