Last updated on 2025-09-12 22:51:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | 19.79 | 203.39 | 223.18 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 14.74 | 144.89 | 159.63 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 337.73 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 329.72 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.1 | 21.00 | 218.00 | 239.00 | OK | |
| r-patched-linux-x86_64 | 2.0.1 | 19.33 | 240.57 | 259.90 | OK | |
| r-release-linux-x86_64 | 2.0.1 | 18.33 | 243.05 | 261.38 | OK | |
| r-release-macos-arm64 | 2.0.1 | 113.00 | OK | |||
| r-release-macos-x86_64 | 2.0.1 | 239.00 | OK | |||
| r-release-windows-x86_64 | 2.0.1 | 21.00 | 224.00 | 245.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | 112.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.1 | 258.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.1 | 28.00 | 301.00 | 329.00 | OK |
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘easysurv-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_km
> ### Title: Generate Kaplan-Meier estimates
> ### Aliases: get_km
>
> ### ** Examples
>
> km_results <- get_km(
+ data = easysurv::easy_bc,
+ time = "recyrs",
+ event = "censrec",
+ group = "group",
+ risktable_symbols = FALSE
+ )
>
> km_results
── Kaplan-Meier Data ───────────────────────────────────────────────────────────
The get_km function has produced the following outputs:
• km: A `survival::survfit()` object for Kaplan-Meier estimates.
• km_for_excel: A list of stepped Kaplan-Meier data for external plotting.
• km_per_group: A list of Kaplan-Meier estimates for each group.
• km_plot: A Kaplan-Meier plot.
• km_summary: A summary table of the Kaplan-Meier estimates.
── km Summary ──
group records events rmean se(rmean) median 0.95LCL 0.95UCL
Good Good 229 51 5.934330 0.1616003 NA NA NA
Medium Medium 229 103 4.600852 0.1856699 5.254795 4.115068 5.572603
Poor Poor 228 145 3.101736 0.1772520 2.183562 1.978082 2.619178
Median follow-up
Good 4.452055
Medium 4.712329
Poor 4.115068
Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = "{n.risk}", :
argument "risktable_height" is missing, with no default
Calls: <Anonymous> ... ggsurvfit_build -> <Anonymous> -> .construct_risktable
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘easysurv.Rmd’ using rmarkdown
Quitting from easysurv.Rmd:148-157 [km]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.construct_risktable()`:
! argument "risktable_height" is missing, with no default
---
Backtrace:
▆
1. └─tools::buildVignettes(...)
2. ├─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─engine$weave(file, quiet = quiet, encoding = enc)
7. └─knitr:::vweave_rmarkdown(...)
8. └─rmarkdown::render(...)
9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10. └─knitr:::process_file(text, output)
11. ├─xfun:::handle_error(...)
12. ├─base::withCallingHandlers(...)
13. └─knitr:::process_group(group)
14. └─knitr:::call_block(x)
15. └─knitr:::block_exec(params)
16. └─knitr:::eng_r(options)
17. ├─knitr:::in_input_dir(...)
18. │ └─knitr:::in_dir(input_dir(), expr)
19. └─knitr (local) evaluate(...)
20. └─evaluate::evaluate(...)
21. ├─base::withRestarts(...)
22. │ └─base (local) withRestartList(expr, restarts)
23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
24. │ │ └─base (local) doWithOneRestart(return(expr), restart)
25. │ └─base (local) withRestartList(expr, restarts[-nr])
26. │ └─base (local) withOneRestart(expr, restarts[[1L]])
27. │ └─base (local) doWithOneRestart(return(expr), restart)
28. ├─evaluate:::with_handlers(...)
29. │ ├─base::eval(call)
30. │ │ └─base::eval(call)
31. │ └─base::withCallingHandlers(...)
32. └─watcher$print_value(ev$value, ev$visible, envir)
33. ├─base::withVisible(handle_value(handler, value, visible, envir))
34. └─evaluate:::handle_value(handler, value, visible, envir)
35. └─handler$value(value, visible)
36. └─knitr (local) fun(x, options = options)
37. ├─base::withVisible(knit_print(x, ...))
38. ├─knitr::knit_print(x, ...)
39. └─knitr:::knit_print.default(x, ...)
40. └─knitr::normal_print(x)
41. ├─base::print(x)
42. └─easysurv:::print.get_km(x)
43. ├─base::print(x$km_plot)
44. └─ggsurvfit:::print.ggsurvfit(x$km_plot)
45. └─ggsurvfit::ggsurvfit_build(x, combine_plots = TRUE)
46. ├─rlang::inject(...)
47. └─ggsurvfit:::.construct_risktable(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'easysurv.Rmd' failed with diagnostics:
argument "risktable_height" is missing, with no default
--- failed re-building ‘easysurv.Rmd’
SUMMARY: processing the following file failed:
‘easysurv.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘easysurv-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_km
> ### Title: Generate Kaplan-Meier estimates
> ### Aliases: get_km
>
> ### ** Examples
>
> km_results <- get_km(
+ data = easysurv::easy_bc,
+ time = "recyrs",
+ event = "censrec",
+ group = "group",
+ risktable_symbols = FALSE
+ )
>
> km_results
── Kaplan-Meier Data ───────────────────────────────────────────────────────────
The get_km function has produced the following outputs:
• km: A `survival::survfit()` object for Kaplan-Meier estimates.
• km_for_excel: A list of stepped Kaplan-Meier data for external plotting.
• km_per_group: A list of Kaplan-Meier estimates for each group.
• km_plot: A Kaplan-Meier plot.
• km_summary: A summary table of the Kaplan-Meier estimates.
── km Summary ──
group records events rmean se(rmean) median 0.95LCL 0.95UCL
Good Good 229 51 5.934330 0.1616003 NA NA NA
Medium Medium 229 103 4.600852 0.1856699 5.254795 4.115068 5.572603
Poor Poor 228 145 3.101736 0.1772520 2.183562 1.978082 2.619178
Median follow-up
Good 4.452055
Medium 4.712329
Poor 4.115068
Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = "{n.risk}", :
argument "risktable_height" is missing, with no default
Calls: <Anonymous> ... ggsurvfit_build -> <Anonymous> -> .construct_risktable
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘easysurv.Rmd’ using rmarkdown
Quitting from easysurv.Rmd:148-157 [km]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.construct_risktable()`:
! argument "risktable_height" is missing, with no default
---
Backtrace:
▆
1. └─tools::buildVignettes(...)
2. ├─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─engine$weave(file, quiet = quiet, encoding = enc)
7. └─knitr:::vweave_rmarkdown(...)
8. └─rmarkdown::render(...)
9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10. └─knitr:::process_file(text, output)
11. ├─xfun:::handle_error(...)
12. ├─base::withCallingHandlers(...)
13. └─knitr:::process_group(group)
14. └─knitr:::call_block(x)
15. └─knitr:::block_exec(params)
16. └─knitr:::eng_r(options)
17. ├─knitr:::in_input_dir(...)
18. │ └─knitr:::in_dir(input_dir(), expr)
19. └─knitr (local) evaluate(...)
20. └─evaluate::evaluate(...)
21. ├─base::withRestarts(...)
22. │ └─base (local) withRestartList(expr, restarts)
23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
24. │ │ └─base (local) doWithOneRestart(return(expr), restart)
25. │ └─base (local) withRestartList(expr, restarts[-nr])
26. │ └─base (local) withOneRestart(expr, restarts[[1L]])
27. │ └─base (local) doWithOneRestart(return(expr), restart)
28. ├─evaluate:::with_handlers(...)
29. │ ├─base::eval(call)
30. │ │ └─base::eval(call)
31. │ └─base::withCallingHandlers(...)
32. └─watcher$print_value(ev$value, ev$visible, envir)
33. ├─base::withVisible(handle_value(handler, value, visible, envir))
34. └─evaluate:::handle_value(handler, value, visible, envir)
35. └─handler$value(value, visible)
36. └─knitr (local) fun(x, options = options)
37. ├─base::withVisible(knit_print(x, ...))
38. ├─knitr::knit_print(x, ...)
39. └─knitr:::knit_print.default(x, ...)
40. └─knitr::normal_print(x)
41. ├─base::print(x)
42. └─easysurv:::print.get_km(x)
43. ├─base::print(x$km_plot)
44. └─ggsurvfit:::print.ggsurvfit(x$km_plot)
45. └─ggsurvfit::ggsurvfit_build(x, combine_plots = TRUE)
46. ├─rlang::inject(...)
47. └─ggsurvfit:::.construct_risktable(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'easysurv.Rmd' failed with diagnostics:
argument "risktable_height" is missing, with no default
--- failed re-building ‘easysurv.Rmd’
SUMMARY: processing the following file failed:
‘easysurv.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc